TCONS_00067670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067670
Unique NameTCONS_00067670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067670 ID=TCONS_00067670|Name=TCONS_00067670|organism=Clytia hemisphaerica|type=transcript|length=1295bp
GTTAGACAGTATCTGAGAAAAAAGGAATTGATTAATCGAGGAAAATAAGA
AATGAAAGGGAAATTGCACATTTTCTTAATTGTAGGTGTTGTCTTACTCC
TATCTTTGGTGATTCTGCATAGCACGAGAAAGGTAGTTGAGAAACCCAGA
GCCTCACCTACAACTGAAAATATCAACAATGAGTTAAAACCTCTTAACAG
AAAGCAACAAAAATACAACAGCAGTAGAGAGTTCCAATCAGATGATTACT
ACGAAGAAAACTGGAATGGAGATTGTCCTTATCCACGTTATTTTAATAAT
AACAGAGTGAAAAAAGAGAAATGGTACCCAAGATTTTTACATCATGTACA
AAACGTTAATTTGACAGGTGTAGTCAGGGGTAGATGGTTTAACAAATGTT
TGAGATGGTGGCATGCGAACGCTAGAAACACTTATACGGATTATCCCCAC
CGAAGGTTGAAGTGGAGACCAGCTATTAAACCAGGTCCTGATTTCATACG
TCCGAATTGCACTTTCGGACAAGAGCGCAAAAAATCAACCAGATGTTCGA
AAATCCACCAGCAGTTATGGCAACAGTTGGATAGAATGGGAGCCATCTAT
TTCCCTAGAAGTGGAACAGAGCTTGGTGTGTTAAGAGAGAGTACTTGTCT
ATCATCAGATGGAGACGTAGATATGTACGTTGATATCCCACAAGGAATAC
TTTACGCCGAGTTACGTAAAGTTTTTAAAGGTATTTCAATGTGGCAAACA
CCAGATGTCANTCAAGGAATACTTTACGACGAGTTACGTAAAGTTTTTAA
AGGCATTTCAATGTGGCAAACACCAGATGTCATATATGCTGAAGTCCATT
GGACAGTGAAAGGATGTCCACAAGTTCATATGGTTTTCAATGAATGGATT
GCAGACGAGATGATGACAGATGAAGGTGCAAGACCAACAATGAGGGACAT
GTGCTCTTGTTATATGGACTCGGCGAAACTTGCTTGCCATAAAGATGCTA
AAGAACGTATGTATGCTCAGTACGGACCTTCATGGATTGTTCCATTGCAC
GTCAAATACTTAGATGCTCCAAATAGCGCACATGTGTGTAAGAAACTTAg
agacaaattaaaaaatttgacaTCCCCTGATGGACTTATTAGAGAAAACG
CAATTAGGGCATTGGACCCCAGTATTGAATATACTGAAGTGGATATGGAA
ATGATTCTTGCTCAACTGAACATGCTGCACCAATCAATAATAACTAGCAT
AAAAACTCTTCAAAATATCCCTCCTCCACGACGAGACATTTCCAG
Run BLAST on NCBI

protein sequence of TCONS_00067670-protein

>TCONS_00067670-protein ID=TCONS_00067670-protein|Name=TCONS_00067670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MKGKLHIFLIVGVVLLLSLVILHSTRKVVEKPRASPTTENINNELKPLNR
KQQKYNSSREFQSDDYYEENWNGDCPYPRYFNNNRVKKEKWYPRFLHHVQ
NVNLTGVVRGRWFNKCLRWWHANARNTYTDYPHRRLKWRPAIKPGPDFIR
PNCTFGQERKKSTRCSKIHQQLWQQLDRMGAIYFPRSGTELGVLRESTCL
SSDGDVDMYVDIPQGILYAELRKVFKGISMWQTPDVXQGILYDELRKVFK
GISMWQTPDVIYAEVHWTVKGCPQVHMVFNEWIADEMMTDEGARPTMRDM
CSCYMDSAKLACHKDAKERMYAQYGPSWIVPLHVKYLDAPNSAHVCKKLR
DKLKNLTSPDGLIRENAIRALDPSIEYTEVDMEMILAQLNMLHQSIITSI
KTLQNIPPPRRDIS
Run BLAST on NCBI

