TCONS_00067672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067672
Unique NameTCONS_00067672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067672 ID=TCONS_00067672|Name=TCONS_00067672|organism=Clytia hemisphaerica|type=transcript|length=2434bp
NCTTTGTCTTTATCATCAGTATGTGTTCTGGAAAATGTGGAAAGCAAGAG
CCAAAGGTTCAACTAATTTTGGTCAGAAGCCAAAGAACGTCAAATGAAGT
TGTCAACATCAAGTCTGGTTTGTTACCGTTATGATTGCTATTTGCATTCA
CAACATCTTGATCGACATGATTCCAACCGCCTTAATAACAATCCAAATGG
TTTAATTACCTACCAACAAACAGCCAATGGCATCATCAAGACTGGATGTG
TAAACCAGGAAAGATTTCTTTCTGTGTTTTATATTCCAACCTTTTAGTCT
GGGGAAATCATTTTGATGCTTGTTAAGTTTGCTCAGGCTTTTTCTATTTT
GCCTTCTTATAGCAAGCCTGCATTACCTCCTTGCCCTAGGAATGGGAATT
GTTGCTCCATAGCAAATTGATTCCTATCACCATGAAATACAATCATGCCT
ACAATTTAAATGTGTTAAATTTGATAATATTGGAAATCGATTTGTTATAA
ATGCCATAATTCGTGCTGAAAAGTGGACACAATTGGGACATACTGTACAT
TTATTCAAGAAATCAATCAATTTCTTCTTTGCTGGTTAATTTCTTAGTAA
AATGCCAATGGTAGGACATTTTAGAATATTCATATTAAAGTATTCTCGTC
ATGCTTCTATCTATTCTTGATTAGAAAACGATACAAATTTTATGATGCTG
GGTTATTAAAGTGTACAATCGAATATATTTGCCAAGTATCTCTAATAGAG
CTGCTTTATGTAGACAAGTCTCAAAGAGGTTATCAAAGTGGCCGATGTAA
CAAAGCTGTGAAAACCATTATTATGTATGCTCAACATCCTCCAGTTGCTT
TGTTGATCTTCAAAATTCTGATTGAAGACACCTTGgatctaaaaattttg
gatagGTTTGATATCTTCCCATCCAGTGTTTCATTAGGAGTTAGCAGAAG
GTTATAAATGATTATTGAAGCTCAAACAAAGAAATTCAATGCAGAACTGA
GCTTTTATCACACATTTGGCTGGTTACaataaaattgcaaattttataGA
ATGAAATAATGGATTGGTCAATGAGTTATGGAAGCAAATAACCAGTTATC
AACCATTGTGATCAATGCATTCTCCATGAAATATTCACCAATGCAGTTca
agtttttatttgttttcaattatgTTTGAAATAAGATGGTTCTTATGTTT
TGGATTAAGATGGTTGATATATGGACAAGACTTATTCATGAAAAGTCGCC
ATTTTGGTACTAAggaattggaaaatttgaagTAACTTCAACAGGCACCA
ACATTCAGTGATATTTTTACCGCTggtcatcaaaaatttctcttccTCTA
CTTCTATCGACCACACCTTCCTCAGAGCCTGGTCTGTTTGTAATGTATCA
AAAAATTTAGTGGTGTCAAATGCGCTGATGATTTTAAATGCCTTAAGAAG
GATATCCCTATCGCAATGTCTAAGAAGCATACCTTTCGTCAAGTGCTCTT
CGTGTTTTTGGGGTCGAAATCTTGCTAACAGACTTTTCAATAGGACAAAC
AAGTTTAATCACCCAAAGTTGATCAGCACGATTGAGCAATTAAAAAGAAG
AGTGTAAGAAAGAAAAACTCCATTTGTGATCGTTGCACAGCAAAAGAAAG
TTACGtgagaaaaagtttctttaattttcaaatttgttttctaCTTTTGA
tcagattcttgttgtaaaatcgaaatttaacaTTGTGCGAGTAAAAGCTT
GTGACTGTCCGTTAAAACACATAAGAGTAGGCTGTATTCCATGTCTTGCT
TCTAGTCTGTTTCTTAGCCAGCAAAccgtcatcaaattttatgatcCAGA
GCCAAAAGCTATCAACCATTCGTTTGCAAAACATCCCTCATGAAAAAGAA
CGCGTAAAGATTCAAACCATTCAAAGAGAGAGGTGACCCATTTGACTTTA
AACatatAGGAGGACCTCCCAAAGCATTTTGTTGAATTAACAAGGCACAG
ATTATCAATACCTGAAAATAAACCAATCACTATTTCTATCGCTGCCAGTA
TGTTGACGAAATCAGTCCTAGAATAGTTAGAAAAGCTGAACAAAATCCTC
AAAGTCGATCATTTGTGGCCTTTTGTGGTGTTTACTTTCCATCCAGTGTA
TCATTAGGATTAAAAAAAGGAGTTCAAAGTCAATGCAAAGCTGCTATGAA
