TCONS_00067703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067703
Unique NameTCONS_00067703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067703 ID=TCONS_00067703|Name=TCONS_00067703|organism=Clytia hemisphaerica|type=transcript|length=575bp
atatagaatttctatccccattgggatttcaatataaattttCGTCCCCA
TTCTGGGAAAAGTCCCACCGAggctgtgagaaaggggtgtattaTTGTTT
TTTAGCACGAGTTTATCACATGATAATATCTCACTCacgattatctttcc
aacaaataTAAAATCGCATTCCTGTAAACCTTTTGCTAGATgcgatgtca
tgttgaatgATTAAAAACTCCAGAAGCTAAACAATTAGACAAGAAGGCAT
GATTAGTAAACGCGTGTactaaatattttcttaaaattgtttTGATGCGA
AAATTCTATTTCAAACTCTATCAAAAGTCATTCACATTCGTATTTCTACT
GAcagctaatttgaaaagaaCTTTAGGTGAAGGATCCAACTTGTAGATAT
GATAGTCAAGATTTTGACTCCCTGCGTGATACTAGACACTAAAGGGAAGT
CAACAACTTTCATACAATCAATTATTCATGCAGTCATCTAATCCACACTT
CCTCttacaaaatatccaaaaactGAAAAGTACTTCCGCATACGTGAGAA
AGTACAATAAGATCCTCCCTTTTAG
Run BLAST on NCBI

transcript from alignment at scaffold_472:70354..70928

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067703 ID=TCONS_00067703|Name=TCONS_00067703|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at scaffold_472:70354..70928 (Clytia hemisphaerica)
CTAAAAGGGAGGATCTTATTGTACTTTCTCACGTATGCGGAAGTACTTTT
CagtttttggatattttgtaaGAGGAAGTGTGGATTAGATGACTGCATGA
ATAATTGATTGTATGAAAGTTGTTGACTTCCCTTTAGTGTCTAGTATCAC
GCAGGGAGTCAAAATCTTGACTATCATATCTACAAGTTGGATCCTTCACC
TAAAGttcttttcaaattagctgTCAGTAGAAATACGAATGTGAATGACT
TTTGATAGAGTTTGAAATAGAATTTTCGCATCAaaacaattttaagaaaa
tatttagtACACGCGTTTACTAATCATGCCTTCTTGTCTAATTGTTTAGC
TTCTGGAGTTTTTAATcattcaacatgacatcgcATCTAGCAAAAGGTTT
ACAGGAATGCGATTTTAtatttgttggaaagataatcgtGAGTGAGATAT
TATCATGTGATAAACTCGTGCTAAAAAACAAtaatacacccctttctcac
agccTCGGTGGGACTTTTCCCAGAATGGGGACGaaaatttatattgaaat
cccaatggggatagaaattctatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042268XLOC_042268Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067703-exon-scaffold_472-1491911889:70354..70928TCONS_00067703-exon-scaffold_472-1491911889:70354..70928Clytia hemisphaericaexon
TCONS_00067703-exon-scaffold_472-1510915933:70354..70928TCONS_00067703-exon-scaffold_472-1510915933:70354..70928Clytia hemisphaericaexon
TCONS_00067703-exon-scaffold_472-1575043694:70354..70928TCONS_00067703-exon-scaffold_472-1575043694:70354..70928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:70354..70928 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0969337	0.0945257	0	0	0.392162	0.103297	0.124624	0.466684	0.327332	0.101179	0	0.774688	0.25787	0.200851	0.330253	0.0590687	0.218303	0	0	0.215654	0.281163	0.137141	0	0.202089	0	0.185766	0	0.567403	0	0.225422
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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