TCONS_00067667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067667
Unique NameTCONS_00067667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length935

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067667 ID=TCONS_00067667|Name=TCONS_00067667|organism=Clytia hemisphaerica|type=transcript|length=935bp
gttttaagcttataaatgttcttaacattttcttatttacgcctttttct
aagaaattgggtgttttagagtccacgaagccttaaaattttcttaactt
gttctaacattttggctatcgaagccttgtgttcttatatagtttgttct
tataaaaaaacgtgtataaatcTTCTCTAGATACATAGTATAACATTACG
TTATGATAGAGAATTGTAAATATATGAATTTTTAATAGTAACACACCACA
TTCAATCAAAGAAAAAGCTGAATAAACCATATACATTTTGCATTCAATGC
TTGGATTTGATTCGTAGattttgttatgttttaatACTAAATGAAAcata
aatttattcaaaacatAACTGTCTCACAAAAAAATATAGTACAAGCGTTG
GGGTTTAGTAGAAATTTATCCAATTTTCTAAAGGgagtatttttagacgt
ttgaAGAAGTAGAAAAGCCACATCGAAAAGAATGTCAAAAGATATATGTG
TTGATATCGAATACTGccGTGGATGAGGTTACGGTAGCCGATTTTACGAA
CTCTCCAAGATGATTGGACGAGAAGGTATTCCATCGGAAAATATCACTGG
AAGAACTGGACGAACGAGTTCATTTGAAGTAAAAATCAACGATAAAGtca
ttttctcaaaacttgACACAGGAAGTTTCCCTGATATGCATGCTGTCATC
AAAGAAATTCGTTCGGTgatgaatggaaacgaggctcaTCGCATCACGGA
AGAAGAGGCGTCTTGTGTTCTATTGTGAACCCTCTATCGAAAGTTTATTA
TTCTTGAAAACTCAATATACGTATGAAGGACAAGTCAGCAAAATACACGA
TGCTGTCTGTTTGGATGCTATTTAAAACTAGCTGTATTTTATGAATTGAA
GAAGTAACATGTGTGTGTTGTGAATACAAAATATA
Run BLAST on NCBI

transcript from alignment at scaffold_472:356801..361033+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067667 ID=TCONS_00067667|Name=TCONS_00067667|organism=Clytia hemisphaerica|type=transcript|length=4233bp|location=Sequence derived from alignment at scaffold_472:356801..361033+ (Clytia hemisphaerica)
gttttaagcttataaatgttcttaacattttcttatttacgcctttttct
aagaaattgggtgttttagagtccacgaagccttaaaattttcttaactt
gttctaacattttggctatcgaagccttgtgttcttatatagtttgttct
tataaaaaaacgtgtataaatcTTCTCTAGATACATAGTATAACATTACG
TTATGATAGAGAATTGTAAATATATGAATTTTTAATAGTAACACACCACA
TTCAATCAAAGAAAAAGCTGAATAAACCATATACATTTTGCATTCAATGC
TTGGATTTGATTCGTAGattttgttatgttttaatACTAAATGAAAcata
aatttattcaaaacatAACTGTCTCACAAAAAAATATAGTACAAGCGTTG
GGGTTTAGTAGAAATTTATCCAATTTTCTAAAGGgagtatttttagacgt
ttgaAGAAGTAGAAAAGCCACATCGAAAAGAATGTCAAAAGATATATGTG
TTGATATCGAATACTGGTAAGACGATCAATCCCTATGAATTTCCCTAATC
TTTTACATAACTCTTAGGCGGCACACATCCCCAGAATcgattttgatata
ggggatgatGCGCATCATGTATAAAATTCTTGTCCTAGAGTCACCCCAAT
TTTGAggtaacctgtttcaattttcttaaaaagcttCCGAAGTCCAATGG
TTGTATTAACctctagccattcaaatttataattaagatttaatgaaatt
taaagatctctcatataaaacttactacagtatatggcccccaataTGTA
GGTTTTAATTCAAATGAGGATTCTGATCTGTAGATTAGtcaaaatgaaat
gatttttgattattttggtaGGTTAGTATTTCTTCTTtaagaaaaacatg
ttttgGTGGTCTAAAACATATTTGGAGTAGCTAATTTACttctaaatgaa
aaaatgttgcaTCAAAATCTGCCAAAACTGCATATAACTCTTTGTAGCTC
TTTAGATACTGAAATTAAGTTATGAAGATGGAGTATAGGATGctttctac
acctaataccTATCCAAAAATCCAGATGTTTTTAAATCTTGAGAAGTTAA
ATGAAAGATATGACATCTTTAAGTCAACCAACATTTCGGGGGCCCTTGAA