GAATGTAACTTGCAGAGCTGACAGTTTACCACTCATTTGGTTGTCTTACA
ATGAGATTTCAAGTTCCGTAGAATGCAATGAGAGGGGTCAAGACCGTTCA
AAAGCAAATTATCAGGTTTTACAATTATTTATTTCAACTTCTTGGGAAAT
ACCTTTcaacaacttttttctttctttttttttgacatcGAAAATTGGAT
CTTGAAGAATTTTGTTTACGAGAGAATATAGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_472:414888..421268+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067672 ID=TCONS_00067672|Name=TCONS_00067672|organism=Clytia hemisphaerica|type=transcript|length=6381bp|location=Sequence derived from alignment at scaffold_472:414888..421268+ (Clytia hemisphaerica)
NCTTTGTCTTTATCATCAGTATGTGTTCTGGAAAATGTGGAAAGCAAGAG
CCAAAGGGTAAGAATTATACAAAACCGAAATTTATGCTATCTTCTTTAAT
CTTCAAACGAAGAGAAAACCGGCAAAAGAAAGGCATAAATCTTTTTCTTG
ATGCAGTACTCTCTAACTCAATTCATTCTGTTCAAAATGAAGCCAAACTT
TATAAACAGAAAAGACGTCAGGTTATAACAGAGCGCTCTATTAaagagaa
aaactttgaaaacgaaAAAGCAAATGAAGAAGAAATCGAAAGGATTTGTG
GCATTGATAGTTTCTTTAATGAACTTCAGAGTGTGAGATTGGATAAAAAA
AACTACAGTGGTGAAAATAATCTCTCAACAGAAACTTATATACATGACAC
TGATTGTGAAATTAATAACATGGTTTCCAACTTCATCGAAAATGGTTCTC
TAGGCTGAAGTATAGGTGTAGCTTCATTAATCTTGTGAAGAGGGAGAATT
GTTCTCTCATTTTCACCATTAACATCATAAAACAGTAGTTTCAATCTTGC
TGCTTACATCTTTTCACTAAATTGTTGGTGTACTATCAATTTAACTGATA
ACAAGGACGTGGAGAAATTAAATCCTACCAGACATAGGAATATAGGAGAG
AATTAAAAATTGGTGTCCAAGTGATCTCTGGTTTTtgcattttgtttgtt
ttggacaGTTCAAAAAGTTATTCCAGACGAATCAAAAGTCTTCTCAATTT
TAGAATTGACAAGTTACAAGTTGAATGAATTCATATTTCTGGTGTTGGAT
CACCAGATTATTtgcttaatttttatttttgttactaTATTGCCACATAC
CATTGATTGGTACTGTTACTATGCTTGAGGTAACTTACATTATGTCTTCT
ACGGTACATCAAACTCATCTAGTCTGTAAGTTTTAGAATGAACAAGTAAT
GTTGTTACCTTAatagggaactaattttgataAGATTTAGTTCTCAccaa
aataaaagttgattttccaaaataactCCTTAGTTAGTCTACGACTGAAT
TTGTACAATGGAGTGTTTATCTAACCTTCTCAGTACCATGGCTTTGTGGT
CCAGTGGTGTGTAAAACTAACCTTTTATTAAACTGCTCAATTTCAGGCAA
AATCAAATTTACCCTGCCGTTTACTAATTTCAGCAGATTTTGCTGAATTA
GCATCATAAGTTTTatgattcaaaaaacattttgaccaatatttttcagc
ataagcTTTTTGTTTAgttaaaaaacatcatcagtgcATATACAAGTAAA
acgtacaaaaattttctgaaaagccCTTTTCTTCGTCTAAATCATTTTAT
CGCAGAAATGAATGCCAAAATTATAACTTCCCCTCATCACATAATTATTA
TCaatacatttgatattttgaagGTTTTCGCTTTTCACAGAAATAAGCTT
CTTTTAAGGTATCCGCGTGATGTACTTCAAAAGTGACTTTTAAAATCAAG
GGCCAAGGAATGGTTTGATTTGAAGACTATGAAAGTGAACCTCAATTAAT
GAAATAAGCATTATAAATAACACCAATCAAGGAAAGGTATCTTGTTGGCT
TTTTTAATAGGTCGGTCATTGTATTGTTTCTAGTATTTATGAATTGACTC
AAGATTCTTATTCAAActtaaatgttattttctcttgATTAGTTCAACTA
ATTTTGGTCAGAAGCCAAAGAACGTCAAATGAAGTTGTCAACATCAAGTC
TGGTTTGTTACCGTTATGATGtaataattattttaattttaatcattttt
cggacgattttacaaaaactttttttcctaatcAATCTCTAAAGTTTACT
TGTTCATCTATTCTTAACCAATTCATTTCTTTTGAATGTTAGTGCTATTT