transcript from alignment at scaffold_472:371750..373776+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067670 ID=TCONS_00067670|Name=TCONS_00067670|organism=Clytia hemisphaerica|type=transcript|length=2027bp|location=Sequence derived from alignment at scaffold_472:371750..373776+ (Clytia hemisphaerica)
GTTAGACAGTATCTGAGAAAAAAGGAATTGATTAATCGAGGAAAATAAGA
AATGAAAGGGAAATTGCACATTTTCTTAATTGTAGGTGTTGTCTTACTCC
TATCTTTGGTGATTCTGCATAGCACGAGAAAGGTAGTTGAGAAACCCAGA
GCCTCACCTACAACTGAAAATATCAACAATGAGTTAAAACCTCTTAACAG
AAAGCAACAAAAATACAACAGCAGTAGAGAGTTCCAATCAGATGATTACT
ACGAAGAAAACTGGAATGGAGATTGTCCTTATCCACGTTATTTTAATAAT
AACAGAGTGAAAAAAGAGAAATGGTACCCAAGATTTTTACATCATGTACA
AAACGTTAATTTGACAGGTGTAGTCAGGGGTAGATGGTTTAACAAATGTT
TGAGGTAGGTTCATGACAATTGTATATACCCGAGACTCATAAAATTTTTA
AACCTTTAGCAACTTCCGACCTACTGAGACCAAGCTAAATATCAGTAAAC
TAGGTATTTGCTTTACTAAAAAGATAAAAGTCTAACTTTAATTGTAACTC
TAGAGCTACTAGATCTGAAAAGTCACATCACAgttgaaaatgttttctat
CAAACCACGGAAGAATTGTAGAGGGTTTCACCcacatttatatttttaaa
ggacCCCCTTAAAAGCTCGAACCTCCCTCGTTTTATACGTAATAAGTTCT
ATCTCTCTTATGGGACCAATAATgacaatttcaaattcaaagttaCCATT
GGGTAATCACCAAAGGgttaataataatttaattcTTATATAATCTAACC
AGTCTCAACTTCATTTCAACAACCATATAAAGAAATCCTTTTCCTATCTT
CCTTATCAAAAATAATAAACAGTTAAAACTTAAGtaataataacaacaat
aataataacatatattttaagtggcatgctccgaaaaattcaaaagcttt
tagaCAGCTCAGGAATAGTTTCAATGAAGGGCCACTAGAAGTAGACTTTG
GATGGTAAAAACCCGATCCTTACACATATATACCCGGCATCTCTCAATAC
ACCTAAGAGTTGGCAAATGCCAAAGTCTCGTACTCCTATAACAAGGCGTG
AAGTCAAGCAAAAGTTTCTTTCTCCTTTTATCATAGATGGTGGCATGCGA
ACGCTAGAAACACTTATACGGATTATCCCCACCGAAGGTTGAAGTGGAGA
CCAGCTATTAAACCAGGTCCTGATTTCATACGTCCGAATTGCACTTTCGG
ACAAGAGCGCAAAAAATCAACCAGATGTTCGAAAATCCACCAGCAGTTAT
GGCAACAGTTGGATAGAATGGGAGCCATCTATTTCCCTAGAAGTGGAACA
GAGCTTGGTGTGTTAAGAGAGAGTACTTGTCTATCATCAGATGGAGACGT
AGATATGTACGTTGATATCCCACAAGGAATACTTTACGCCGAGTTACGTA
AAGTTTTTAAAGGTATTTCAATGTGGCAAACACCAGATGTCANTCAAGGA
ATACTTTACGACGAGTTACGTAAAGTTTTTAAAGGCATTTCAATGTGGCA
AACACCAGATGTCATATATGCTGAAGTCCATTGGACAGTGAAAGGATGTC
CACAAGTTCATATGGTTTTCAATGAATGGATTGCAGACGAGATGATGACA
GATGAAGGTGCAAGACCAACAATGAGGGACATGTGCTCTTGTTATATGGA
CTCGGCGAAACTTGCTTGCCATAAAGATGCTAAAGAACGTATGTATGCTC
AGTACGGACCTTCATGGATTGTTCCATTGCACGTCAAATACTTAGATGCT
CCAAATAGCGCACATGTGTGTAAGAAACTTAgagacaaattaaaaaattt
gacaTCCCCTGATGGACTTATTAGAGAAAACGCAATTAGGGCATTGGACC
