TCONS_00067765 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067765
Unique NameTCONS_00067765
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067765 ID=TCONS_00067765|Name=TCONS_00067765|organism=Clytia hemisphaerica|type=transcript|length=330bp
TGACGAACTATAACCCGTCGAAGACTGCAATCTAACTTTGCGTTTTCAGC
ACCTTGACATCCCATTCTTTGTATAAAAACTTTGGCTTTAACTTTCAAGT
CCTCGAAAAGTAACTTAGAACGAGCAATCCTGAGAAGTTCACcaacaaaa
gaagaataaaaaatcgatTCTGGCAAGTtgctatctttatgtggcattcg
GACTATGGAAAAAGGAAATGCATCCCGTTTATCAAAcaacttataaataa
atatcccGTCTTTGATGGTAATATCCAGGTTTAAATAAGAAGCATGATTA
CCAGAGTGCTCAATTTTGAGTTCAAGCTCA
Run BLAST on NCBI

protein sequence of TCONS_00067765-protein

>TCONS_00067765-protein ID=TCONS_00067765-protein|Name=TCONS_00067765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
ELELKIEHSGNHASYLNLDITIKDGIFIYKLFDKRDAFPFSIVRMPHKDS
NLPESIFYSSFVGELLRIARSKLLFEDLKVKAKVFIQRMGCQGAENAKLD
CSLRRVIVR
Run BLAST on NCBI

transcript from alignment at scaffold_474:16193..16522

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067765 ID=TCONS_00067765|Name=TCONS_00067765|organism=Clytia hemisphaerica|type=transcript|length=330bp|location=Sequence derived from alignment at scaffold_474:16193..16522 (Clytia hemisphaerica)
TGAGCTTGAACTCAAAATTGAGCACTCTGGTAATCATGCTTCTTATTTAA
ACCTGGATATTACCATCAAAGACgggatatttatttataagttgTTTGAT
AAACGGGATGCATTTCCTTTTTCCATAGTCcgaatgccacataaagatag
caACTTGCCAGAatcgattttttattcttcttttgttgGTGAACTTCTCA
GGATTGCTCGTTCTAAGTTACTTTTCGAGGACTTGAAAGTTAAAGCCAAA
GTTTTTATACAAAGAATGGGATGTCAAGGTGCTGAAAACGCAAAGTTAGA
TTGCAGTCTTCGACGGGTTATAGTTCGTCA

Coding sequence (CDS) from alignment at scaffold_474:16193..16522

>TCONS_00067765 ID=TCONS_00067765|Name=TCONS_00067765|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_474:16193..16522 (Clytia hemisphaerica)
GAGCTTGAACTCAAAATTGAGCACTCTGGTAATCATGCTTCTTATTTAAA
CCTGGATATTACCATCAAAGACgggatatttatttataagttgTTTGATA
AACGGGATGCATTTCCTTTTTCCATAGTCcgaatgccacataaagatagc
aACTTGCCAGAatcgattttttattcttcttttgttgGTGAACTTCTCAG
GATTGCTCGTTCTAAGTTACTTTTCGAGGACTTGAAAGTTAAAGCCAAAG
TTTTTATACAAAGAATGGGATGTCAAGGTGCTGAAAACGCAAAGTTAGAT
TGCAGTCTTCGACGGGTTATAGTTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042323XLOC_042323Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067765-proteinTCONS_00067765-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067765-exon-scaffold_474-1491911889:16193..16522TCONS_00067765-exon-scaffold_474-1491911889:16193..16522Clytia hemisphaericaexon
TCONS_00067765-exon-scaffold_474-1510915933:16193..16522TCONS_00067765-exon-scaffold_474-1510915933:16193..16522Clytia hemisphaericaexon
TCONS_00067765-exon-scaffold_474-1575043694:16193..16522TCONS_00067765-exon-scaffold_474-1575043694:16193..16522Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_474supercontigscaffold_474:16193..16522 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.570556	1.06462	1.4017	0	1.86296	0	2.73062	0.432478	1.61735	0	1.61003	1.92404	1.47161	2.9056	0.715597	0.210425	1.84882	0.978047	0.641212	0.43958	0	0.698202	0	0.893515	1.71058	0	2.34032	1.18918	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top