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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067793 ID=TCONS_00067793|Name=TCONS_00067793|organism=Clytia hemisphaerica|type=transcript|length=567bp
ATAAAAAGTCTACCACTGGTAGCCAGACAGCAGCTCAGCAAATATCTTAC
CAACGAAGCTTTTCCAAGGACAAGACAACTGACAaccaaaatgatgaaat
taattttcttgaCGATTGCCTTCATCGCAACAGTTTCAgCAACATGTTCT
GATGCATCAAGGAATTGTCGATTCTTCCCAACTTCCATGTGCTCAAATGC
AATCATGAAAATGAGATGCAAAGCCAAATGTGGTCTGTGTGGTACAGGAG
CTTGTTCAGATGCTTCGAAATTCTGTCCAATGTTCCAAGGGAAATGTGAC
AATCCTTTGGTCAAATCCAAATGTCAAAACATGTGCAATGCTTGTGATGG
TGGATCAACTGATAATGGAGGTGCATGCGCAGACGAAGATCCAATTTGTT
CAGAATTGATGAACGAATGTTCAAATGATGACATTCAAAAGACGTGTAAG
AAGACTTGTGGAGTCTGCTAACTCAACAATATATGAAATATATATAttca
aaattacattttaataaaaaagatttacagATAATACAATGGTGTAATAT
GGTTtcctttaaaggga Run BLAST on NCBI protein sequence of TCONS_00067793-protein >TCONS_00067793-protein ID=TCONS_00067793-protein|Name=TCONS_00067793-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
IKSLPLVARQQLSKYLTNEAFPRTRQLTTKMMKLIFLTIAFIATVSATCS
DASRNCRFFPTSMCSNAIMKMRCKAKCGLCGTGACSDASKFCPMFQGKCD
NPLVKSKCQNMCNACDGGSTDNGGACADEDPICSELMNECSNDDIQKTCK
KTCGVC Run BLAST on NCBI transcript from alignment at scaffold_476:7303..14354+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067793 ID=TCONS_00067793|Name=TCONS_00067793|organism=Clytia hemisphaerica|type=transcript|length=7052bp|location=Sequence derived from alignment at scaffold_476:7303..14354+ (Clytia hemisphaerica)
ATAAAAAGTCTACCACTGGTAGCCAGACAGCAGCTCAGCAAATATCTTAC
CAACGAAGCTTTTCCAAGGACAAGACAACTGACAaccaaaatgatgaaat
taattttcttgaCGATTGCCTTCATCGCAACAGTTTCAggtatgtctttt
tttactttaagCCTGAAGAGGCTAGAGAGTAATTTTCTTAGGGGATGGGA
AATAAAGCAAGTcttctacacgctttttttttataagaatatcttctata
agaatatcagggtgaaaattggccaaatcctaaaaataccctctagggtg
agtttcacagaatttgatcattgtatttggttaacagaaaaagctgcttc
ctttgttagagataaattgaagctttgaggaagaaatgtaatttaaccca
aatgttcactcaaaagttcaaaactctcaaattgatcaatTCTcatgtac
cttaaaggaagaaattttggcggaaagaaaatttggcggatttggcggat
ttaactgaaatccgctaaattaaattcccgccaaaatttcttcctttaag
gtatgcaaaaaagtcaagtctaaaaaagtaagaatacgttaagaatattt
caccctcaattttggcacatTCTTAAGAATAAAggacactattcttataa
aaaagcgtgcattTTCCATCCAAAACGAGTGACGAAATTGGTTTTCAACA
AGCGCTATGTATTAAGTAAGATAAAACGAGAAATGCAccacgtaaaaaaa
aacaaaaaaaaaaaaacgctaGATTCAATAATCCAAATGCGACAGAGATC
TTAAGGCTTTCCTTTTTTCTTGCGTTGAAAAGGTTACAGATTCCTATCTA
GCNAAAAAAACGATAGATTCAATAATCCAAATGCGACAGAGATCTTAAGG
CTTTCCTTTTTTCTTGCGTTGAAAAGGTTACAGATTCCTATCTAGCCTTA
CAGGCTTTAAGCTCAATGGAACAAAGTATatacttattttttataaaaac
atgtcAATATTTTCTCAACCTCTAGGTAGTTGTATAAAAGGCCATAAAAG
CTTTGCAGACTTTTTAGATTCTCAATCAGGTTGTGGATTGAATTTTTCTT
GAAATGCTTGCACTTTTTAATTAAAGGCATAGCAAAGCTGTATACAATAA
AGTAATTCCTAAAGTCTAAAGCTTCTAACTCAAGTTttcaatttgttctt
aggtttttgtgaaattttctatCCCTTCTTCTATAATGTCTTTTATAAGC
