TCONS_00067700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067700
Unique NameTCONS_00067700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067700 ID=TCONS_00067700|Name=TCONS_00067700|organism=Clytia hemisphaerica|type=transcript|length=2304bp
ACCTGATAATTTGCTTTTGAACGGTCTTGACCCCTCTCATTGCATTCTAC
GGAACTTGAAATCTCATTGTAAGACAACCAAATGAGTGGTAAACTGTCAG
CTCTGCAAGTTACATTCTTCATAGCAGCTTTGCATTGACTTTGAACTCCT
TTTTTTAATCCTAATGATACACTGGATGGAAAGTAAACACCACAAAAGGC
CACAAATGATCGACTTTGAGGATTTTGTTCAGCTTTTCTAACTATTCTAG
GACTGATTTCGTCAACATACTGGCAGCGATAGAAATAGTGATTGGTTTCT
TTTCAGGTATTGATTATCTGTGCCTTGCTAATTCAACAAAATGCTTTAGG
AGGTCCTCCTAAATGTTTAAAGTCAAATGGGTCACCTCTCTCTTTGAATG
GTTTGAATCTTTACGCGTTCTTTTTCATGAGGGATGTTTTGCAAACGAAT
GGTTGATAGCTTTTGGCTCTGgatcataaaatttgatgacggTTTGCTGG
CTAAGAAACAGACTAGAAGCAAGACATGGAATACAGCCTACTCTTATGTG
TTTTAACGGACAGTCACAAGCTTTTACTCGCACAAtgttaaatttcgatt
ttacaacaagaatctgaTCAAAAGtagaaaacaaatttgaaaattaaaga
aactttttctcaCGTAACTTTCTTTTGCTGTGCAACGATCACAAATGGAG
TTTTTCTTTCTTACACTCTTCTTTTTAATTGCTCAATCGTGCTGATCAAC
TTTGGGTGATTAAACTTGTTTGTCCTATTGAAAAGTCTGTTAGCAAGATT
TCGACCCCAAAAACACGAAGAGCACTTGACGAAAGGTATGCTTCTTAGAC
ATTGCGATAGGGATATCCTTCTTAAGGCATTTAAAATCATCAGCGCATTT
GACACCACTAAATTTTTTGATACATTACAAACAGACCAGGCTCTGAGGAA
GGTGTGGTCGATAGAAGTAGAggaagagaaatttttgatgaccAGCGGTA
AAAATATCACTGAATGTTGGTGCCTGTTGAAGTTActtcaaattttccaa
ttccTTAGTACCAAAATGGCGACTTTTCATGAATAAGTCTTGTCCATATA
TCAACCATCTTAATCCAAAACATAAGAACCATCTTATTTCAAAcataatt
gaaaacaaataaaaacttgAACTGCATTGGTGAATATTTCATGGAGAATG
CATTGATCACAATGGTTGATAACTGAAATTAAGGACACAAAAATTGGCAT
GGATTCAATCCCTTTTGACAGTATAATGAAATAAGAGTCAAGATACTAAC
AGTAGAAAAATTTCAAGACTGGTTTATTCAATATCATTTTCTTCCTAAAA
AGAAACTAAAATCTTTCGAATTTGAGCACAACacattatttaaaaaacgt
TAAGAAATATCAATTTAGTAGAAAACCTGGTTATTTGCTTCCATAACTCA
TTGACCAATCCATTATTTCATTCtataaaatttgcaattttattGTAACC
AGCCAAATGTGTGATAAAAGCTCAGTTCTGCATTGAATTTCTTTGTTTGA
GCTTCAATAATCATTTATAACCTTCTGCTAACTCCTAATGAAACACTGGA
TGGGAAGATATCAAACctatccaaaatttttagatcCAAGGTGTCTTCAA
TCAGAATTTTGAAGATCAACAAAGCAACTGGAGGATGTTGAGCATACATA
ATAATGGTTTTCACAGCTTTGTTACATCGGCCACTTTGATAACCTCTTTG
AGACTTGTCTACATAAAGCAGCTCTATTAGAGATACTTGGCAAATATATT
CGATTGTACACTTTAATAACCCAGCATCATAAAATTTGTATCGTTTTCTA
ATCAAGAATAGATAGAAGCATGACGAGAATACTTTAATATGAATATTCTA
AAATGTCCTACCATTGGCATTTTACTAAGAAATTAACCAGCAAAGAAGAA
ATTGATTGATTTCTTGAATAAATGTACAGTATGTCCCAATTGTGTCCACT
TTTCAGCACGAATTATGGCATTTATAACAAATCGATTTCCAATATTATCA
AATTTAACACATTTAAATTGTAGGCATGATTGTATTTCATGGTGATAGGA
ATCAATTTGCTATGGAGCAACAATTCCCATTCCTAGGGCAAGGAGGTAAT
GCAGGCTTGCTATAAGAAGGCAAAATAGAAAAAGCCTGAGCAAACTTAAC
AAGCATCAAAATGATTTCCCCAGACTAAAAGGTTGGAATATAAAACACAG
