TCONS_00067680 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067680
Unique NameTCONS_00067680
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length976

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067680 ID=TCONS_00067680|Name=TCONS_00067680|organism=Clytia hemisphaerica|type=transcript|length=976bp
attttggccatcgatgACTTTATATAgtatacagtttgttcttataaaaa
aacgtgtagttagaattacagaaagattcgaataacagaggttcgaatta
gagagagttgactgtattctttcaaaatatttcgaaaaaagtaaaacaat
aaTGAGTGAGATCAAAATTTTGAGCAGCAAGAATGATGTAGATGCATTca
ttcaaaaacaccaaaaatgtaTCATCAAATTTTCGGCCGAGTGGTGTGCA
CCTTGCAGAAGGATGGCAGATTATTATCAGGACGCATCTACGAAATACAA
GGACAAGATAGTATTCGGTATGGTGGATATGACGAACGGTGAAGAGCTGA
ATGCAATCTACAACATTCAATATTACCCAACATTCAAagcgttttcaaaa
caaaaagaatttggtGATGTCTTTGGAGcgaaatttcaaaacttatgTGA
TTTGATCAAAAGTTTAAATGACCTTGAATAAACATGTTTTTCCAATAGTT
TAGATACTTTCTTGCGACGATTGAATTGACAAAACtcgaaaatttgaaga
aagaaaaaccCTCCCCTGAATTAAGGGACCTGTATTTGACCCCTATATTC
ACGTTTTAACAAGCGAGAATTTTTTAACACAAACTGAAGAGCTTTAAAAG
AAGTGTAGGgtgcataatcgatttataaatTAACCCCCAATGCCAACAAA
CAATTATATATTTCTTTTCTGGAAGATCCCGCATAATTACTTTGAATTTA
ATCTGTCAAGAACTTTAACtcaaagaaatattatttttactGTAAATAGA
CAACTAGTAAAAAATCGATGTAAATTTTatgatttcatattttcttttaC
TTATGAATACATCAATTAATACTCAACAAGAATTATTTGCGATAGTGTAC
ATTTTATAAATTAGGGATAACATTTGTTCCCCACCCTGTTGTCTGCCCTG
TTGTCTTTCCAAAATATTGGAAAGGG
Run BLAST on NCBI

protein sequence of TCONS_00067680-protein

>TCONS_00067680-protein ID=TCONS_00067680-protein|Name=TCONS_00067680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MSEIKILSSKNDVDAFIQKHQKCIIKFSAEWCAPCRRMADYYQDASTKYK
DKIVFGMVDMTNGEELNAIYNIQYYPTFKAFSKQKEFGDVFGAKFQNLCD
LIKSLNDLE
Run BLAST on NCBI

