|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067739 ID=TCONS_00067739|Name=TCONS_00067739|organism=Clytia hemisphaerica|type=transcript|length=3199bp
CGACTTTTGTGGCAAACCCAGTTAAAAAAAACATGACAAATAGGAGGAGA
TGATTGATGAAACCTTCTCTCTGTCATGTTGCAAAGCAGACACAATTCAT
TTTGGAGAGGTAAGTTGTTTGTTACTGATACGGTACAAGTACAAGGTAGT
CTTATTATAGAGAGAGGGAGGATGCATCATATTCATGTTTGTGGCTCCtg
tattttctggtagaaacaCGTAGAAAATTAAATGGTAGATTTGTTTTCAG
ATTCTAAGCCTTAAGTTTCCATTTAAAGCAAAAGTAAAGTCTATATCCCA
ATTTACCTTCTCTCACCctcatgtttttaaaaaagacctcaaccgtaagt
tggtctaatgtcaacatccctcttctaataacTAATTCCGACACCAAGTT
TTCGGTTTGTGTAAaccacaggtcacaggtcacaggttacaggttacagg
ttacaggtcagtgatgacaggttgactctaatcaatgtcattgcagagga
aaatatgtttggaaaacacaaagaattatcaaaaaaataattctcaagca
atttcatccatataaaaccatttcaaacatcaaaatttaaccatgtgctt
ttatcaaTCTTTCGCAGAGAAATCCAGTGGTGGGTAGACAGGGTGTGCAA
AAGTACATACTAACCAGGGGGTTTAAGCATCTGTGTACGCTTATACATAA
AGGCGGGGAGGGGTTACTCGATTTTTAACCTTTTAGTGCATACCTACtat
gtatttaaaaaaaggtcaaaagtcagaATGTCACTAATCCTCTCCTTAAG
GGAGATTTCAATTTGTTTAAGTCTAATGAGATTTGAACTGTAGAGGTCAT
TACAAGCAAACACTGCAAAAGAAAGAGATCTGCATCACATCAGCATTACA
AGCCCTAAATACTATATCGTTTAGCAGCATGAGAAAAATGGTGTGCAACA
TAATCTAGACCTAGGGTGTAGCAGTGGGAGGCAAACACTGATAATACAGT
AGCATTTATAATTTGTAGCTTCCACCATACCAATAAATTAAAGTCAGGCT
GCTTACTGGCAGAATCTGTTTCGTCTCAGAGAAAATCCCTCCTCGAATTA
GAATGTCTACATGCAATATTATAGGTTTTTCGCAGTTTTTGCCCTTACAA
AGAagtgttgaaaaattgaaaatcattcTGTAAGTTACACAACAACTGCA
AAATGCATAATTAtgattatgcattatgcattttaTTTTACGTATTTTAT
ACCTGCTGTCCACAACAAAATTATCATTCATATTAAAACCTATTCACCAC
CAATTTATTCTCATTAGTGTAAAGTAGCTcaaaagaagagaaaaacaagT
GGTTTATTTACAGAAATAATACTTAACTTTATAATGgcagatttggctga
aaaattgaaCGAATTaaagttagaaaaaaagaatcaaataaacCCTGTGT
TGCACACCATTTTACAAGGTGTTGCTGATGAGAATTGTCAATTTTCTAAA
NAAATAAACCCTGTGTTGCGCACCATTTTACAAGGTGTTGCTGATGAGAA
TTGTCAATTTTCTAAACTTTATGGTATGCCTCATGTTGTCAAATTGATAT
GGGAAAAGGTTTTAATAGCAATGAGCATGCATGTCAAATTTGGAAAGGAT
GAGAACTATAAACAGGATTTCAACCCACCTGAACCATTCGAAGCACAAAC
TGGTTTTCAAGTTCGTTTTGTAGTTGAATTCCCGAAACCAACTGATATCA
ATATCAACATGATGCCTTTTATCATGGCACAAGAATTTGAGGATACCAAA
TTGCCTGACTATCTTGAACCATATTTTGAACTGATAAGCTCTTCATTATT
CAACGAGTATGACTTTCGTAACATGGAGGAAATTGGTAAAGTTGGTTATC
TAACAATTCATGAAAGTTTGGTCAAGGAAAGTCAATCTCAGCGAAGACCT
GGTTTACATACTGAATCTCCTGGTTATATTTATGTTaagaatggtttaag
tgatgaAAAGTGTGAGGAGTTATGCATTGAAAAGGGTTCTGGTTATGATG
AAATCAATCCTTTTCCTGTTTGGTGGGGAAAGCTTGGTTACACTGGTAAG
CACTGCCCTAATGGTGGTATTTATATGGCATCCAATGTTGATGATTCTTG
TGAAGTTTGGGATTGTCAGATTGTTGCTGATAATAATGGTGAGGAGTTGA
TTCGCAAACATGGAGATATTGAGCATTTACGATGTTTCTTGCCAGAATCA
ACACTTCTACCATCTAATGTTCTCTATTGGATAACTGATCGTACACCTCA
CGAATCTCTGCCATTGAAGAAAGGAACATACAGACAGTTTTTTAGGCTTG
