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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067797 ID=TCONS_00067797|Name=TCONS_00067797|organism=Clytia hemisphaerica|type=transcript|length=1111bp
GAAGAGTATTTCATTCATAAAAtacaaagaagaaaatattgaaCATAAAA
AGAAAGAGAGTGAGAGAGAGATCAAAAATAGAAGAAcgagtttattttta
tttattgtcGGTGTGCGTTTGAGTTGaagatttaaaacaaaagacttttt
gaaacaatgtcGACCATACTATGCGATTGGAATTCTTTTGCAATCTTTAT
GCATTGATCATTATAATCACACTCGAAGCTATAGAACTACCATTCTGCGA
TTCCAATCCACTGACGTACTTCAACAACCAAACTGGTAAAGGACCAAATA
TCCAACCAGCTCAGAACCTCACCAGTCATATCAATATCTTTACGAACTTC
AAGACTAATAACCAAACAAATATGAAAAAACACAGGTGTTGTAGACTAGG
AGCCGATCTCAAAAACTCTACAAATTGTAGCTTATCGATTATTATTATGA
ACCAGAAAAAGTGGCTAGCGCAAGGAAGACCTTTTACAATGAACCAAATG
CATATGAAAAAGACACCAAGGAACATCACGAGCCCCACCAACAGAGGGGG
CATTCTTGCATTGAAAATAATGCAACAATGTAATAGAAATCGTGTATTTG
ATCGAATCTTTATTCAATGTTGTATGCGAGATCCAGGCTAGATTCTAAGC
TATTTTAAACAGTGGTACACTGACTGATGGCGTGTTTGGCTACACTGAGC
TGGATTACCAAGTTCCATGGCTAACAATGACGTGAGGTAGTTTTTATGTG
AGTTACATTTATCAGAAACAAAACTTTGTTCACTGGTGACTAAACTTGta
gattggttgattgattgattgattgatgcaTATATGAAAGAGGTTGACGC
TAATTATTGAACCTGATAAAATACAACTAACGTAAAAGAATATCGTTTGT
AATGATAAGATGAACAGCGAAAATGGAAACgtgtgaaaattatttttagt
gtTGCCTGAAAAGAGTAAAATGATATTTTCTGTTAATTTGGACTGAgaga
aaaaaaatggaaaaaatttggaaaatcgaATGAGagattccattttatat
ccataaaGGGgtgtggacgaacatttccagggggtataaaGCAGGTTTTT
ctgaatttcca Run BLAST on NCBI protein sequence of TCONS_00067797-protein >TCONS_00067797-protein ID=TCONS_00067797-protein|Name=TCONS_00067797-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MRLEFFCNLYALIIIITLEAIELPFCDSNPLTYFNNQTGKGPNIQPAQNL
TSHINIFTNFKTNNQTNMKKHRCCRLGADLKNSTNCSLSIIIMNQKKWLA
QGRPFTMNQMHMKKTPRNITSPTNRGGILALKIMQQCNRNRVFDRIFIQC
CMRDPG Run BLAST on NCBI transcript from alignment at scaffold_476:47187..49475+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067797 ID=TCONS_00067797|Name=TCONS_00067797|organism=Clytia hemisphaerica|type=transcript|length=2289bp|location=Sequence derived from alignment at scaffold_476:47187..49475+ (Clytia hemisphaerica)
GAAGAGTATTTCATTCATAAAAtacaaagaagaaaatattgaaCATAAAA
AGAAAGAGAGTGAGAGAGAGATCAAAAATAGAAGAAcgagtttattttta
tttattgtcGGTGTGCGTTTGAGTTGaagatttaaaacaaaagacttttt
gaaacaatgtcGACCATACTATGCGATTGGAATTCTTTTGCAATCTTTAT
GCATTGATCATTATAATCACACTCGAAGGTATTCTTCTATTCTTCTATTC
TTCTATTGTTTTTCTATTCTTTGAATAAGCACGTGGGGGGGGGGGAGACA
AAATTTATGAAGTGGGAAATAATATTTTGGCACTGTAATTCGATAATGAA
ATATTGCCCAGCTTGCTTGTGCGTTGGTTAGGATATTGGTAAATTGCAAT
ACAGCGGAGTCTCCATGACGGGGTACACAAAATTTATTCTATAGTTAAGG
AAATTTATGGAGTAAGATTCATGAGACATTGGAAAAAACATGCTCGAGTT
TTAAGGGAAACATTCCAGATATGGTACAGAAGTTCAAATTATGGAGACCC
CACTGTAGTATATATAAAGGTTGTGCTTGAGTCGTTGAGGACCTGTTTCA
TTTGTCTCCTgtctttacaaaaatgaacaACTAAAACACGTGAGCAACAA
AGAACAAAGTTTCGGCGCTCAAAATATTTGCTTTGTTTGAGCTGatccac
tcttttttataagaaaaccagtacacgatttttttttataagaacgtcaa
aaatttttgaagccttcggatgttcttagttttttggatttgaagcctaa
aaatgttcttaaaatgttcttattttNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNagtctccaaagccttagaatgttc
ttagaatgttcttaaatttttgggcctcgaagccttatgttcttatatag
tttgttcttataaaaaaaaaacgtgtaaatatcTGATGAGGCTCGTTGGC
ACTTTGagtctcaaattgttcttatcctgttgttattttttgggcaaaat
tgaaatatcttagGATTTATATCCGAATTCTAGATTCTTTTGATTATTTA
TTTGCTTTAAATTCAGCCAAATTCAGCCAATTCCAGCTTTGTCCTTAATT
CATtacatttttgagcctcattgatTTTAAAGGATCAACTCAAAAAATCC
