TCONS_00067767 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067767
Unique NameTCONS_00067767
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067767 ID=TCONS_00067767|Name=TCONS_00067767|organism=Clytia hemisphaerica|type=transcript|length=568bp
CTCAGTCATCATCAAATCAAACTTGATATTGTAAAATGTAACGGTTCTTC
AATCGGTAGTCTCTTGTTTCAAAACTATATCAAAAGTAACTTTCCACAAG
CTTGTTCTCGGCGTTGTGTTGTTTGCTCCAACGATATTCGTAACGAAAAT
AGTCATATTGAATCACCAACCAATGGTCGTAGTTATCCTGTTGACAGTTC
TTTATCATGCTCAAACTGTGGTATCTATTGTATTTCGTGCTTATCACTCT
ATGTTGGTAAAACTACcacaaaatttggtcaaaggtTTAAGGAACATTTC
CAAAAATCACGAACCTCggtagttttggaacactcgaAAACTTGTAGTGT
TGGTAAAGAGAAAACTGATTTCTCAGTTCAGTACCTTGAAAACATGTACT
CTAGAGGAAAGTACTCTTTGTCTGAAAGGGAGTACTTATGGAATGAACGT
TTAAGAGGTGTCTTAAATATCcaaaaaacgttgaaaagttAATTTGAtag
tttgattattttgattttgtccTTATACTTCGtctcattttatcatttta
cttGCACTTTTAATAAcc
Run BLAST on NCBI

protein sequence of TCONS_00067767-protein

>TCONS_00067767-protein ID=TCONS_00067767-protein|Name=TCONS_00067767-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
LSHHQIKLDIVKCNGSSIGSLLFQNYIKSNFPQACSRRCVVCSNDIRNEN
SHIESPTNGRSYPVDSSLSCSNCGIYCISCLSLYVGKTTTKFGQRFKEHF
QKSRTSVVLEHSKTCSVGKEKTDFSVQYLENMYSRGKYSLSEREYLWNER
LRGVLNIQKTLKS
Run BLAST on NCBI

transcript from alignment at scaffold_474:39817..40384

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067767 ID=TCONS_00067767|Name=TCONS_00067767|organism=Clytia hemisphaerica|type=transcript|length=568bp|location=Sequence derived from alignment at scaffold_474:39817..40384 (Clytia hemisphaerica)
ggTTATTAAAAGTGCaagtaaaatgataaaatgagaCGAAGTATAAggac
aaaatcaaaataatcaaactaTCAAATTaacttttcaacgttttttgGAT
ATTTAAGACACCTCTTAAACGTTCATTCCATAAGTACTCCCTTTCAGACA
AAGAGTACTTTCCTCTAGAGTACATGTTTTCAAGGTACTGAACTGAGAAA
TCAGTTTTCTCTTTACCAACACTACAAGTTTtcgagtgttccaaaactac
cGAGGTTCGTGATTTTTGGAAATGTTCCTTAAacctttgaccaaattttg
tgGTAGTTTTACCAACATAGAGTGATAAGCACGAAATACAATAGATACCA
CAGTTTGAGCATGATAAAGAACTGTCAACAGGATAACTACGACCATTGGT
TGGTGATTCAATATGACTATTTTCGTTACGAATATCGTTGGAGCAAACAA
CACAACGCCGAGAACAAGCTTGTGGAAAGTTACTTTTGATATAGTTTTGA
AACAAGAGACTACCGATTGAAGAACCGTTACATTTTACAATATCAAGTTT
GATTTGATGATGACTGAG

Coding sequence (CDS) from alignment at scaffold_474:39817..40384

>TCONS_00067767 ID=TCONS_00067767|Name=TCONS_00067767|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_474:39817..40384 (Clytia hemisphaerica)
TTaacttttcaacgttttttgGATATTTAAGACACCTCTTAAACGTTCAT
TCCATAAGTACTCCCTTTCAGACAAAGAGTACTTTCCTCTAGAGTACATG
TTTTCAAGGTACTGAACTGAGAAATCAGTTTTCTCTTTACCAACACTACA
AGTTTtcgagtgttccaaaactaccGAGGTTCGTGATTTTTGGAAATGTT
CCTTAAacctttgaccaaattttgtgGTAGTTTTACCAACATAGAGTGAT
AAGCACGAAATACAATAGATACCACAGTTTGAGCATGATAAAGAACTGTC
AACAGGATAACTACGACCATTGGTTGGTGATTCAATATGACTATTTTCGT
TACGAATATCGTTGGAGCAAACAACACAACGCCGAGAACAAGCTTGTGGA
AAGTTACTTTTGATATAGTTTTGAAACAAGAGACTACCGATTGAAGAACC
GTTACATTTTACAATATCAAGTTTGATTTGATGATGACTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042325XLOC_042325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067767-exon-scaffold_474-1491911889:39817..40384TCONS_00067767-exon-scaffold_474-1491911889:39817..40384Clytia hemisphaericaexon
TCONS_00067767-exon-scaffold_474-1510915933:39817..40384TCONS_00067767-exon-scaffold_474-1510915933:39817..40384Clytia hemisphaericaexon
TCONS_00067767-exon-scaffold_474-1575043694:39817..40384TCONS_00067767-exon-scaffold_474-1575043694:39817..40384Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067767-proteinTCONS_00067767-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_474supercontigscaffold_474:39817..40384 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09024	2.04348	1.42925	1.16805	3.52523	1.34484	3.63076	2.43678	1.36967	1.2675	1.67248	2.16102	1.45017	2.10785	0.915732	1.05969	0.347229	1.32382	1.53775	0.584949	1.54446	1.34466	0.308173	1.29914	3.94952	3.94731	0.594033	0.654993	0.527918	0.506816
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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