GCATTCACAACATCTTGATCGACATGATTCCAACCGCCTTAATAACAATC
CAAATGGTTTAATTACCTACCAACAAACAGGTTTGTATGAATATAATAAT
TCTTTGTTCACTTAGGAACCTTAGCAtggtatacatgttttttttataag
caagtgtctgcccctatatcagactcgcattatgcttagcattatattgt
tctcaaacaatagagccattgtttaggtacctaAAACTGAGCCTGTATAT
GCTTGTagacgttatgcttataaaagaaaaaaacatgtagcatTGCTGCA
AAGTGCATAATTGATCATTAAAGtcctaaataattttttatccCAACATC
AGtttcttttcaaattgaattccaaaaaatgtcaaaagacaacttttaac
atgttTACTGCCATTAAAGAAGCCCTAATGATGTAAACACAATCTCACAG
TAGAGAGAAAATCGTCCACAAAATTAAGTAGTCTCGTTAAATCTTGGATG
AGCTCAATTGCAAAATTTAACCCCGCAAAAATTTATCACTAAAGAGTACT
ACATACCCAaatcaataaatattttaataagaGGTTTATGTTTCTTACAA
AAGGGTTTAGAAAAATGCTATTTACACCAAAACAATGCTATTTATGTTAG
ATTTTAGGATATTTTTTGTGCTAattaaaattgaataactttatGAAGTG
ATTCATTAAATGAGTTATTAATATTTGAATAGTGTCAAGAAAGATTATTA
AGTTTTATGTAAAGAttatttataaatttcatttttttccatttacaGCC
AATGGCATCATCAAGACTGGATGTGTAAACCAGGAAAGATTTCTTTCTGT
GTTTTATATTCCAACCTTTTAGTCTGGGGAAATCATTTTGATGCTTGTTA
AGTTTGCTCAGGCTTTTTCTATTTTGCCTTCTTATAGCAAGCCTGCATTA
CCTCCTTGCCCTAGGAATGGGAATTGTTGCTCCATAGCAAATTGATTCCT
ATCACCATGAAATACAATCATGCCTACAATTTAAATGTGTTAAATTTGAT
AATATTGGAAATCGATTTGTTATAAATGCCATAATTCGTGCTGAAAAGTG
GACACAATTGGGACATACTGTACATTTATTCAAGAAATCAATCAATTTCT
TCTTTGCTGGTTAATTTCTTAGTAAAATGCCAATGGTAGGACATTTTAGA
ATATTCATATTAAAGTATTCTCGTCATGCTTCTATCTATTCTTGATTAGA
AAACGATACAAATTTTATGATGCTGGGTTATTAAAGTGTACAATCGAATA
TATTTGCCAAGTATCTCTAATAGAGCTGCTTTATGTAGACAAGTCTCAAA
GAGGTTATCAAAGTGGCCGATGTAACAAAGCTGTGAAAACCATTATTATG
TATGCTCAACATCCTCCAGTTGCTTTGTTGATCTTCAAAATTCTGATTGA
AGACACCTTGgatctaaaaattttggatagGTTTGATATCTTCCCATCCA
GTGTTTCATTAGGAGTTAGCAGAAGGTTATAAATGATTATTGAAGCTCAA
ACAAAGAAATTCAATGCAGAACTGAGCTTTTATCACACATTTGGCTGGTT
ACaataaaattgcaaattttataGAATGAAATAATGGATTGGTCAATGAG
TTATGGAAGCAAATAACCAGGTTTTCTACTAAATTGATATTTCTTAacgt
tttttaaataatgtGTTGTGCTCAAATTCGAAAGATTTTAGTTTCTTTTT
AGGAAGAAAATGATATTGAATAAACCAGTCTTGAAATTTTTCTACTGTTA
GTATCTTGACTCTTATTTCATTATACTGTCAAAAGGGATTGAATCCATGC
CAATTTTTGTGTCCTTAATTTCAGTTATCAACCATTGTGATCAATGCATT
CTCCATGAAATATTCACCAATGCAGTTcaagtttttatttgttttcaatt
atgTTTGAAATAAGATGGTTCTTATGTTTTGGATTAAGATGGTTGATATA
TGGACAAGACTTATTCATGAAAAGTCGCCATTTTGGTACTAAggaattgg
aaaatttgaagTAACTTCAACAGGCACCAACATTCAGTGATATTTTTACC
GCTggtcatcaaaaatttctcttccTCTACTTCTATCGACCACACCTTCC
TCAGAGCCTGGTCTGTTTGTAATGTATCAAAAAATTTAGTGGTGTCAAAT
GCGCTGATGATTTTAAATGCCTTAAGAAGGATATCCCTATCGCAATGTCT
AAGAAGCATACCTTTCGTCAAGTGCTCTTCGTGTTTTTGGGGTCGAAATC
TTGCTAACAGACTTTTCAATAGGACAAACAAGTTTAATCACCCAAAGTTG
ATCAGCACGATTGAGCAATTAAAAAGAAGAGTGTAAGAAAGAAAAACTCC
ATTTGTGATCGTTGCACAGCAAAAGAAAGTTACGtgagaaaaagtttctt