AAAGAAATCTTTCCTGGTTTACACATCCAGTCTTGATGATGCCATTGGCt
gtaa
Run BLAST on NCBI

transcript from alignment at scaffold_472:417580..421151-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067700 ID=TCONS_00067700|Name=TCONS_00067700|organism=Clytia hemisphaerica|type=transcript|length=3572bp|location=Sequence derived from alignment at scaffold_472:417580..421151- (Clytia hemisphaerica)
ACCTGATAATTTGCTTTTGAACGGTCTTGACCCCTCTCATTGCATTCTAC
GGAACTTGAAATCTCATTGTAAGACAACCAAATGAGTGGTAAACTGTCAG
CTCTGCAAGTTACATTCTTCATAGCAGCTTTGCATTGACTTTGAACTCCT
TTTTTTAATCCTAATGATACACTGGATGGAAAGTAAACACCACAAAAGGC
CACAAATGATCGACTTTGAGGATTTTGTTCAGCTTTTCTAACTATTCTAG
GACTGATTTCGTCAACATACTGGCAGCGATAGAAATAGTGATTGGTTTAT
TTTCAGGTATTGATAATCTGTGCCTTGTTAATTCAACAAAATGCTTTGGG
AGGTCCTCCTATATGTTTAAAGTCAAATGGTTCACCTCTCTCTTTGAATG
GTTTGAATCTTTAATTACGCGTTCTTTTTCATGAGGGATGTTTTGCAAAC
GAATGGTTGATAGCTTTTGGCTCTGGATCATAAAATTTGATGACGGTTTG
CTGGCTAAGAAACAGACTAGAAGCAAGACATGGAATACAGCCTACTCTTA
TGTGTTTTAGCGGACAGACATAAGCTTCTTAATCGCACAATGTTAAATTT
CGATTTTACAACAAGAATCTGATCAAAAGTAGAAAACAAATTTGAAAATT
AAGAAACTTTTTCTCACGTAACCTTCTTTTGCTGTGCAACGATCACAAAT
GGAGTTTTTCTTTCTTACACTCTTCTTTTTAATTGCTCAATCTTGCTGAT
CAACTTTGGGTGATTAAACTTGTTTGTCCTATTGAAAAGTCTGTTAGCAA
GAATTCGACCCCAAAAGCACCAAAAGGCAGTGAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAAGAAACTATCACCAGGTGA
CGGTGTCGGTTGGATTCACCCTTAAGTCGTAATTCCCAAGTCCCAAAGCG
GTTACTTTTCAGATGGATTCATTGATCAAGCCAAATGACTACTGAAATTT
AGTACAGAACAAAACATGGCATACAGTTAGCCCACCCCAAACCCCTTTCT
ATATTCTCTTGTAAACAAAATTCTTCAAGATCCAATTTTCGATGTCAAAA
AAAAAGAAAAAAAAAAAAGTTGTTGAAAGGTATTTCTCAAGAAGTTGAAA
TAAATAATTGTAAAACCTGATAATTTGCTTTTGAACGGTCTTGACCTCTC
TCATTGCATTCTACGGAACTTGAAATCTCATTGTAAGACAACCAAATGAG
TGGTAAACTGTAAGCTCTGCAAGTTACATTCTTCATAGCAGCTTTGCATT
GACTTTGAACTCCTTTTTTTGATCCTAATGATACACTGGATGGAAAGCAA
ACACCACAAAAGGCCACAAATGATCGACTTTGTTCAAGGATTTTGTTCAG
CTTTTCTAACTATTCTAGGACTGATTTCGTCAACATACTGGCAGCGATAG
AAATAGTGATTGGTTTCTTTTCAGGTATTGATTATCTGTGCCTTGCTAAT
TCAACAAAATGCTTTAGGAGGTCCTCCTAAATGTTTAAAGTCAAATGGGT
CACCTCTCTCTTTGAATGGTTTGAATCTTTACGCGTTCTTTTTCATGAGG
GATGTTTTGCAAACGAATGGTTGATAGCTTTTGGCTCTGGATCATAAAAT
TTGATGACGGTTTGCTGGCTAAGAAACAGACTAGAAGCAAGACATGGAAT
ACAGCCTACTCTTATGTGTTTTAACGGACAGTCACAAGCTTTTACTCGCA
CAATGTTAAATTTCGATTTTACAACAAGAATCTGATCAAAAGTAGAAAAC
AAATTTGAAAATTAAAGAAACTTTTTCTCACGTAACTTTCTTTTGCTGTG
CAACGATCACAAATGGAGTTTTTCTTTCTTACACTCTTCTTTTTAATTGC
TCAATCGTGCTGATCAACTTTGGGTGATTAAACTTGTTTGTCCTATTGAA
AAGTCTGTTAGCAAGATTTCGACCCCAAAAACACGAAGAGCACTTGACGA
AAGGTATGCTTCTTAGACATTGCGATAGGGATATCCTTCTTAAGGCATTT
AAAATCATCAGCGCATTTGACACCACTAAATTTTTTGATACATTACAAAC
AGACCAGGCTCTGAGGAAGGTGTGGTCGATAGAAGTAGAGGAAGAGAAAT