TTAGCATAAATAGAATTGAAAATTCTAAAGATGGGTAATAGCTAAAACCT
GTGGAATTCTTTTGCTACCAACTTAACTTCATAGTTTGCAACAGAAAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTATCGTTTCCGTGGAAAATATAaga
gaaaaataactttaaagccTCATATCTTTGGATTGAGCCAAGTTTTAATT
CTGAATTTTTTACAGCGTAATCCATACCCAAACAGGattatttccaaaag
aaaatggttttcaaaaattcaatcaaaacgtcatttcatttaaacagtca
ttttcaaaatttcaaaattttcgatttgGACTTTGCATTATCGAAAATCC
AGAAATCCCTTATCGAAATTACCAAATTTTACATCAGTTAGTTGGAAAAT
TTATAGGAGAACAAGCACATACCAATGGTTTTTCACTCTAACATCACTGG
ACGATACAGTTTGATTTTAGGTAGACCTACATTTTGGGGGCCACAAACCT
ACATTTTAACGACCAAGGGATACTGTGAACATTTTGTCTAGCAAATTTAT
ACTCATCATCTTTCAAATTATACTTCCAGACTATGGTCAAAAATTTATAC
TTGTACCTCAAATATCTggagaaattgcaaaaattccTGATCTACATTTT
GGGGGCCATAGCTCTTCAAGCGACAGAAAAATATTGTTCAAGTTGAAACT
TTGGGAAAAGAACTTTTGGGAAAAACAGTAGAGATGCTGAAGttttaaaa
tcagaaaaagttttgtaaaatatcttttcctGCGGATTTGAGAGAGCTTT
CAAATTCAACCTACAtattgggggccatatactgtaatcaagctaatcaa
gtttctaaaactcaaaaacacaaaaaaaggaGGAACCCCCGGTTGGACCC
CCGCcatactggaaaatttggccgaaatttcgtccccggtggaaagaATA
CTTAACAATTTTAGCCCCACTTAGAAGATGGccctatttgaaattcaatg
taaaaaattgcactccaaaactatctcaaatggattttttgaaatttcta
ataTCTAAAATTTAATAATGTTTCTTCCccgctgtgggaaaaagttctac
ctgggcactgagacaggggtgtttcttGCGCTAACGTAGATATATTCACA
TAAAATTAATTAAATCTTAATACCCAAacaactctctctaatttttctaa
aagttcAATAGACTTCAGACGCCAACAGACGTCCGAAAATTTTGACTGCT
ATTTTTGTCGTACTCGTTAATTCAAAACTTCTTATTCGCCTTTTGATCTT
TGCCGTCTTCTACATCTCATCAGTCTTTCATATAGTAATTCTAATAATTG
AAAGAACAAGGTCTTCTatgatatttccaaaattttagccGTGGATGAGG
TTACGGTAGCCGATTTTACGAACTCTCCAAGATGATTGGACGAGAAGGTA
TTCCATCGGAAAATATCACTGGAAGAACTGGACGAACGAGTATGTataca
atcaaaattttttttactgatCACTGTTGCACTATCTAATCTTTTATCTT
GAAATTAGGTCATCAAGAAATCAGCCCAACTTGATAATTCGAAAACGAAT
TCAACCtgttaagggctacatacactacacaatataatGTCAGGCAACAT
ATTGATAGAATATTgcttaatgtcagaaatatattgtcagcccgatttgc
aatattccaacaatataggggaattgtttacaagtaggtaattttttttt
ataatagagcaccTGCTGTTTACTctgtacattacggtccgaaatCTATA
TTGTAGAATATTGctcaccaatatattgtgtagtctaagtagccctttag
CCTTGTTTGAAAATGACTACCGTGTTGTTAGTTTATAGAGATGTGGTAAA
TGGAATCAGTGGTATGGACTTAACAGTTTATTTTATAATCTCTCCAGGTT
CATTTGAAGTAAAAATCAACGATAAAGtcattttctcaaaacttgACACA
GGAAGTTTCCCTGATATGCATGCTGTAAGTATTGTGaacaattttgaaac
ttttcatttcTCATTCATTACCTCGCACTCAATAAATTATCGAAAGACTG
ATATAATATCCGGCTCCTGATCATACTCAAACGAAAAGAAGTTTCTGAAA
AGAAGTGAAGAGTTTGAGTGAAGTTTTAGGAAGATGGTGCTATGCAATGT
GCTTCATCCCATCAACCCCAAAACTTTATTTGTGTCGCCATATATTATGG
TAGCTTTTTACATCTTCGTATCCCAAAGCAGTCTAAATGGacttaaaaaa
acaatgaaaaagcaCAAAGGACAACAATAAGCACGAATGacaaaaacaaa
catgaaaAACTCCTCCGcgtatcaaaatataaaaacatgaaTAGCAaggt
taagcacgggtttattttgaccgtaaagtgcgataccgtaggcctgtaca
taagatttcacttgcgTGGTTTGCTTTGacaagttatgtacaggcctacg
gtatcgcactttacggtcaaaataaagccgtgcttaacctcgctaatatc
TTATAACGGAATCTCCAAAACTTCATAATATGTAAGGAGAACGAAGATCT
CATTCATATTTATGTTCACTTTGCAGGTCATCAAAGAAATTCGTTCGGTg
atgaatggaaacgaggctcaTCGCATCACGGAAGAAGAGGCGTCTTGCGT
TCTATTNCGTTCGGTgatgaatggaaacgaggctcaTCGCATCACGGAAG