TAACACACAGAGTTTCAGTTTGGTATGAAGATCATTCAACCAAAAATCCT
AATGGAGTTGTCCCTGATCCGAAGATGACTAGGATAgtgaaagggtcaaa
atttgaTGAGGACTATGTCACTGTTGTAGGTTAAGAAACCCCTTGGTTAT
CAACTCTTTGTGTGATTTTTGAAAGCTCAATTTGTATTTAGGGTTATCTC
TAAATTTTTTATTGCCTAgaataaatgaaattttttttgtattttatggc
ttttttttAGACCAACTATGAACTAATTGCAAGAAAATCATGCCATTTTA
TGGAGTATTATGTTATGTTAATAAAGTTATGTTTAAAAAACTGGAGATTT
TGAGTAgtcaaaaaatgacaaaattcatGCCAACTATACTGATGCGCCTT
AATTTAAAGTCTTAACCAATGGTATAACATTTATTTTTTGCATCAAAGAT
TTTGACCCAAATTTGGGGGTCGAGAGTTCCTTTTGTAATGTCAGTCTTTC
GACTATAAAAAGTTTTGTCAGGTGTAATTTGCAAGACTTCTCTCcaagta
atattttttttctaataaatCAATTGTGGTAATTTCCATTATTATTTCAT
GAATCCCAAGGGCCCGCAGTCCCCTactatttgatatttttatggatTTA
ACATCTCTGAAAGCATtcttgtttttgatatttttacgctattttttttt
actataatcAAAACTTCTTCTCAAACTCTGTCAGTCTTGAACAGATATAT
AGATTTCTAAAACAAACGTTCAATTATCAAAAATCGACTAAATTTTTGCT
TACAATTCTGTAGCatataaaaatactaaaaatcgTTTTTGAGCTCGGC Run BLAST on NCBI transcript from alignment at scaffold_473:198586..201784- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067739 ID=TCONS_00067739|Name=TCONS_00067739|organism=Clytia hemisphaerica|type=transcript|length=3199bp|location=Sequence derived from alignment at scaffold_473:198586..201784- (Clytia hemisphaerica)
CGACTTTTGTGGCAAACCCAGTTAAAAAAAACATGACAAATAGGAGGAGA
TGATTGATGAAACCTTCTCTCTGTCATGTTGCAAAGCAGACACAATTCAT
TTTGGAGAGGTAAGTTGTTTGTTACTGATACGGTACAAGTACAAGGTAGT
CTTATTATAGAGAGAGGGAGGATGCATCATATTCATGTTTGTGGCTCCTG
TATTTTCTGGTAGAAACACGTAGAAAATTAAATGGTAGATTTGTTTTCAG
ATTCTAAGCCTTAAGTTTCCATTTAAAGCAAAAGTAAAGTCTATATCCCA
ATTTACCTTCTCTCACCCTCATGTTTTTAAAAAAGACCTCAACCGTAAGT
TGGTCTAATGTCAACATCCCTCTTCTAATAACTAATTCCGACACCAAGTT
TTCGGTTTGTGTAAACCACAGGTCACAGGTCACAGGTTACAGGTTACAGG
TTACAGGTCAGTGATGACAGGTTGACTCTAATCAATGTCATTGCAGAGGA
AAATATGTTTGGAAAACACAAAGAATTATCAAAAAAATAATTCTCAAGCA
ATTTCATCCATATAAAACCATTTCAAACATCAAAATTTAACCATGTGCTT
TTATCAATCTTTCGCAGAGAAATCCAGTGGTGGGTAGACAGGGTGTGCAA
AAGTACATACTAACCAGGGGGTTTAAGCATCTGTGTACGCTTATACATAA
AGGCGGGGAGGGGTTACTCGATTTTTAACCTTTTAGTGCATACCTACTAT
GTATTTAAAAAAAGGTCAAAAGTCAGAATGTCACTAATCCTCTCCTTAAG
GGAGATTTCAATTTGTTTAAGTCTAATGAGATTTGAACTGTAGAGGTCAT
TACAAGCAAACACTGCAAAAGAAAGAGATCTGCATCACATCAGCATTACA
AGCCCTAAATACTATATCGTTTAGCAGCATGAGAAAAATGGTGTGCAACA
TAATCTAGACCTAGGGTGTAGCAGTGGGAGGCAAACACTGATAATACAGT
AGCATTTATAATTTGTAGCTTCCACCATACCAATAAATTAAAGTCAGGCT
GCTTACTGGCAGAATCTGTTTCGTCTCAGAGAAAATCCCTCCTCGAATTA
GAATGTCTACATGCAATATTATAGGTTTTTCGCAGTTTTTGCCCTTACAA
AGAAGTGTTGAAAAATTGAAAATCATTCTGTAAGTTACACAACAACTGCA
AAATGCATAATTATGATTATGCATTATGCATTTTATTTTACGTATTTTAT
ACCTGCTGTCCACAACAAAATTATCATTCATATTAAAACCTATTCACCAC
CAATTTATTCTCATTAGTGTAAAGTAGCTCAAAAGAAGAGAAAAACAAGT