AGGAGGTATCTAAAGGGGTATTGGCACTAATTCCTTTTCTCAATCTTGCA
TTTCAGCTATAGAACTACCATTCTGCGATTCCAATCCACTGACGTACTTC
AACAACCAAACTGGTAAAGGACCAAATATCCAACCAGCTCAGAACCTCAC
CAGTCATATCAATATCTTTACGAACTTCAAGACTAATAACCAAACAAATA
TGAAAAAACACAGGTGTTGTAGACTAGGAGCCGATCTCAAAAACTCTACA
AATTGTAGCTTATCGATTATTATTATGAACCAGAAAAAGTGGCTAGCGCA
AGGAAGACCTTTTACAATGAACCAAATGCATATGAAAAAGACACCAAGGA
ACATCACGAGCCCCACCAACAGAGGGGGCATTCTTGCATTGAAAATAATG
CAACAATGTAATAGAAATCGTGTATTTGATCGAATCTTTATTCAATGTTG
TATGCGAGATCCAGGCTAGATTCTAAGCTATTTTAAACAGTGGTACACTG
ACTGATGGCGTGTTTGGCTACACTGAGCTGGATTACCAAGTTCCATGGCT
AACAATGACGTGAGGTAGTTTTTATGTGAGTTACATTTATCAGAAACAAA
ACTTTGTTCACTGGTGACTAAACTTGtagattggttgattgattgattga
ttgatgcaTATATGAAAGAGGTTGACGCTAATTATTGAACCTGATAAAAT
ACAACTAACGTAAAAGAATATCGTTTGTAATGATAAGATGAACAGCGAAA
ATGGAAACgtgtgaaaattatttttagtgtTGCCTGAAAAGAGTAAAATG
ATATTTTCTGTTAATTTGGACTGAgagaaaaaaaatggaaaaaatttgga
aaatcgaATGAGagattccattttatatccataaaGGGgtgtggacgaac
atttccagggggtataaaGCAGGTTTTTctgaatttcca Coding sequence (CDS) from alignment at scaffold_476:47187..49475+ >TCONS_00067797 ID=TCONS_00067797|Name=TCONS_00067797|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_476:47187..49475+ (Clytia hemisphaerica)
ATGCGATTGGAATTCTTTTGCAATCTTTATGCATTGATCATTATAATCAC
ACTCGAAGCTATAGAACTACCATTCTGCGATTCCAATCCACTGACGTACT
TCAACAACCAAACTGGTAAAGGACCAAATATCCAACCAGCTCAGAACCTC
ACCAGTCATATCAATATCTTTACGAACTTCAAGACTAATAACCAAACAAA
TATGAAAAAACACAGGTGTTGTAGACTAGGAGCCGATCTCAAAAACTCTA
CAAATTGTAGCTTATCGATTATTATTATGAACCAGAAAAAGTGGCTAGCG
CAAGGAAGACCTTTTACAATGAACCAAATGCATATGAAAAAGACACCAAG
GAACATCACGAGCCCCACCAACAGAGGGGGCATTCTTGCATTGAAAATAA
TGCAACAATGTAATAGAAATCGTGTATTTGATCGAATCTTTATTCAATGT
TGTATGCGAGATCCAGGCTAGATGCGATTGGAATTCTTTTGCAATCTTTA
TGCATTGATCATTATAATCACACTCGAAGCTATAGAACTACCATTCTGCG
ATTCCAATCCACTGACGTACTTCAACAACCAAACTGGTAAAGGACCAAAT
ATCCAACCAGCTCAGAACCTCACCAGTCATATCAATATCTTTACGAACTT
CAAGACTAATAACCAAACAAATATGAAAAAACACAGGTGTTGTAGACTAG
GAGCCGATCTCAAAAACTCTACAAATTGTAGCTTATCGATTATTATTATG
AACCAGAAAAAGTGGCTAGCGCAAGGAAGACCTTTTACAATGAACCAAAT
GCATATGAAAAAGACACCAAGGAACATCACGAGCCCCACCAACAGAGGGG
GCATTCTTGCATTGAAAATAATGCAACAATGTAATAGAAATCGTGTATTT
GATCGAATCTTTATTCAATGTTGTATGCGAGATCCAGGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067797-exon-scaffold_476-1491911889:47187..47414 | TCONS_00067797-exon-scaffold_476-1491911889:47187..47414 | Clytia hemisphaerica | exon |
| TCONS_00067797-exon-scaffold_476-1510915933:47187..47414 | TCONS_00067797-exon-scaffold_476-1510915933:47187..47414 | Clytia hemisphaerica | exon |
| TCONS_00067797-exon-scaffold_476-1575043694:47187..47414 | TCONS_00067797-exon-scaffold_476-1575043694:47187..47414 | Clytia hemisphaerica | exon |
| TCONS_00067797-exon-scaffold_476-1491911889:48593..49475 | TCONS_00067797-exon-scaffold_476-1491911889:48593..49475 | Clytia hemisphaerica | exon |
| TCONS_00067797-exon-scaffold_476-1510915933:48593..49475 | TCONS_00067797-exon-scaffold_476-1510915933:48593..49475 | Clytia hemisphaerica | exon |
| TCONS_00067797-exon-scaffold_476-1575043694:48593..49475 | TCONS_00067797-exon-scaffold_476-1575043694:48593..49475 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:47187..49475 + |
Blast
The following BLAST results are available for this feature:
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