CCAGTATTGAATATACTGAAGTGGATATGGAAATGATTCTTGCTCAACTG
AACATGCTGCACCAATCAATAATAACTAGCATAAAAACTCTTCAAAATAT
CCCTCCTCCACGACGAGACATTTCCAG

Coding sequence (CDS) from alignment at scaffold_472:371750..373776+

>TCONS_00067670 ID=TCONS_00067670|Name=TCONS_00067670|organism=Clytia hemisphaerica|type=CDS|length=2484bp|location=Sequence derived from alignment at scaffold_472:371750..373776+ (Clytia hemisphaerica)
ATGAAAGGGAAATTGCACATTTTCTTAATTGTAGGTGTTGTCTTACTCCT
ATCTTTGGTGATTCTGCATAGCACGAGAAAGGTAGTTGAGAAACCCAGAG
CCTCACCTACAACTGAAAATATCAACAATGAGTTAAAACCTCTTAACAGA
AAGCAACAAAAATACAACAGCAGTAGAGAGTTCCAATCAGATGATTACTA
CGAAGAAAACTGGAATGGAGATTGTCCTTATCCACGTTATTTTAATAATA
ACAGAGTGAAAAAAGAGAAATGGTACCCAAGATTTTTACATCATGTACAA
AACGTTAATTTGACAGGTGTAGTCAGGGGTAGATGGTTTAACAAATGTTT
GAGATGGTGGCATGCGAACGCTAGAAACACTTATACGGATTATCCCCACC
GAAGGTTGAAGTGGAGACCAGCTATTAAACCAGGTCCTGATTTCATACGT
CCGAATTGCACTTTCGGACAAGAGCGCAAAAAATCAACCAGATGTTCGAA
AATCCACCAGCAGTTATGGCAACAGTTGGATAGAATGGGAGCCATCTATT
TCCCTAGAAGTGGAACAGAGCTTGGTGTGTTAAGAGAGAGTACTTGTCTA
TCATCAGATGGAGACGTAGATATGTACGTTGATATCCCACAAGGAATACT
TTACGCCGAGTTACGTAAAGTTTTTAAAGGTATTTCAATGTGGCAAACAC
CAGATGTCANTCAAGGAATACTTTACGACGAGTTACGTAAAGTTTTTAAA
GGCATTTCAATGTGGCAAACACCAGATGTCATATATGCTGAAGTCCATTG
GACAGTGAAAGGATGTCCACAAGTTCATATGGTTTTCAATGAATGGATTG
CAGACGAGATGATGACAGATGAAGGTGCAAGACCAACAATGAGGGACATG
TGCTCTTGTTATATGGACTCGGCGAAACTTGCTTGCCATAAAGATGCTAA
AGAACGTATGTATGCTCAGTACGGACCTTCATGGATTGTTCCATTGCACG
TCAAATACTTAGATGCTCCAAATAGCGCACATGTGTGTAAGAAACTTAga
gacaaattaaaaaatttgacaTCCCCTGATGGACTTATTAGAGAAAACGC
AATTAGGGCATTGGACCCCAGTATTGAATATACTGAAGTGGATATGGAAA
TGATTCTTGCTCAACTGAACATGCTGCACCAATCAATAATAACTAGCATA
AAAACTCTTCAAAATATCCCTCCTCCACGACGAGACATTTCCATGAAAGG
GAAATTGCACATTTTCTTAATTGTAGGTGTTGTCTTACTCCTATCTTTGG
TGATTCTGCATAGCACGAGAAAGGTAGTTGAGAAACCCAGAGCCTCACCT
ACAACTGAAAATATCAACAATGAGTTAAAACCTCTTAACAGAAAGCAACA
AAAATACAACAGCAGTAGAGAGTTCCAATCAGATGATTACTACGAAGAAA
ACTGGAATGGAGATTGTCCTTATCCACGTTATTTTAATAATAACAGAGTG
AAAAAAGAGAAATGGTACCCAAGATTTTTACATCATGTACAAAACGTTAA
TTTGACAGGTGTAGTCAGGGGTAGATGGTTTAACAAATGTTTGAGATGGT
GGCATGCGAACGCTAGAAACACTTATACGGATTATCCCCACCGAAGGTTG
AAGTGGAGACCAGCTATTAAACCAGGTCCTGATTTCATACGTCCGAATTG
CACTTTCGGACAAGAGCGCAAAAAATCAACCAGATGTTCGAAAATCCACC
