TCONS_00067758 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067758
Unique NameTCONS_00067758
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067758 ID=TCONS_00067758|Name=TCONS_00067758|organism=Clytia hemisphaerica|type=transcript|length=492bp
GTGGAATTTACATGGCATCAACTGAACCTAATTCTTGTGCAGTTTGGGAC
TGCCAGATAATACCTAATGAGAAAGGTGAAGAAGTTATTGGAAAGCATGG
AGATATTGAACACATGAGGGATCTTTTACCAGAGCTAAAAATAATGGAGC
TTGAAATACTTTATTGGATCACTGATCGAACACCTCATGAATCTTTACCT
TTGAAGGAAGAAACTTTTAGAAAGTTTTTTAGACTTGTAACACACAAAGT
TTCAGTTTGGTATGAAGATCATTCAACCAAAAATCCTAATGGAGTTGTCC
CTGATCCTGAGATAACCAGAATAGTAAGAGGATCAAAATTTGATGATGAT
TCTGTCACTATCGTTGGATAAAATGTCACTGTTTTTGATTGAGTTTTATT
TTTGCACTTGATTGATTTATTGGTGACGAATTTTATAGTGACCCTCGCGA
TGTTGAATTGGCGTCAACATTCATAGCTTGAATTCTTCTTAG
Run BLAST on NCBI

protein sequence of TCONS_00067758-protein

>TCONS_00067758-protein ID=TCONS_00067758-protein|Name=TCONS_00067758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
GIYMASTEPNSCAVWDCQIIPNEKGEEVIGKHGDIEHMRDLLPELKIMEL
EILYWITDRTPHESLPLKEETFRKFFRLVTHKVSVWYEDHSTKNPNGVVP
DPEITRIVRGSKFDDDSVTIVG
Run BLAST on NCBI

transcript from alignment at scaffold_473:182523..183014

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067758 ID=TCONS_00067758|Name=TCONS_00067758|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at scaffold_473:182523..183014 (Clytia hemisphaerica)
CTAAGAAGAATTCAAGCTATGAATGTTGACGCCAATTCAACATCGCGAGG
GTCACTATAAAATTCGTCACCAATAAATCAATCAAGTGCAAAAATAAAAC
TCAATCAAAAACAGTGACATTTTATCCAACGATAGTGACAGAATCATCAT
CAAATTTTGATCCTCTTACTATTCTGGTTATCTCAGGATCAGGGACAACT
CCATTAGGATTTTTGGTTGAATGATCTTCATACCAAACTGAAACTTTGTG
TGTTACAAGTCTAAAAAACTTTCTAAAAGTTTCTTCCTTCAAAGGTAAAG
ATTCATGAGGTGTTCGATCAGTGATCCAATAAAGTATTTCAAGCTCCATT
ATTTTTAGCTCTGGTAAAAGATCCCTCATGTGTTCAATATCTCCATGCTT
TCCAATAACTTCTTCACCTTTCTCATTAGGTATTATCTGGCAGTCCCAAA
CTGCACAAGAATTAGGTTCAGTTGATGCCATGTAAATTCCAC

Coding sequence (CDS) from alignment at scaffold_473:182523..183014

>TCONS_00067758 ID=TCONS_00067758|Name=TCONS_00067758|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_473:182523..183014 (Clytia hemisphaerica)
TTATCCAACGATAGTGACAGAATCATCATCAAATTTTGATCCTCTTACTA
TTCTGGTTATCTCAGGATCAGGGACAACTCCATTAGGATTTTTGGTTGAA
TGATCTTCATACCAAACTGAAACTTTGTGTGTTACAAGTCTAAAAAACTT
TCTAAAAGTTTCTTCCTTCAAAGGTAAAGATTCATGAGGTGTTCGATCAG
TGATCCAATAAAGTATTTCAAGCTCCATTATTTTTAGCTCTGGTAAAAGA
TCCCTCATGTGTTCAATATCTCCATGCTTTCCAATAACTTCTTCACCTTT
CTCATTAGGTATTATCTGGCAGTCCCAAACTGCACAAGAATTAGGTTCAG
TTGATGCCATGTAAATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042316XLOC_042316Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067758-proteinTCONS_00067758-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067758-exon-scaffold_473-1491911889:182523..183014TCONS_00067758-exon-scaffold_473-1491911889:182523..183014Clytia hemisphaericaexon
TCONS_00067758-exon-scaffold_473-1510915933:182523..183014TCONS_00067758-exon-scaffold_473-1510915933:182523..183014Clytia hemisphaericaexon
TCONS_00067758-exon-scaffold_473-1575043694:182523..183014TCONS_00067758-exon-scaffold_473-1575043694:182523..183014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_473supercontigscaffold_473:182523..183014 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12816	1.90447	0.763784	1.08088	4.5646	3.35972	3.92457	5.13023	3.43166	1.97675	3.37633	1.77685	5.65146	3.38567	5.52901	6.03574	4.16003	6.50601	4.96258	6.44475	3.66177	2.8923	3.68078	5.52758	2.55734	4.68485	4.75931	1.61706	2.87485	3.4341
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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