taattttcaaatttgttttctaCTTTTGAtcagattcttgttgtaaaatc
gaaatttaacaTTGTGCGAGTAAAAGCTTGTGACTGTCCGTTAAAACACA
TAAGAGTAGGCTGTATTCCATGTCTTGCTTCTAGTCTGTTTCTTAGCCAG
CAAAccgtcatcaaattttatgatcCAGAGCCAAAAGCTATCAACCATTC
GTTTGCAAAACATCCCTCATGAAAAAGAACGCGTAAAGATTCAAACCATT
CAAAGAGAGAGGTGACCCATTTGACTTTAAACATTTAGGAGGACCTCCTA
AAGCATTTTGTTGAATTAGCAAGGCACAGATAATCAATACCTGAAAAGAA
ACCAATCACTATTTCTATCGCTGCCAGTATGTTGACGAAATCAGTCCTAG
AATAGTTAGAAAAGCTGAACAAAATCCTTGAACAAAGTCGATCATTTGTG
GCCTTTTGTGGTGTTTGCTTTCCATCCAGTGTATCATTAGGATCAAAAAA
AGGAGTTCAAAGTCAATGCAAAGCTGCTATGAAGAATGTAACTTGCAGAG
CTTACAGTTTACCACTCATTTGGTTGTCTTACAATGAGATTTCAAGTTCC
GTAGAATGCAATGAGAGAGGTCAAGACCGTTCAAAAGCAAATTATCAGGT
TTTACAATTATTTATTTCAACTTCTTGAGAAATACCtttcaacaactttt
ttttttttctttttttttgacatcGAAAATTGGATCTTGAAGAATTTTGT
TTACAAGAGAATATAGAAAGGGGTTTGGGGTGGGCTAACTGTATGCCATG
TTTTGTTCTGTACTAAATTTCAGTAGTCATTTGGCTTGATCAATGAATCC
ATCTGAAAAGTAACCGCTTTGGGACTTGGGAATTACGACTTAAGGGTGAA
TCCAACCGACACCGTCACCTGGTGATAGTTTCTTCACNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACTGCCTTTTGGTGCTT
TTGGGGTCGAATTCTTGCTAACAGACTTTTCAATAGGACAAACAAGTTTA
ATCACCCAAAGTTGATCAGCAAGATTGAGCAATTAAAAAGAAGAGTGTAA
GAAAGAAAAACTCCATTTGTGATCGTTGCACAGCAAAAGAAGGTTACGtg
agaaaaagtttcttaattttcaaatttgttttctaCTTTTGAtcagattc
ttgttgtaaaatcgaaatttaacaTTGTGCGATTAAGAAGCTTATGTCTG
TCCGCTAAAACACATAAGAGTAGGCTGTATTCCATGTCTTGCTTCTAGTC
TGTTTCTTAGCCAGCAAAccgtcatcaaattttatgatcCAGAGCCAAAA
GCTATCAACCATTCGTTTGCAAAACATCCCTCATGAAAAAGAACGCGTAA
TTAAAGATTCAAACCATTCAAAGAGAGAGGTGAACcatttgactttaaac
atatAGGAGGACCTCCCAAAGCATTTTGTTGAATTAACAAGGCACAGATT
ATCAATACCTGAAAATAAACCAATCACTATTTCTATCGCTGCCAGTATGT
TGACGAAATCAGTCCTAGAATAGTTAGAAAAGCTGAACAAAATCCTCAAA
GTCGATCATTTGTGGCCTTTTGTGGTGTTTACTTTCCATCCAGTGTATCA
TTAGGATTAAAAAAAGGAGTTCAAAGTCAATGCAAAGCTGCTATGAAGAA
TGTAACTTGCAGAGCTGACAGTTTACCACTCATTTGGTTGTCTTACAATG
AGATTTCAAGTTCCGTAGAATGCAATGAGAGGGGTCAAGACCGTTCAAAA
GCAAATTATCAGGTTTTACAATTATTTATTTCAACTTCTTGGGAAATACC
TTTcaacaacttttttctttctttttttttgacatcGAAAATTGGATCTT
GAAGAATTTTGTTTACGAGAGAATATAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042253XLOC_042253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067672-exon-scaffold_472-1491911889:414888..414944TCONS_00067672-exon-scaffold_472-1491911889:414888..414944Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1510915933:414888..414944TCONS_00067672-exon-scaffold_472-1510915933:414888..414944Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1575043694:414888..414944TCONS_00067672-exon-scaffold_472-1575043694:414888..414944Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1491911889:416580..416657TCONS_00067672-exon-scaffold_472-1491911889:416580..416657Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1510915933:416580..416657TCONS_00067672-exon-scaffold_472-1510915933:416580..416657Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1575043694:416580..416657TCONS_00067672-exon-scaffold_472-1575043694:416580..416657Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1491911889:416780..416867TCONS_00067672-exon-scaffold_472-1491911889:416780..416867Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1510915933:416780..416867TCONS_00067672-exon-scaffold_472-1510915933:416780..416867Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1575043694:416780..416867TCONS_00067672-exon-scaffold_472-1575043694:416780..416867Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1491911889:417586..418457TCONS_00067672-exon-scaffold_472-1491911889:417586..418457Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1510915933:417586..418457TCONS_00067672-exon-scaffold_472-1510915933:417586..418457Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1575043694:417586..418457TCONS_00067672-exon-scaffold_472-1575043694:417586..418457Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1491911889:418662..419519TCONS_00067672-exon-scaffold_472-1491911889:418662..419519Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1510915933:418662..419519TCONS_00067672-exon-scaffold_472-1510915933:418662..419519Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1575043694:418662..419519TCONS_00067672-exon-scaffold_472-1575043694:418662..419519Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1491911889:420788..421268TCONS_00067672-exon-scaffold_472-1491911889:420788..421268Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1510915933:420788..421268TCONS_00067672-exon-scaffold_472-1510915933:420788..421268Clytia hemisphaericaexon
TCONS_00067672-exon-scaffold_472-1575043694:420788..421268TCONS_00067672-exon-scaffold_472-1575043694:420788..421268Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:414888..421268 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75573	1.78901	0.300109	0.125099	15.8399	10.5515	15.1816	15.0481	13.4192	12.559	17.7841	9.86752	11.7642	11.7706	6.10095	13.6449	6.03418	2.90589	4.04989	6.71551	9.07561	2.38829	5.97165	7.26104	17.203	17.7757	9.19073	5.31084	6.04159	9.32658
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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