AGCAGTTATGGCAACAGTTGGATAGAATGGGAGCCATCTATTTCCCTAGA
AGTGGAACAGAGCTTGGTGTGTTAAGAGAGAGTACTTGTCTATCATCAGA
TGGAGACGTAGATATGTACGTTGATATCCCACAAGGAATACTTTACGCCG
AGTTACGTAAAGTTTTTAAAGGTATTTCAATGTGGCAAACACCAGATGTC
ANTCAAGGAATACTTTACGACGAGTTACGTAAAGTTTTTAAAGGCATTTC
AATGTGGCAAACACCAGATGTCATATATGCTGAAGTCCATTGGACAGTGA
AAGGATGTCCACAAGTTCATATGGTTTTCAATGAATGGATTGCAGACGAG
ATGATGACAGATGAAGGTGCAAGACCAACAATGAGGGACATGTGCTCTTG
TTATATGGACTCGGCGAAACTTGCTTGCCATAAAGATGCTAAAGAACGTA
TGTATGCTCAGTACGGACCTTCATGGATTGTTCCATTGCACGTCAAATAC
TTAGATGCTCCAAATAGCGCACATGTGTGTAAGAAACTTAgagacaaatt
aaaaaatttgacaTCCCCTGATGGACTTATTAGAGAAAACGCAATTAGGG
CATTGGACCCCAGTATTGAATATACTGAAGTGGATATGGAAATGATTCTT
GCTCAACTGAACATGCTGCACCAATCAATAATAACTAGCATAAAAACTCT
TCAAAATATCCCTCCTCCACGACGAGACATTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042252XLOC_042252Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067670-proteinTCONS_00067670-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067670-exon-scaffold_472-1491911889:371750..372153TCONS_00067670-exon-scaffold_472-1491911889:371750..372153Clytia hemisphaericaexon
TCONS_00067670-exon-scaffold_472-1510915933:371750..372153TCONS_00067670-exon-scaffold_472-1510915933:371750..372153Clytia hemisphaericaexon
TCONS_00067670-exon-scaffold_472-1575043694:371750..372153TCONS_00067670-exon-scaffold_472-1575043694:371750..372153Clytia hemisphaericaexon
TCONS_00067670-exon-scaffold_472-1491911889:372886..373776TCONS_00067670-exon-scaffold_472-1491911889:372886..373776Clytia hemisphaericaexon
TCONS_00067670-exon-scaffold_472-1510915933:372886..373776TCONS_00067670-exon-scaffold_472-1510915933:372886..373776Clytia hemisphaericaexon
TCONS_00067670-exon-scaffold_472-1575043694:372886..373776TCONS_00067670-exon-scaffold_472-1575043694:372886..373776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:371750..373776 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0825951	0.0429082	0.147955	0.146225	0.08811	0.0560679	0.472375	0.594678	0.529977	0.226699	0.0465557	0.142132	1.40581	1.56126	0.932134	1.59878	1.02858	0.628134	1.53769	0.423259	1.23079	0.88332	0.779302	0.943784	0.50416	1.19178	0.34069	0.137348	0.104173	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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