TCONS_00067729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067729
Unique NameTCONS_00067729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length990

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067729 ID=TCONS_00067729|Name=TCONS_00067729|organism=Clytia hemisphaerica|type=transcript|length=990bp
GTTTTGTCAACCTCATTACATAATTCGTAACAGAAATTCTTCAATGACCT
TATTTGTAATAGCTATTATAATCAATTGTAAATACTGTATAAAATACACC
GAAGCTTTGGTAACTAGCTCACTTGACATCGAACACTTAAGATACACATt
ctgaaaaacaaggaaaagTTGAAGAAGAAACTCAAACAACAATGAAGACA
CTTTTTCTTCTTGCTGCAATGCTGGCAACAGCTTttgCTTTTGGTCCAAT
GACAGTTCCATTGATCACCAAGACAACTACACCACCAATTGACTGTGATG
GTCATCCAAGTCCATTTACATTACAGTTCTGTGAATACAAACCAAACAAA
TTATTCAAACATCCAAACCATCCAAGATGGTTCATCTCTTGTGGAGGTAC
TGAAGGAAACATTGGTGGAACTTGCCAACGATGTGATCCTCACCACGAAT
TAGAGTTGAACGAAGATTGCCAAATGTGCTTGTACCCTGGAGAAAaatgC
CCAAAGAAATTACCTCCACCAGTCGAATGGTACTGTAAGTatctaaatat
ttcttttttatttcgcTGAGAACCCTGTCTCCTCCTAGTGGAAAATCATT
GTTTTATCTATACCAAGGAACCTGGAAGAATGGACTGGAAAAAAGACCAA
AAGTTTTCTTCGAATCAGAGAAAGATTTTAATTACAGAGAGTAACATTGC
ACTTTTTCATCATTTGTGCTTCTAAAAATGCATATTTTCTAATCTACAAG
GAGGAAATGACTTCTAGAGTCAAAATGTTGGcaacatttcaaattatttt
caggaaaatcatttcaatttgaatttagCGGATCTTCTTTACACAATAGT
TACACCTTCATTAGAGTTTTGACGTCATCGAAACTAAgagaaataaacca
gctgcgctggaagctccggcttaagagattaaaagatgtgaaagatgagc
ttgttgagttagttgtgttagaacgttgcccacaaactgc
Run BLAST on NCBI

protein sequence of TCONS_00067729-protein

>TCONS_00067729-protein ID=TCONS_00067729-protein|Name=TCONS_00067729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MKTLFLLAAMLATAFAFGPMTVPLITKTTTPPIDCDGHPSPFTLQFCEYK
PNKLFKHPNHPRWFISCGGTEGNIGGTCQRCDPHHELELNEDCQMCLYPG
EKCPKKLPPPVEWYCKYLNISFLFR
Run BLAST on NCBI

