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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067727 ID=TCONS_00067727|Name=TCONS_00067727|organism=Clytia hemisphaerica|type=transcript|length=181bp
AGCATTTGTTCAGAGACCACATAGATAACCAGTAGTGATATAAGGTAACT
TCGTACTTTGGAGAGTTGGAAAATAGACAAAGGATGAAGTGGCAGGCTGT
AATAGCTTTCATAGTTTGTTTTCTATTGATTGGAATTCGTGCAACAGAGG
TGGACGAGGGAGACGAACCGACTGAAACTGT Run BLAST on NCBI transcript from alignment at scaffold_473:132279..134968+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067727 ID=TCONS_00067727|Name=TCONS_00067727|organism=Clytia hemisphaerica|type=transcript|length=2690bp|location=Sequence derived from alignment at scaffold_473:132279..134968+ (Clytia hemisphaerica)
AGCATTTGTTCAGAGACCACATAGATAACCAGTAGTGATATAAGGTAACT
TCGTACTTTGGAGAGTTGGAAAATAGACAAAGGATGAAGTGGCAGGCTGT
AATAGCTTTCATAGTTTGTTTTCTATTGATTGGAATTCGTGCAACAGAGG
TAAACGGGATATTTCAAAGTGGTTAGGACCAGAGACCAGAGCTGTATCTA
GGAAAGTGTCTTTACAAAAAAGAAGTGATTTTGAaacacctctgtctcac
agcctcgTTGGAACTTTTATATCCTCAGTGAGGatgaaaattcctattga
aatcccaatgtgggtagaaattctattgttcaaaggttaaagaatcaagt
ggggatggttttggagtgcaatttttaaacttttaatttcgagtggggat
gaaatataagtcaatttcccagtggggctaaaattccagggtattgTCCT
ACCGGGAACGAAATTGTTGCCAGATTTTCCAgttctgtgacacaggggtg
ttttgaaaagtttcttcAGACAAAAGGTTATAACTTAACATCTACTCTAA
TCGGataattttcgcgaggatttaattccgcaaaaattagttgaaTGAGG
CAATAAAAACGGCAAAATAGCAAATTCACAGTGTATTTCAATACGCTGAA
AAAAGTAGAAGTCGCTACTGAAAGTGTGATTTTGCCCTGAGTCAGTGATT
TCAAGCGATTTCGCGAGATTTATTTTCgcaaaaatctctaaaatttgtga
aaatacgaaattaagtcttgcaaaaattaatccgAATAAATTACTGGAGT
ATTTGACAAGCTTAtatcgcaaaatttaaaattagacTATCGTCTTGCTA
ATAAAAATAGCTTTGAATACAACAAATGCTTCGCTTGTGCTTAGGAAGTT
CGTCAAATACAAAATCGTTAAAACACCGATAAAACCACCCTTCTACTTTA
TCCACTTGCTTACAAAAAGTTAGTATTGaatcatttgacaaaaattaaaa
ttgctaactgtacagttgacgctctctaattcgatcttcaacgGGGAATT
AGATtgtcatcgaataagggagctaaAGGCCGGTGTCCACTCTTATAATT
GAAATACATAGACCCCCCTCTGGGAGGGCGTTGAATTACAACGTGTTTGC
CGTCTTAAATCGCACCCACACAATTTGGAAAGTTCCATTTAGATTCAAAA
TTACTTGCAATTCCTCTCCAGTCCTCAgagcattgggctcttccagaaaa
aatccgttcatggggggtggaggatgaattgtccaggggtattgaaaaaa
aaaataccaaaaaattgcaatgtccagggggtaaattccaatgtccaggg
gtaattttttgtgtccacggggttgatttgatgtttgtccaggggtataa
cccgtgtccagggggttaaaaatcaaaatgtccaagggtaattcatgaaa
agaataatatatcctccaccccccatgaacggattttttctggaagagcc
cattgtggCGCCTTTAAAAATCCATAACACAAAAGTTGATGATTCCAAAT
GTGGCGGCAAGTATCTCTAACGATTCTCTCAACAGTAGACCGGCTCCaaa
tgtaaaatgtaaaatgtaaaatgtaaaaacatttttgcataatctttttt
tcaaattttgctgacgtcagcagaaatcagcaaaatacgaaaatttgcaa
taaagtgctgacatcagcaaaatttcaaaaaatattttttcaaaatgatc
cttttaatgatgtacaactttggtccaaatttcatgttcataccattagc
caaactggagttatttaaagaacaagttttgctgacgtcagcatttttta
gtttttgcggtttttcgcaaaattggcaaaacctaaatttaagtaacacc
gattttcatgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattatgctaggagggg
tggaATTGCCTCCGAaagattaacgaaaatttggacacgcattaatttac
cagAGTCCTTTTTCTCTTCTATCTTTGTAAATATTTCTCACCCAAAATCT
CTTATTCGATTTTGGTTTGTTATCTTGCAAAGTTCTTAAATATTGTAGAT
GTCTCAAACTTGTTGATGCATGTCTTTTTCGCTTTTTCTTCTATAAATCA
AAGCAAGAAGAAGTAGTCTCCTTCTGTTTATTACAGCCgccatatttgtt
tatgttttttttgttttgatcccGTGATCAAGACGGCATTTTTGACGTAA
TGTTTACTCTGTGCGACCAATCAGGAAAAGGGAAGAAAATCTTTCGCGCG
CTTCGCCCGAAAGTGGACACCGGCCTTTACAGTATCgaatagagcgtcgt
ttatgagagcttCTTGTTGACAGGGACTTTAAATTTTATAGAGTAAAAGG
ggcatatcgaatagtagaacgtcgaattagagagcgtcaactgtatctcG
AATTTAACCAATGCGTTTTTCTTCTCAGGTAATGTAGTTCGTGAAATACT
TTAAGTCGTTGAGTCACCGATAAACTACCCTATAACTTTATATCAACATT
ATTTACAGGTGGACGAGGGAGACGAACCGACTGAAACTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067727-exon-scaffold_473-1491911889:132279..132427 | TCONS_00067727-exon-scaffold_473-1491911889:132279..132427 | Clytia hemisphaerica | exon |
| TCONS_00067727-exon-scaffold_473-1510915933:132279..132427 | TCONS_00067727-exon-scaffold_473-1510915933:132279..132427 | Clytia hemisphaerica | exon |
| TCONS_00067727-exon-scaffold_473-1575043694:132279..132427 | TCONS_00067727-exon-scaffold_473-1575043694:132279..132427 | Clytia hemisphaerica | exon |
| TCONS_00067727-exon-scaffold_473-1491911889:134937..134968 | TCONS_00067727-exon-scaffold_473-1491911889:134937..134968 | Clytia hemisphaerica | exon |
| TCONS_00067727-exon-scaffold_473-1510915933:134937..134968 | TCONS_00067727-exon-scaffold_473-1510915933:134937..134968 | Clytia hemisphaerica | exon |
| TCONS_00067727-exon-scaffold_473-1575043694:134937..134968 | TCONS_00067727-exon-scaffold_473-1575043694:134937..134968 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_473 | supercontig | scaffold_473:132279..134968 + |
Blast
The following BLAST results are available for this feature:
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