TCONS_00067709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067709
Unique NameTCONS_00067709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067709 ID=TCONS_00067709|Name=TCONS_00067709|organism=Clytia hemisphaerica|type=transcript|length=329bp
CTCCTTTTTTTGCCAAAGTTATATTATAGAAACAAAATCGAATacaaaat
ataataattttatcaaatatatatCCTGTAGCAGCAGTTGTAGTAGTAGT
GTTGAAATAATCTCAAGTTTATCTCGCCCAATTAAAACACGCAATTCACA
TGCAAAAACCATTTTCGTTTTCTCCTACCAATGAGAATGCACGATATGAG
AtacttgaggaaacccagggTGAACACAACATGGCGGGGAAATAAGGGGG
CGGGGAAATAAGGGGGCCAATCTTATGGCTGGCGCTTcttttttgtgctt
tggttttaggtcaatgtttttggtttttc
Run BLAST on NCBI

transcript from alignment at scaffold_472:332491..332819

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067709 ID=TCONS_00067709|Name=TCONS_00067709|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at scaffold_472:332491..332819 (Clytia hemisphaerica)
gaaaaaccaaaaacattgacctaaaaccaaagcacaaaaaagAAGCGCCA
GCCATAAGATTGGCCCCCTTATTTCCCCGCCCCCTTATTTCCCCGCCATG
TTGTGTTCAccctgggtttcctcaagtaTCTCATATCGTGCATTCTCATT
GGTAGGAGAAAACGAAAATGGTTTTTGCATGTGAATTGCGTGTTTTAATT
GGGCGAGATAAACTTGAGATTATTTCAACACTACTACTACAACTGCTGCT
ACAGGatatatatttgataaaattattatattttgtATTCGATTTTGTTT
CTATAATATAACTTTGGCAAAAAAAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042274XLOC_042274Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067709-exon-scaffold_472-1491911889:332491..332819TCONS_00067709-exon-scaffold_472-1491911889:332491..332819Clytia hemisphaericaexon
TCONS_00067709-exon-scaffold_472-1510915933:332491..332819TCONS_00067709-exon-scaffold_472-1510915933:332491..332819Clytia hemisphaericaexon
TCONS_00067709-exon-scaffold_472-1575043694:332491..332819TCONS_00067709-exon-scaffold_472-1575043694:332491..332819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:332491..332819 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.591275	0.864879	1.67368	1.1617	1.99342	2.8354	2.28053	1.0675	0.747384	0.61717	2.69568	2.36271	0.786476	0	1.17511	0.900765	1.3316	1.59232	0	0.65772	1.14336	0.418267	0.338972	0.924524	0	1.13313	1.21613	0.865259	0.984403	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top