transcript from alignment at scaffold_472:75878..78918-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067680 ID=TCONS_00067680|Name=TCONS_00067680|organism=Clytia hemisphaerica|type=transcript|length=3041bp|location=Sequence derived from alignment at scaffold_472:75878..78918- (Clytia hemisphaerica)
ATTTTGGCCATCGATGACTTTATATAGTATACAGTTTGTTCTTATAAAAA
AACGTGTAGTTAGAATTACAGAAAGATTCGAATAACAGAGGTTCGAATTA
GAGAGAGTTGACTGTATTCTTTCAAAATATTTCGAAAAAAGTAAAACAAT
AATGAGTGAGATCAAAATTTTGAGCAGCAAGAATGATGTAGATGCATTCA
TTCAAAAACACCAAAAATGTATCATCAAATTTTCGGCCGAGTGGTGTGCA
CCTTGCAGAAGGATGGCAGATTATTATCAGGTAAGAAAATTTCCAAATAT
CGAAGATTAGGTAATGTAAAATCTAAAAATGCAAAGTTATATACATGTTT
TTTCATAAGCATATAAAAATCCGAAAACAGGCTCAGCGATGCTTAGGTCG
AAAGCTTAATAAGGCTGAAAAAATGCTTGAGGGATGCTTATATCCTAATA
CTTAATACTGCTTATATGCATACTACAAAGTAGCTTATACTTTTTTCATA
GGCTCGAGGTAATGCTTAGAATATGCTTAATTTTTCTCCATATCTGAGCC
TAGATATTCTTACAAGTGCAATGCTTATAAATAAACATGTAATTGAAATA
TATTTGTTCAGAGGGTGCAGTTGTTCAAAGTCGCATATCGACCGCAAAAG
AGTGCGAATAAAACATATGAATAAGGGGGGGGTTTAGTTCCATCAGGTTA
TGCCAGCAACAAGATTTGTTTTGTTATAAAGAAAAATTAATTTTAGGGCT
GCGCGCAAACCAAGGCTCATGGCTTTTCTCTAATTAAGTCTCTGTATTTC
GAATCTTTCTTTAATTCGAAGAATTGCCCCCTTGAAGATCGAATTAGAAG
GAGTCAACTGTTATCTTCTATATTCAAGCAGTGCGATGTGACTGGACCAA
TATACAGTGTGTCCCAAAAAAAGTAAAATCCTCATAATTCATGCCAAATT
TTATAACTTGTTTACTATATATTACAATCTCCAAAGCCTATCCAACCGTC
TTAGGAATGGAATATCTTTTGATTGAATTTCAAAGATAAGCTGCAGAAAA
TCGCTGTAAGTTGGCCCTTGGAGAAAAGGAAAGGTCAACATTTTTGAGAC
CCCTTACAGCGGATTTCTACAGCTAATCTTTGAAAATTTTGACCATAAGA
GGTGGGGATTTTTGGCCTCTCTCAGAGTGTTGTAACCCTCCGATAAAAAC
GTAAAGTTATTAGCACTGACCTTGCATTTCTTAGCGAAAAGAATTCTTAC
ATCGTACAGAAAGAAAAGTCTAACCTATATTTCCATCATAAGCCGATTTC
TACCGACTTCAAAAAGTAAAATGTTTCAAATATTTAAAACTGAAAAATCA
CAAAAAATCTTTAATCGTTAGTCGATAATTATTATTTCAAATTTTAAAGT
GAAGAAAGCTTGAAAATTGTAATTCGTAAGGAATCGGAATATACTCTTTA
TACAATTATCATATCCATACAAGAGGTTGAAAAAAATAATTAAAGGTGTT
GTTTTTAAATAAGAGTGATATCGTTTGCTTACTCATCAATTTCAATTTAC
AAGCTTTTTGACATTGAATTGACACGGATGTGGAGCAAGATTGGTTAGTA
GAAAGAGGAAAAAGAAAAACATTTTTGCTTATATCAGCATAATATAGTAA
TAAGCAGACACCGTTATGAAACATGTGACTGATATTAAACGGGAACACTT
ATGTAAAAATAAAACCTTTAAAGCATGGGCCCCGTGGACGGGGGGGGGGT
CCATGCCAACCATGGTGGGCGACATTTTTTTCCAAAATTTTGGCCCCCTC
ACTCAAAATGGCTCGCCGGGGCCCATGTAAAGGCCATATCAGAGTAAGCT
TCATTCTGCTCCCGAGTTGAAGGAAGAAACTGTTCGAAAGTTAGATAGTC
TACAGTTGATTCTCTCTAATTCGACTTTCAAGAGAATCCTATTCGAATTA
GAAGAAGATACGAATCACAAACAGTACTTTATACCACAGATTTCTCCGAA
GGGCTAGATGTCGTGCTTTAAGCTCTTCCTAGCAAAAAAAAATGAATATC
GCAAAAGATATTGCTGCTATTGTTTTCGAAAAACCTACGAAGCTTCTTAC
TGGTCAAGCGCTGATATTATATTGTAATGTCACGTGACATAGGTAGGATT
TCCTACCTAACCTCAGCACACTGTTCAGCCAAAGCAAAGCACGAAATCTA
GCCATTCGGGCTTTATAAATCTATGCTTTACACTATTCCAGTAGAAGAGA
ACAACGTTTTAGTGTTCGAATTAAAGAAATATTTCGATTAGAGAAAGCTG
ATTGAAAACCGCTAAAAATAAATCCCCTTTTTTTCTCACATTTAGGACGC
ATCTACGAAATACAAGGACAAGATAGTATTCGGTATGGTGGATATGACGA
ACGGTGAAGAGCTGAATGCAATCTACAACATTCAATATTACCCAACATTC
AAAGCGTTTTCAAAACAAAAAGAATTTGGTGATGTCTTTGGAGCGAAATT
TCAAAACTTATGTGATTTGATCAAAAGTTTAAATGACCTTGAATAAACAT
GTTTTTCCAATAGTTTAGATACTTTCTTGCGACGATTGAATTGACAAAAC
TCGAAAATTTGAAGAAAGAAAAACCCTCCCCTGAATTAAGGGACCTGTAT
TTGACCCCTATATTCACGTTTTAACAAGCGAGAATTTTTTAACACAAACT
GAAGAGCTTTAAAAGAAGTGTAGGGTGCATAATCGATTTATAAATTAACC
CCCAATGCCAACAAACAATTATATATTTCTTTTCTGGAAGATCCCGCATA
ATTACTTTGAATTTAATCTGTCAAGAACTTTAACTCAAAGAAATATTATT
TTTACTGTAAATAGACAACTAGTAAAAAATCGATGTAAATTTTATGATTT
CATATTTTCTTTTACTTATGAATACATCAATTAATACTCAACAAGAATTA
TTTGCGATAGTGTACATTTTATAAATTAGGGATAACATTTGTTCCCCACC
CTGTTGTCTGCCCTGTTGTCTTTCCAAAATATTGGAAAGGG