transcript from alignment at scaffold_473:78912..80618-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067729 ID=TCONS_00067729|Name=TCONS_00067729|organism=Clytia hemisphaerica|type=transcript|length=1707bp|location=Sequence derived from alignment at scaffold_473:78912..80618- (Clytia hemisphaerica)
GTTTTGTCAACCTCATTACATAATTCGTAACAGAAATTCTTCAATGACCT
TATTTGTAATAGCTATTATAATCAATTGTAAATACTGTATAAAATACACC
GAAGCTTTGGTAACTAGCTCACTTGACATCGAACACTTAAGATACACATT
CTGAAAAACAAGGAAAAGTTGAAGAAGAAACTCAAACAACAATGAAGACA
CTTTTTCTTCTTGCTGCAATGCTGGCAACAGCTTTTGGTATGTTTTTATT
TTGTAGAAATCAAAGCAAAGAATCAGAGTCTATGGTTTTAGATATTATAT
TGTACTTTGAAAGTATATAGGGGGTAATAATTGCGATAGTAGCGTTGATA
GAACCTTGAAAAGTAATGGCAGCATTGGCTAATCTTTATTTCACGTTACT
GGTCATACATAAACGTATCAACGAAAATTAATGTCATTACTATCTTCTTT
TCATAGCTTTTGGTCCAATGACAGTTCCATTGATCACCAAGACAACTACA
CCACCAATTGACTGTAAGTCTTCATGTTTGTTTGAGTTTAATTAGCCGTA
AAAGTTAACACTCTCTTCATCCTTTACTTAGATCTTAAAGAAACAAGGAA
ATGGTGGCACTATTTAGCCAGCCATCTTCAATTTAAACTTTAAGAGTAGC
ATATAAGGCTCAGTGAAACTGGAACGCCTGTATTGAGCTAGGTTTTTCTA
GATATCTTCAAATGTTCATCGGTAAATTTACTTGATTATCACCATTTGCT
GGTACCAGATTTTAGCAACATATTTTCTGTCTCTAACATTCAAATATCCT
TCATTTTCCTCATTTTCATCTTCATTTACTTCTTCTCTTCAGGTGATGGT
CATCCAAGTCCATTTACATTACAGTTCTGTGAATACAAACCAAACAAATT
ATTCAAACATCCAAACCATCCAAGATGGTTCATCTCTTGTGGAGGTACTG
AAGGAAACATTGGTGGAACTTGCCAACGATGTGATCCTCACCACGAATTA
GAGTTGAACGAAGATTGCCAAATGTGCTTGTACCCTGGAGAAAGTAAGGA
AACAAAATGAAATCAACCTTTTAGAACGGCTGTTGGAACAAACAGTTAAT
TCTGTTTCAAAAATACACTTTCAATTTGGGAACCTGAATTATTCAAAGAA
GATTCTTATTAACTTGAACCGTTGACGACTTTGTTTTGACTAATTTCTTT
TTTAATTTTCAGAATGCCCAAAGAAATTACCTCCACCAGTCGAATGGTAC
TGTAAGTATCTAAATATTTCTTTTTTATTTCGCTGAGAACCCTGTCTCCT
CCTAGTGGAAAATCATTGTTTTATCTATACCAAGGAACCTGGAAGAATGG
ACTGGAAAAAAGACCAAAAGTTTTCTTCGAATCAGAGAAAGATTTTAATT
ACAGAGAGTAACATTGCACTTTTTCATCATTTGTGCTTCTAAAAATGCAT
ATTTTCTAATCTACAAGGAGGAAATGACTTCTAGAGTCAAAATGTTGGCA
ACATTTCAAATTATTTTCAGGAAAATCATTTCAATTTGAATTTAGCGGAT
CTTCTTTACACAATAGTTACACCTTCATTAGAGTTTTGACGTCATCGAAA
CTAAGAGAAATAAACCAGCTGCGCTGGAAGCTCCGGCTTAAGAGATTAAA
AGATGTGAAAGATGAGCTTGTTGAGTTAGTTGTGTTAGAACGTTGCCCAC
AAACTGC