TACTTTTATATCCTAAGAACTCTTCAATGACAAATTTAACTTCAAGTTTT
CAATTCATTCTtaggttttaatgaaatttcatcTTTTGCTCCATAACGTC
Taaactctcgggtacctaataagcgtctcccgcccccgctaattaatttt
tcgaaaattttccacccaggacattctaaTTCTAACCCCTctgcttattg
attttttgggaaaatgattttgaaagttccctcttttgtcctaattctga
tgtattagctctagtttagacggccgactttctgccccgcctattctaat
tgttagagtaggcagaaagagggcacaaagttggttgttaaaatctttgc
ttggaaaggtttgaaagaAGACTTTGATCGGANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTAGAGGGCTATGCA
tcgactttagacagcccactttatgccctctttaattcacaattagaata
ggcagggcaaaaagtgggccgtctaaactagagcttagcctccttttcaa
aaagtttccacccaggacatttttattccaaccccctcaTTAACATTTGA
GTAATTTTCCACCTGCTTATTCCAAAGCCCCCGGTTATcaggcacccgag
agtaagtCCATTcttaataatttcaattttttaattactAAGTTTAAAAA
GGTTCGGATTCCTATTTTTAATGTCACAAGTATAAAACTCatctttttta
ataaattcatttttctaGCAACATGTTCTGATGCATCAAGGAATTGTCGA
TTCTTCCCAACTTCCATGTGCTCAAATGCAATCATGAAAATGAGATGCAA
AGCCAAATGTGGTCTGTGTGGTACAGGAGGTAATAATGAaacaattttgt
tgttttgcacctccctaaaatcaaattacatTTTCATAAAAACCACTATC
ATTTGGCTAAGGCTCAAAATTAACTATTGTTTTGTGATTTTGAGGCTTAA
AAATGGTATTTGAGACAGCTTCTGAAATTTGAGGCTAAGGTTGTCTGAGG
TTGTTCCTTTGGGATGAAATTGAATCTCAtgttcttaaaggttttatttt
taagtaagagtgatatcgtttgcttactcatcaattttaatttacaaact
ttttcacattgaatttacacggatgtggagcaatagacagaaagaggaaa
agaaaaacatttcatttgCTTATAGTCAGCacaatagacagacactgtcc
tgatacgAAACATGTTTCTGATAttaaacgggaacacttatgtaaaaata
aaacctttaaaaaagctATCTTATCTGGGAGGTGATAAAATGTCTCTGGT
TTAGCGCATTCAATTGGCAGAANGGTTTAGTGTTGATTTTAAGTGACCCA
AATATAGCGCATTCAATTGGCAGAATATAAAGTTTAAGTAATTGAAAATG
CTACTTGGGGGAAAATTcctctactttaatgggattaagttttgcggatt
tgggtgtcaagtTCCAATGGAGATTAGGAAAATccttatccgcgaaatat
tgTTCCCCAATGATCAAAAATATGATGGGGCAGTAAAAAGCACTAGATAG
TAAAAATATTGTCTCCTCgtagtgccatccgcgaaattaagttcccacga
aatcttaacATTTCACGGATAAgctaaaccgcgaaatttaatccccgcga
aagtttaccCAATTAAAGTTTTTGAGAGTACTTGATTCTCACTTCTCTTC
CTGTCACATTTTGTTCAGCTTTCTCTGTATGGTATGGGTCCAATTTTGGG
ACTCTGATTTTTGTCCGCATTTAAGGTCGTTTTCAAATCGAGTGCCACCT
CAGAAAAAGACTGGTTGAAAGAATGGCTTTTATTCTTTTTGGGTCAAAAA
TtaagctagaatgctaagcagtACAAAGCCATGAACCAGAGTTTCTTAAA
GCCGGTAGTCCGCTGTTGGCAGACGCGGACGCGGGCCTTTATTCGATTAT
CTGTGCAAACTTTGCATTCAAACGACCTAAACTAAAAGGAAAAAGCTGCT
ACGTGTCAACCTGCCAAATGACTCAATATATACAAAATATAGTGTTCAAT
GCATATTTTTCTACTTGAAATAGCTTGTTCAGATGCTTCGAAATTCTGTC
CAATGTTCCAAGGGAAATGTGACAATCCTTTGGTCAAATCCAAATGTCAA
AACATGTGCAATGCTTGTGATGGTGGATCAACTGATAATGGAGGTACTAT
TACaggtttttataagcatagattaAATCTTTATAGGCTTCATCACATTT
TTTATGAGCATTGTAATTACAATCTACAATAatggtcataatatattggc
acttttggctaatttacaatttttcgaaaattgaagttcgagcgagaatg
tcaatttttaggccttcaacttgatttcNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAACTCTACcattcgaacctactttagagcactta
caaatcgattgtggtttcaaaacaccccggtgaatttcccttttgtgcca
agtattttgtccatcATTGTAGGCTTAAATATGGGAAAAATTTAAGCAGC
TGCTAAGcatggaaaaaatcaaaatataacagCTGCTTTCTTTTCCATAC