Coding sequence (CDS) from alignment at scaffold_472:75878..78918-

>TCONS_00067680 ID=TCONS_00067680|Name=TCONS_00067680|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_472:75878..78918- (Clytia hemisphaerica)
GACGCATCTACGAAATACAAGGACAAGATAGTATTCGGTATGGTGGATAT
GACGAACGGTGAAGAGCTGAATGCAATCTACAACATTCAATATTACCCAA
CATTCAAAGCGTTTTCAAAACAAAAAGAATTTGGTGATGTCTTTGGAGCG
AAATTTCAAAACTTATGTGATTTGATCAAAAGTTTAAATGACCTTGAATA
AATGAGTGAGATCAAAATTTTGAGCAGCAAGAATGATGTAGATGCATTCA
TTCAAAAACACCAAAAATGTATCATCAAATTTTCGGCCGAGTGGTGTGCA
CCTTGCAGAAGGATGGCAGATTATTATCAGGACGCATCTACGAAATACAA
GGACAAGATAGTATTCGGTATGGTGGATATGACGAACGGTGAAGAGCTGA
ATGCAATCTACAACATTCAATATTACCCAACATTCAAAGCGTTTTCAAAA
CAAAAAGAATTTGGTGATGTCTTTGGAGCGAAATTTCAAAACTTATGTGA
TTTGATCAAAAGTTTAAATGACCTTGAATAAATGAGTGAGATCAAAATTT
TGAGCAGCAAGAATGATGTAGATGCATTCATTCAAAAACACCAAAAATGT
ATCATCAAATTTTCGGCCGAGTGGTGTGCACCTTGCAGAAGGATGGCAGA
TTATTATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042255XLOC_042255Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067680-proteinTCONS_00067680-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067680-exon-scaffold_472-1575043694:78639..78918TCONS_00067680-exon-scaffold_472-1575043694:78639..78918Clytia hemisphaericaexon
TCONS_00067680-exon-scaffold_472-1575043694:75878..76573TCONS_00067680-exon-scaffold_472-1575043694:75878..76573Clytia hemisphaericaexon
TCONS_00067680-exon-scaffold_472-1510915933:78639..78918TCONS_00067680-exon-scaffold_472-1510915933:78639..78918Clytia hemisphaericaexon
TCONS_00067680-exon-scaffold_472-1510915933:75878..76573TCONS_00067680-exon-scaffold_472-1510915933:75878..76573Clytia hemisphaericaexon
TCONS_00067680-exon-scaffold_472-1491911889:78639..78918TCONS_00067680-exon-scaffold_472-1491911889:78639..78918Clytia hemisphaericaexon
TCONS_00067680-exon-scaffold_472-1491911889:75878..76573TCONS_00067680-exon-scaffold_472-1491911889:75878..76573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:75878..78918 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0902122	0.124869	0.0512383	0.374266	0.147875	0.71362	0.835103	2.76746	1.68984	1.31216	1.29384	2.06111	2.14049	0.0525305	0.370295	0.972261	1.022	4.9662	5.24822	3.30944	2.68311	1.00767	2.9435	2.73142	2.52637	1.64905	1.48916	0.513397	1.20306
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR017937Thioredoxin_CS
IPR012336Thioredoxin-like_fold
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top