TTTTGATGACCAGCGGTAAAAATATCACTGAATGTTGGTGCCTGTTGAAG
TTACTTCAAATTTTCCAATTCCTTAGTACCAAAATGGCGACTTTTCATGA
ATAAGTCTTGTCCATATATCAACCATCTTAATCCAAAACATAAGAACCAT
CTTATTTCAAACATAATTGAAAACAAATAAAAACTTGAACTGCATTGGTG
AATATTTCATGGAGAATGCATTGATCACAATGGTTGATAACTGAAATTAA
GGACACAAAAATTGGCATGGATTCAATCCCTTTTGACAGTATAATGAAAT
AAGAGTCAAGATACTAACAGTAGAAAAATTTCAAGACTGGTTTATTCAAT
ATCATTTTCTTCCTAAAAAGAAACTAAAATCTTTCGAATTTGAGCACAAC
ACATTATTTAAAAAACGTTAAGAAATATCAATTTAGTAGAAAACCTGGTT
ATTTGCTTCCATAACTCATTGACCAATCCATTATTTCATTCTATAAAATT
TGCAATTTTATTGTAACCAGCCAAATGTGTGATAAAAGCTCAGTTCTGCA
TTGAATTTCTTTGTTTGAGCTTCAATAATCATTTATAACCTTCTGCTAAC
TCCTAATGAAACACTGGATGGGAAGATATCAAACCTATCCAAAATTTTTA
GATCCAAGGTGTCTTCAATCAGAATTTTGAAGATCAACAAAGCAACTGGA
GGATGTTGAGCATACATAATAATGGTTTTCACAGCTTTGTTACATCGGCC
ACTTTGATAACCTCTTTGAGACTTGTCTACATAAAGCAGCTCTATTAGAG
ATACTTGGCAAATATATTCGATTGTACACTTTAATAACCCAGCATCATAA
AATTTGTATCGTTTTCTAATCAAGAATAGATAGAAGCATGACGAGAATAC
TTTAATATGAATATTCTAAAATGTCCTACCATTGGCATTTTACTAAGAAA
TTAACCAGCAAAGAAGAAATTGATTGATTTCTTGAATAAATGTACAGTAT
GTCCCAATTGTGTCCACTTTTCAGCACGAATTATGGCATTTATAACAAAT
CGATTTCCAATATTATCAAATTTAACACATTTAAATTGTAGGCATGATTG
TATTTCATGGTGATAGGAATCAATTTGCTATGGAGCAACAATTCCCATTC
CTAGGGCAAGGAGGTAATGCAGGCTTGCTATAAGAAGGCAAAATAGAAAA
AGCCTGAGCAAACTTAACAAGCATCAAAATGATTTCCCCAGACTAAAAGG
TTGGAATATAAAACACAGAAAGAAATCTTTCCTGGTTTACACATCCAGTC
TTGATGATGCCATTGGCTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042265XLOC_042265Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067700-exon-scaffold_472-1575043694:420886..421151TCONS_00067700-exon-scaffold_472-1575043694:420886..421151Clytia hemisphaericaexon
TCONS_00067700-exon-scaffold_472-1575043694:417580..419617TCONS_00067700-exon-scaffold_472-1575043694:417580..419617Clytia hemisphaericaexon
TCONS_00067700-exon-scaffold_472-1510915933:420886..421151TCONS_00067700-exon-scaffold_472-1510915933:420886..421151Clytia hemisphaericaexon
TCONS_00067700-exon-scaffold_472-1510915933:417580..419617TCONS_00067700-exon-scaffold_472-1510915933:417580..419617Clytia hemisphaericaexon
TCONS_00067700-exon-scaffold_472-1491911889:420886..421151TCONS_00067700-exon-scaffold_472-1491911889:420886..421151Clytia hemisphaericaexon
TCONS_00067700-exon-scaffold_472-1491911889:417580..419617TCONS_00067700-exon-scaffold_472-1491911889:417580..419617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:417580..421151 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.169663	0	0	0	0	0	0.433615	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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