CGTTAACATATGATAAGCATTATTTCGAGCCTGCCAAAACAAggcatttt
tctcattttcgcTGATTTGACAGATTTTaggaattttcataaaattttgc
ttaggatataagcattcTTAAAAAAGCATTCTTCAGTCTTGTCAATCCCG
AGGGGCCTGAGTATGTCTCGGACTGGATtttcgtatgcttataaaaaagt
gtatatgcttagcaaaaaactttttgagcCTCAAAACTATTATGTAAGAC
TTGTGTCAAGGGGGTAGATCACACACCACACATTATGTTTTATTCTCTAC
AGTACTGtgattttaagctttaaaaatttcaagttaactttttctaaaaa
aatccaagataactaactcgaaaacttgtgaacaaaaaataaattccgag
ttagctaactcgaaaatccttttttgaaaataaaaatcgagttagagtcg
agtgacgtcataatttgcacttttatgacgtcataatttagctgattcga
aaattcctaactcaaaaattgctaactcgaagttttctaactcgaagagT
TCGGGCCTCCTCATAGACCCAGTGGGGTTTTTTCggacagtgggggtaaa
aataacggactgaaactcaatggggattgatgttctcatattttttatgg
ctggggatttaaattccattgttttcaagtcaaataATTTAGTGggaatg
ggaaaaatagcataatatttgacaatgaggattggtttatttggttATTT
TCAGTGTGGACAAAAATCGGAGTATAAATTTCCaccagggacgatatttt
ggccaatttttccagtgggaaggggtcacaatgggtctgtgagaaggggg
tgtcaaaatggataaaaaatcCAACATTAAGAGAGATAAAGCTTCCCGAA
GATctttagaaaaaatgaaaacagaaattgcaaataatgaattttttcgT
TATAGGTGCATGCGCAGACGAAGATCCAATTTGTTCAGAATTGATGAACG
AATGTTCAAATGATGACATTCAAAAGACGTGTAAGAAGACTTGTGGAGTC
TGCTAACTCAACAATATATGAAATATATATAttcaaaattacattttaat
aaaaaagatttacagATAATACAATGGTGTAATATGGTTtcctttaaagg
ga Coding sequence (CDS) from alignment at scaffold_476:7303..14354+ >TCONS_00067793 ID=TCONS_00067793|Name=TCONS_00067793|organism=Clytia hemisphaerica|type=CDS|length=1884bp|location=Sequence derived from alignment at scaffold_476:7303..14354+ (Clytia hemisphaerica)
ATAAAAAGTCTACCACTGGTAGCCAGACAGCAGCTCAGCAAATATCTTAC
CAACGAAGCTTTTCCAAGGACAAGACAACTGACAaccaaaatgatgaaat
taattttcttgaCGATTGCCTTCATCGCAACAGTTTCAgCAACATGTTCT
GATGCATCAAGGAATTGTCGATTCTTCCCAACTTCCATGTGCTCAAATGC
AATCATGAAAATGAGATGCAAAGCCAAATGTGGTCTGTGTGGTACAGGAG
CTTGTTCAGATGCTTCGAAATTCTGTCCAATGTTCCAAGGGAAATGTGAC
AATCCTTTGGTCAAATCCAAATGTCAAAACATGTGCAATGCTTGTGATGG
TGGATCAACTGATAATGGAGGTGCATGCGCAGACGAAGATCCAATTTGTT
CAGAATTGATGAACGAATGTTCAAATGATGACATTCAAAAGACGTGTAAG
AAGACTTGTGGAGTCTGCTAAATAAAAAGTCTACCACTGGTAGCCAGACA
GCAGCTCAGCAAATATCTTACCAACGAAGCTTTTCCAAGGACAAGACAAC
TGACAaccaaaatgatgaaattaattttcttgaCGATTGCCTTCATCGCA
ACAGTTTCAgCAACATGTTCTGATGCATCAAGGAATTGTCGATTCTTCCC
AACTTCCATGTGCTCAAATGCAATCATGAAAATGAGATGCAAAGCCAAAT
GTGGTCTGTGTGGTACAGGAGCTTGTTCAGATGCTTCGAAATTCTGTCCA
ATGTTCCAAGGGAAATGTGACAATCCTTTGGTCAAATCCAAATGTCAAAA
CATGTGCAATGCTTGTGATGGTGGATCAACTGATAATGGAGGTGCATGCG
CAGACGAAGATCCAATTTGTTCAGAATTGATGAACGAATGTTCAAATGAT
GACATTCAAAAGACGTGTAAGAAGACTTGTGGAGTCTGCTAAATAAAAAG
TCTACCACTGGTAGCCAGACAGCAGCTCAGCAAATATCTTACCAACGAAG
CTTTTCCAAGGACAAGACAACTGACAaccaaaatgatgaaattaattttc
ttgaCGATTGCCTTCATCGCAACAGTTTCAgCAACATGTTCTGATGCATC
AAGGAATTGTCGATTCTTCCCAACTTCCATGTGCTCAAATGCAATCATGA
AAATGAGATGCAAAGCCAAATGTGGTCTGTGTGGTACAGGAGCTTGTTCA