AAGAGGCGTCTTGTGTTCTATTGTGAACCCTCTATCGAAAGTTTATTATT
CTTGAAAACTCAATATACGTATGAAGGACAAGTCAGCAAAATACACGATG
CTGTCTGTTTGGATGCTATTTAAAACTAGCTGTATTTTATGAATTGAAGA
AGTAACATGTGTGTGTTGTGAATACAAAATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042250XLOC_042250Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067667-exon-scaffold_472-1491911889:356801..357316TCONS_00067667-exon-scaffold_472-1491911889:356801..357316Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1510915933:356801..357316TCONS_00067667-exon-scaffold_472-1510915933:356801..357316Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1575043694:356801..357316TCONS_00067667-exon-scaffold_472-1575043694:356801..357316Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1491911889:359489..359589TCONS_00067667-exon-scaffold_472-1491911889:359489..359589Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1510915933:359489..359589TCONS_00067667-exon-scaffold_472-1510915933:359489..359589Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1575043694:359489..359589TCONS_00067667-exon-scaffold_472-1575043694:359489..359589Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1491911889:360048..360124TCONS_00067667-exon-scaffold_472-1491911889:360048..360124Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1510915933:360048..360124TCONS_00067667-exon-scaffold_472-1510915933:360048..360124Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1575043694:360048..360124TCONS_00067667-exon-scaffold_472-1575043694:360048..360124Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1491911889:360727..360765TCONS_00067667-exon-scaffold_472-1491911889:360727..360765Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1510915933:360727..360765TCONS_00067667-exon-scaffold_472-1510915933:360727..360765Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1575043694:360727..360765TCONS_00067667-exon-scaffold_472-1575043694:360727..360765Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1491911889:360832..361033TCONS_00067667-exon-scaffold_472-1491911889:360832..361033Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1510915933:360832..361033TCONS_00067667-exon-scaffold_472-1510915933:360832..361033Clytia hemisphaericaexon
TCONS_00067667-exon-scaffold_472-1575043694:360832..361033TCONS_00067667-exon-scaffold_472-1575043694:360832..361033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:356801..361033 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0326984	0	0.11066	0.0569445	0.376071	0.168581	0.519988	1.00085	3.97416	2.2045	2.0554	2.76923	13.9553	13.159	6.65288	8.63985	4.7213	6.77382	10.8874	13.6056	10.1499	9.80343	4.2435	4.05872	3.03562	2.71514	9.57962	6.38739	1.30859	0.99116
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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