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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067737 ID=TCONS_00067737|Name=TCONS_00067737|organism=Clytia hemisphaerica|type=transcript|length=2238bpRun BLAST on NCBI protein sequence of TCONS_00067737-protein >TCONS_00067737-protein ID=TCONS_00067737-protein|Name=TCONS_00067737-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp MKPSLCHVAKQTQFILERRMRCKLKRIFTLLIVFIWLLVLLSYFQAPKVQRun BLAST on NCBI transcript from alignment at scaffold_473:169933..201781- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067737 ID=TCONS_00067737|Name=TCONS_00067737|organism=Clytia hemisphaerica|type=transcript|length=31849bp|location=Sequence derived from alignment at scaffold_473:169933..201781- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_473:169933..201781- >TCONS_00067737 ID=TCONS_00067737|Name=TCONS_00067737|organism=Clytia hemisphaerica|type=CDS|length=26352bp|location=Sequence derived from alignment at scaffold_473:169933..201781- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00067737 vs. Swiss-Prot (Human)
Match: GLT16 (Polypeptide N-acetylgalactosaminyltransferase 16 OS=Homo sapiens GN=GALNT16 PE=1 SV=2) HSP 1 Score: 439.499 bits (1129), Expect = 1.140e-144 Identity = 230/486 (47.33%), Postives = 311/486 (63.99%), Query Frame = 3
Query: 222 SSTFDETSYISKTKLSESEDPYHRHKFNQRISDELDSDRPIPDTRPPQCLEESYDKRLSSTSIIITFHNEARSALLRTIKSVLDRTPPHLLTEIILVDDFSANEKDGALLKDLPKIVLMRNDKREGLIRSRLKGVSVAKSSILTFLDSHCEVNVGWIEPLLAQVEQDPLAIASPVIDIIKTDTLEYKASSNYLKGGFDWNMHFIWEPL-LEKEMKDHKADTTHTISTPVIAGGLFTVQKQWFNQLGQYDPLLEIWGAENFEISFKTWMCGGSLKIIPCSRIGHIFRKSHPYEFPLGNGHTYLMNVRRVAEVWMDRYKRIFYRARGGNMNEPLPXXXXXXXXXXXXXCRPFDWYLMEVYPELRVPNVDELAYGEIKQIYKGQSYCLSESKTSKVLAVK-CIPNVKKMQ----WVMSVTGMIQNEKDKCLYA-----SKKRKRISLKDCDNSDFNQHWKFMIRERLRHQATNLCIERKSDGSLLLARC 1646
S FDE +Y+S +L EDPY +H FNQ SD+L DRPI DTR C SY L +TS+IITFHNEARS LLRT+KSVL+RTP +L+ EIILVDDFS++ +D LL +PK+ +RND+REGLIRSR++G VA +++LTFLDSHCEVN W+ P+L +V++D + SP+ID+I D Y A+S L+GGFDW++HF WE + LE++M + D T I TPVIAGG+F + K WFN LG+YD ++IWG ENFE+SF+ WMCGGSL+I+PCSR+GH+FRK HPY FP GN TY+ N +R AEVWMD YK+ +Y AR + + + R R+++ C+ F WYL VYPEL VP V E G IKQ + +L + C + K Q W+ S +IQ ++ KCL A S + L+ C+ + Q W+ ++H + LC+E K L+ ++C
Sbjct: 65 SKGFDEKAYLSAKQLKAGEDPYRQHAFNQLESDKLSPDRPIRDTRHYSCPSVSYSSDLPATSVIITFHNEARSTLLRTVKSVLNRTPANLIQEIILVDDFSSDPEDCLLLTRIPKVKCLRNDRREGLIRSRVRGADVAAATVLTFLDSHCEVNTEWLPPMLQRVKEDHTRVVSPIIDVISLDNFAYLAASADLRGGFDWSLHFKWEQIPLEQKMT--RTDPTRPIRTPVIAGGIFVIDKSWFNHLGKYDAQMDIWGGENFELSFRVWMCGGSLEIVPCSRVGHVFRKRHPYNFPEGNALTYIRNTKRTAEVWMDEYKQYYYEARPSAIGKAFGSVATRIEQRKKMNCKSFRWYLENVYPELTVP-VKEALPGIIKQGVNCLESQGQNTAGDFLLGMGICRGSAKNPQPAQAWLFS-DHLIQ-QQGKCLAATSTLMSSPGSPVILQMCNPREGKQKWR-RKGSFIQHSVSGLCLETKP-AQLVTSKC 543 The following BLAST results are available for this feature:
BLAST of TCONS_00067737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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