GATGCTTCGAAATTCTGTCCAATGTTCCAAGGGAAATGTGACAATCCTTT
GGTCAAATCCAAATGTCAAAACATGTGCAATGCTTGTGATGGTGGATCAA
CTGATAATGGAGGTGCATGCGCAGACGAAGATCCAATTTGTTCAGAATTG
ATGAACGAATGTTCAAATGATGACATTCAAAAGACGTGTAAGAAGACTTG
TGGAGTCTGCTAAATAAAAAGTCTACCACTGGTAGCCAGACAGCAGCTCA
GCAAATATCTTACCAACGAAGCTTTTCCAAGGACAAGACAACTGACAacc
aaaatgatgaaattaattttcttgaCGATTGCCTTCATCGCAACAGTTTC
AgCAACATGTTCTGATGCATCAAGGAATTGTCGATTCTTCCCAACTTCCA
TGTGCTCAAATGCAATCATGAAAATGAGATGCAAAGCCAAATGTGGTCTG
TGTGGTACAGGAGCTTGTTCAGATGCTTCGAAATTCTGTCCAATGTTCCA
AGGGAAATGTGACAATCCTTTGGTCAAATCCAAATGTCAAAACATGTGCA
ATGCTTGTGATGGTGGATCAACTGATAATGGAGGTGCATGCGCAGACGAA
GATCCAATTTGTTCAGAATTGATGAACGAATGTTCAAATGATGACATTCA
AAAGACGTGTAAGAAGACTTGTGGAGTCTGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067793-exon-scaffold_476-1491911889:7303..7441 | TCONS_00067793-exon-scaffold_476-1491911889:7303..7441 | Clytia hemisphaerica | exon |
| TCONS_00067793-exon-scaffold_476-1510915933:7303..7441 | TCONS_00067793-exon-scaffold_476-1510915933:7303..7441 | Clytia hemisphaerica | exon |
| TCONS_00067793-exon-scaffold_476-1575043694:7303..7441 | TCONS_00067793-exon-scaffold_476-1575043694:7303..7441 | Clytia hemisphaerica | exon |
| TCONS_00067793-exon-scaffold_476-1491911889:9321..9431 | TCONS_00067793-exon-scaffold_476-1491911889:9321..9431 | Clytia hemisphaerica | exon |
| TCONS_00067793-exon-scaffold_476-1510915933:9321..9431 | TCONS_00067793-exon-scaffold_476-1510915933:9321..9431 | Clytia hemisphaerica | exon |
| TCONS_00067793-exon-scaffold_476-1575043694:9321..9431 | TCONS_00067793-exon-scaffold_476-1575043694:9321..9431 | Clytia hemisphaerica | exon |
| TCONS_00067793-exon-scaffold_476-1491911889:10676..10795 | TCONS_00067793-exon-scaffold_476-1491911889:10676..10795 | Clytia hemisphaerica | exon |
| TCONS_00067793-exon-scaffold_476-1510915933:10676..10795 | TCONS_00067793-exon-scaffold_476-1510915933:10676..10795 | Clytia hemisphaerica | exon |
| TCONS_00067793-exon-scaffold_476-1575043694:10676..10795 | TCONS_00067793-exon-scaffold_476-1575043694:10676..10795 | Clytia hemisphaerica | exon |
| TCONS_00067793-exon-scaffold_476-1491911889:14158..14354 | TCONS_00067793-exon-scaffold_476-1491911889:14158..14354 | Clytia hemisphaerica | exon |
| TCONS_00067793-exon-scaffold_476-1510915933:14158..14354 | TCONS_00067793-exon-scaffold_476-1510915933:14158..14354 | Clytia hemisphaerica | exon |
| TCONS_00067793-exon-scaffold_476-1575043694:14158..14354 | TCONS_00067793-exon-scaffold_476-1575043694:14158..14354 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:7303..14354 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003582 | ShKT_dom |
Blast
The following BLAST results are available for this feature:
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