Coding sequence (CDS) from alignment at scaffold_473:78912..80618-

>TCONS_00067729 ID=TCONS_00067729|Name=TCONS_00067729|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_473:78912..80618- (Clytia hemisphaerica)
AATGCCCAAAGAAATTACCTCCACCAGTCGAATGGTACTGTAAGTATCTA
AATATTTCTTTTTTATTTCGCTGAGTGATGGTCATCCAAGTCCATTTACA
TTACAGTTCTGTGAATACAAACCAAACAAATTATTCAAACATCCAAACCA
TCCAAGATGGTTCATCTCTTGTGGAGGTACTGAAGGAAACATTGGTGGAA
CTTGCCAACGATGTGATCCTCACCACGAATTAGAGTTGAACGAAGATTGC
CAAATGTGCTTGTACCCTGGAGAAACTTTTGGTCCAATGACAGTTCCATT
GATCACCAAGACAACTACACCACCAATTGACTATGAAGACACTTTTTCTT
CTTGCTGCAATGCTGGCAACAGCTTTTGAATGCCCAAAGAAATTACCTCC
ACCAGTCGAATGGTACTGTAAGTATCTAAATATTTCTTTTTTATTTCGCT
GAGTGATGGTCATCCAAGTCCATTTACATTACAGTTCTGTGAATACAAAC
CAAACAAATTATTCAAACATCCAAACCATCCAAGATGGTTCATCTCTTGT
GGAGGTACTGAAGGAAACATTGGTGGAACTTGCCAACGATGTGATCCTCA
CCACGAATTAGAGTTGAACGAAGATTGCCAAATGTGCTTGTACCCTGGAG
AAACTTTTGGTCCAATGACAGTTCCATTGATCACCAAGACAACTACACCA
CCAATTGACTATGAAGACACTTTTTCTTCTTGCTGCAATGCTGGCAACAG
CTTTTGAATGCCCAAAGAAATTACCTCCACCAGTCGAATGGTACTGTAAG
TATCTAAATATTTCTTTTTTATTTCGCTGAGTGATGGTCATCCAAGTCCA
TTTACATTACAGTTCTGTGAATACAAACCAAACAAATTATTCAAACATCC
AAACCATCCAAGATGGTTCATCTCTTGTGGAGGTACTGAAGGAAACATTG
GTGGAACTTGCCAACGATGTGATCCTCACCACGAATTAGAGTTGAACGAA
GATTGCCAAATGTGCTTGTACCCTGGAGAAACTTTTGGTCCAATGACAGT
TCCATTGATCACCAAGACAACTACACCACCAATTGACTATGAAGACACTT
TTTCTTCTTGCTGCAATGCTGGCAACAGCTTTTGAATGCCCAAAGAAATT
ACCTCCACCAGTCGAATGGTACTGTAAGTATCTAAATATTTCTTTTTTAT
TTCGCTGAGTGATGGTCATCCAAGTCCATTTACATTACAGTTCTGTGAAT
ACAAACCAAACAAATTATTCAAACATCCAAACCATCCAAGATGGTTCATC
TCTTGTGGAGGTACTGAAGGAAACATTGGTGGAACTTGCCAACGATGTGA
TCCTCACCACGAATTAGAGTTGAACGAAGATTGCCAAATGTGCTTGTACC
CTGGAGAAACTTTTGGTCCAATGACAGTTCCATTGATCACCAAGACAACT
ACACCACCAATTGACTATGAAGACACTTTTTCTTCTTGCTGCAATGCTGG
CAACAGCTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042293XLOC_042293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067729-exon-scaffold_473-1575043694:80382..80618TCONS_00067729-exon-scaffold_473-1575043694:80382..80618Clytia hemisphaericaexon
TCONS_00067729-exon-scaffold_473-1575043694:80106..80162TCONS_00067729-exon-scaffold_473-1575043694:80106..80162Clytia hemisphaericaexon
TCONS_00067729-exon-scaffold_473-1575043694:79576..79776TCONS_00067729-exon-scaffold_473-1575043694:79576..79776Clytia hemisphaericaexon
TCONS_00067729-exon-scaffold_473-1575043694:78912..79406TCONS_00067729-exon-scaffold_473-1575043694:78912..79406Clytia hemisphaericaexon
TCONS_00067729-exon-scaffold_473-1510915933:80382..80618TCONS_00067729-exon-scaffold_473-1510915933:80382..80618Clytia hemisphaericaexon
TCONS_00067729-exon-scaffold_473-1510915933:80106..80162TCONS_00067729-exon-scaffold_473-1510915933:80106..80162Clytia hemisphaericaexon
TCONS_00067729-exon-scaffold_473-1510915933:79576..79776TCONS_00067729-exon-scaffold_473-1510915933:79576..79776Clytia hemisphaericaexon
TCONS_00067729-exon-scaffold_473-1510915933:78912..79406TCONS_00067729-exon-scaffold_473-1510915933:78912..79406Clytia hemisphaericaexon
TCONS_00067729-exon-scaffold_473-1491911889:80382..80618TCONS_00067729-exon-scaffold_473-1491911889:80382..80618Clytia hemisphaericaexon
TCONS_00067729-exon-scaffold_473-1491911889:80106..80162TCONS_00067729-exon-scaffold_473-1491911889:80106..80162Clytia hemisphaericaexon
TCONS_00067729-exon-scaffold_473-1491911889:79576..79776TCONS_00067729-exon-scaffold_473-1491911889:79576..79776Clytia hemisphaericaexon
TCONS_00067729-exon-scaffold_473-1491911889:78912..79406TCONS_00067729-exon-scaffold_473-1491911889:78912..79406Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067729-proteinTCONS_00067729-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_473supercontigscaffold_473:78912..80618 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0478699	0.0944758	0.06172	0	0.383473	0.251987	0.306592	0.233834	0.0399554	0.299492	0.050035	0.884293	13.7612	18.8228	254.257	84.0487	6.06288	2.36357	0.341157	0.454724	0.972543	0.40238	0.0533862	0.100802	0.501406	0.371537	0.327457	0.0757953	0.24403	0.189601
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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