GGTTTATTTACAGAAATAATACTTAACTTTATAATGGCAGATTTGGCTGA
AAAATTGAACGAATTAAAGTTAGAAAAAAAGAATCAAATAAACCCTGTGT
TGCACACCATTTTACAAGGTGTTGCTGATGAGAATTGTCAATTTTCTAAA
NAAATAAACCCTGTGTTGCGCACCATTTTACAAGGTGTTGCTGATGAGAA
TTGTCAATTTTCTAAACTTTATGGTATGCCTCATGTTGTCAAATTGATAT
GGGAAAAGGTTTTAATAGCAATGAGCATGCATGTCAAATTTGGAAAGGAT
GAGAACTATAAACAGGATTTCAACCCACCTGAACCATTCGAAGCACAAAC
TGGTTTTCAAGTTCGTTTTGTAGTTGAATTCCCGAAACCAACTGATATCA
ATATCAACATGATGCCTTTTATCATGGCACAAGAATTTGAGGATACCAAA
TTGCCTGACTATCTTGAACCATATTTTGAACTGATAAGCTCTTCATTATT
CAACGAGTATGACTTTCGTAACATGGAGGAAATTGGTAAAGTTGGTTATC
TAACAATTCATGAAAGTTTGGTCAAGGAAAGTCAATCTCAGCGAAGACCT
GGTTTACATACTGAATCTCCTGGTTATATTTATGTTAAGAATGGTTTAAG
TGATGAAAAGTGTGAGGAGTTATGCATTGAAAAGGGTTCTGGTTATGATG
AAATCAATCCTTTTCCTGTTTGGTGGGGAAAGCTTGGTTACACTGGTAAG
CACTGCCCTAATGGTGGTATTTATATGGCATCCAATGTTGATGATTCTTG
TGAAGTTTGGGATTGTCAGATTGTTGCTGATAATAATGGTGAGGAGTTGA
TTCGCAAACATGGAGATATTGAGCATTTACGATGTTTCTTGCCAGAATCA
ACACTTCTACCATCTAATGTTCTCTATTGGATAACTGATCGTACACCTCA
CGAATCTCTGCCATTGAAGAAAGGAACATACAGACAGTTTTTTAGGCTTG
TAACACACAGAGTTTCAGTTTGGTATGAAGATCATTCAACCAAAAATCCT
AATGGAGTTGTCCCTGATCCGAAGATGACTAGGATAGTGAAAGGGTCAAA
ATTTGATGAGGACTATGTCACTGTTGTAGGTTAAGAAACCCCTTGGTTAT
CAACTCTTTGTGTGATTTTTGAAAGCTCAATTTGTATTTAGGGTTATCTC
TAAATTTTTTATTGCCTAGAATAAATGAAATTTTTTTTGTATTTTATGGC
TTTTTTTTAGACCAACTATGAACTAATTGCAAGAAAATCATGCCATTTTA
TGGAGTATTATGTTATGTTAATAAAGTTATGTTTAAAAAACTGGAGATTT
TGAGTAGTCAAAAAATGACAAAATTCATGCCAACTATACTGATGCGCCTT
AATTTAAAGTCTTAACCAATGGTATAACATTTATTTTTTGCATCAAAGAT
TTTGACCCAAATTTGGGGGTCGAGAGTTCCTTTTGTAATGTCAGTCTTTC
GACTATAAAAAGTTTTGTCAGGTGTAATTTGCAAGACTTCTCTCCAAGTA
ATATTTTTTTTCTAATAAATCAATTGTGGTAATTTCCATTATTATTTCAT
GAATCCCAAGGGCCCGCAGTCCCCTACTATTTGATATTTTTATGGATTTA
ACATCTCTGAAAGCATTCTTGTTTTTGATATTTTTACGCTATTTTTTTTT
ACTATAATCAAAACTTCTTCTCAAACTCTGTCAGTCTTGAACAGATATAT
AGATTTCTAAAACAAACGTTCAATTATCAAAAATCGACTAAATTTTTGCT
TACAATTCTGTAGCATATAAAAATACTAAAAATCGTTTTTGAGCTCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067739-exon-scaffold_473-1575043694:198586..201784 | TCONS_00067739-exon-scaffold_473-1575043694:198586..201784 | Clytia hemisphaerica | exon |
| TCONS_00067739-exon-scaffold_473-1510915933:198586..201784 | TCONS_00067739-exon-scaffold_473-1510915933:198586..201784 | Clytia hemisphaerica | exon |
| TCONS_00067739-exon-scaffold_473-1491911889:198586..201784 | TCONS_00067739-exon-scaffold_473-1491911889:198586..201784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_473 | supercontig | scaffold_473:198586..201784 - |
Blast
The following BLAST results are available for this feature:
|
