TCONS_00067716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067716
Unique NameTCONS_00067716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067716 ID=TCONS_00067716|Name=TCONS_00067716|organism=Clytia hemisphaerica|type=transcript|length=575bp
TAGTCGGGTTTTCGAATAAAGTTAAATTTGTGTTATTTACCTTGTATTTA
CACAATGTCACATTGTTTTGCCCCTTATGTTTAAAATATTAATCAATGAC
GTGATGATTTCCCCTGACCACAGTCTTTTCCTGTATACTTCTCTTCTCCT
CTTTGTCTATTACTCTCCTTCAAGGAAGCTCTGTGGTTAGGAAATATGAT
ATGGATCACCTCAACTGAAAAGTCATTTTATGCGTCACTATGAAAGTATA
ATATTCCCCTAGCAAATATGGATGTAAACAAACCAACGTGTTATAACAAG
TTTCGATTTAGTTTGGTTTCCTTATTATGACGTATTTTCTATAGAATGTA
ATTAAGACATTTGTAATACAGATTAAAATTGGATAACGACTCTTGTAATA
CCCACGctattgaaaataattaatttttctacATTAGATCTTTTCATTTG
AAAGCAATTGGCACAAATTTTGTTGGATGGTGCCAATTTAAAAGATAACA
ATGAACCAAACTACTCGTTTCCACCTCTATGTAACGAAAAATATAAGTTT
TCTTTCCTCAAAGATACCTTAGTCT
Run BLAST on NCBI

transcript from alignment at scaffold_472:403800..404374

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067716 ID=TCONS_00067716|Name=TCONS_00067716|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at scaffold_472:403800..404374 (Clytia hemisphaerica)
AGACTAAGGTATCTTTGAGGAAAGAAAACTTATATTTTTCGTTACATAGA
GGTGGAAACGAGTAGTTTGGTTCATTGTTATCTTTTAAATTGGCACCATC
CAACAAAATTTGTGCCAATTGCTTTCAAATGAAAAGATCTAATgtagaaa
aattaattattttcaatagCGTGGGTATTACAAGAGTCGTTATCCAATTT
TAATCTGTATTACAAATGTCTTAATTACATTCTATAGAAAATACGTCATA
ATAAGGAAACCAAACTAAATCGAAACTTGTTATAACACGTTGGTTTGTTT
ACATCCATATTTGCTAGGGGAATATTATACTTTCATAGTGACGCATAAAA
TGACTTTTCAGTTGAGGTGATCCATATCATATTTCCTAACCACAGAGCTT
CCTTGAAGGAGAGTAATAGACAAAGAGGAGAAGAGAAGTATACAGGAAAA
GACTGTGGTCAGGGGAAATCATCACGTCATTGATTAATATTTTAAACATA
AGGGGCAAAACAATGTGACATTGTGTAAATACAAGGTAAATAACACAAAT
TTAACTTTATTCGAAAACCCGACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042281XLOC_042281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067716-exon-scaffold_472-1491911889:403800..404374TCONS_00067716-exon-scaffold_472-1491911889:403800..404374Clytia hemisphaericaexon
TCONS_00067716-exon-scaffold_472-1510915933:403800..404374TCONS_00067716-exon-scaffold_472-1510915933:403800..404374Clytia hemisphaericaexon
TCONS_00067716-exon-scaffold_472-1575043694:403800..404374TCONS_00067716-exon-scaffold_472-1575043694:403800..404374Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:403800..404374 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.193867	0.189051	0.109753	0.107376	0.130721	0.206594	0.623118	0.116671	0.245053	0.708253	0	0.387344	0.322338	0.669502	0.220169	0.0590687	0.0727678	0.372923	0	0.107827	0.281163	0.137141	0.111142	0.101044	0.104073	0.371532	0.132915	0.283702	0.322767	0.54808
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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