TCONS_00067708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067708
Unique NameTCONS_00067708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067708 ID=TCONS_00067708|Name=TCONS_00067708|organism=Clytia hemisphaerica|type=transcript|length=375bp
Gcattaaagttttaaaggtattcggccgctagcgtaggtcttcgttcgtt
gacggaaaaaaaatccgCATAGCCGACTAAAGAGCAAACGGACAAATCAG
ATACACGATAAAAACTCGATAACGAACAACCACTGACAACACCTGCAAGA
GAAGAATCCGAGCATTCCGAACTCGAAAGACGAAACGATATGGTACGATA
TCCTAACATTGGTCGATGTTATCATATATTTCCATCGAAAGAACTGACGA
AATATACGTAATTACAAACGAATTAACGAGAGGCGGTAATTATGAACGAT
TTAATGAGAGATCGTATTTGCGAGAGACTCAAGAGTAGTGCCTTAACCCT
CGAGGACGCGACCGTGCATTGGGNN
Run BLAST on NCBI

transcript from alignment at scaffold_472:319632..320006

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067708 ID=TCONS_00067708|Name=TCONS_00067708|organism=Clytia hemisphaerica|type=transcript|length=375bp|location=Sequence derived from alignment at scaffold_472:319632..320006 (Clytia hemisphaerica)
NNCCCAATGCACGGTCGCGTCCTCGAGGGTTAAGGCACTACTCTTGAGTC
TCTCGCAAATACGATCTCTCATTAAATCGTTCATAATTACCGCCTCTCGT
TAATTCGTTTGTAATTACGTATATTTCGTCAGTTCTTTCGATGGAAATAT
ATGATAACATCGACCAATGTTAGGATATCGTACCATATCGTTTCGTCTTT
CGAGTTCGGAATGCTCGGATTCTTCTCTTGCAGGTGTTGTCAGTGGTTGT
TCGTTATCGAGTTTTTATCGTGTATCTGATTTGTCCGTTTGCTCTTTAGT
CGGCTATGcggattttttttccgtcaacgaacgaagacctacgctagcgg
ccgaatacctttaaaactttaatgC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042273XLOC_042273Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067708-exon-scaffold_472-1491911889:319632..320006TCONS_00067708-exon-scaffold_472-1491911889:319632..320006Clytia hemisphaericaexon
TCONS_00067708-exon-scaffold_472-1510915933:319632..320006TCONS_00067708-exon-scaffold_472-1510915933:319632..320006Clytia hemisphaericaexon
TCONS_00067708-exon-scaffold_472-1575043694:319632..320006TCONS_00067708-exon-scaffold_472-1575043694:319632..320006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:319632..320006 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
82.7705	80.6895	31.2754	25.3145	203.546	148.884	337.702	347.879	302.544	258.603	220.226	270.539	271.197	248.891	147.977	170.498	212.938	240.844	128.416	106.63	223.211	208.014	139.781	145.939	435.427	420.04	161.964	144.622	123.431	109.705
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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