TCONS_00067666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067666
Unique NameTCONS_00067666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067666 ID=TCONS_00067666|Name=TCONS_00067666|organism=Clytia hemisphaerica|type=transcript|length=493bp
AACTAGAGGAATAGTTTTTTACAAGGAGAGAGAGTAAACATGGCGAAAGA
TATACGTGTTCATATCGAATATTGtGGCGGATGAGGTTACGGTAGCCGAT
TTTACGAACTCTCCAAGATGATTGGACGAGAGGGTATTCCATCGGAAAAT
ATCACTGGAAGAACTGGACGAACGAGTTCATTTGAAGTAAAAATCAACGA
TAAAGtcattttctcaaaacttgACACAGGAAGTTTCCCTGATATGCATG
CTGTCATCAAAGAAATTCGTTCGGTgatgaatggaaacgaggctcaTCGC
ATCACGGAAGAAGAGGCGTCTTGTGTTCTATTGTGAACCCTCTATCGAAA
GTTTATTATTCTTGAAAACTCAATATACGTATGAAGGACAAGTCAGCAAA
ATACACGATGCTGTCTGTTTGGATGCTATTTAAAACTAGCTGTATTTTAT
GAATTGAAGAAGTAACATGTGTGTGTTGTGAATACAAAATATA
Run BLAST on NCBI

transcript from alignment at scaffold_472:355081..361033+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067666 ID=TCONS_00067666|Name=TCONS_00067666|organism=Clytia hemisphaerica|type=transcript|length=5953bp|location=Sequence derived from alignment at scaffold_472:355081..361033+ (Clytia hemisphaerica)
AACTAGAGGAATAGTTTTTTACAAGGAGAGAGAGTAAACATGGCGAAAGA
TATACGTGTTCATATCGAATATTGGTAAGTTCTTACAGTACTTTCGATTT
AGACAACTTCTCTAAAAAGGGCATAATATGTTTCATTCGTCTTTCAACGG
CACCCAACTTCAGAATTTCTGCTTTCCCTTCATAGAAAGAAATAATTGCT
GTGATTTTCCAAAAGATCCAAAAGCCAAGAAAAGTATAAGGGAATTAGTT
TGCCCAGCGCATACTAGGTTTTATATAAATTGATGGTATGCTATTGGGAC
AAAATTTAGCTCTTAGAAAAGTTGATAATGAAAACACAAAAAGGAAACGT
gcttttattctttttcagtGGCGGATGAGGTTACGGTAGCCGATTTTACG
AACTCTCCAAGATGATTGGACGAGAGGGTATTCCATCGGAAAATATAACT
GGAAGAACTGGTAGATCAAGTAAGTATAAactaaaatcaaaatgttaaaa
aaattattctctCCCCTTGTAAAAAACTATTCCTCTAGTTTTTTCCTGAG
TGTTAAAAATTATCGACGCTCCATAAACCGACTTCCCCCTCTCCCTGGTA
AGGAAGCACAACTTCGTTCTTTAAGTTAAAACTTCTTGGAAAATACTTTT
CTCCgtactttttttgataaaactcGATATTATTTTTACAGTAGACTTTC
CATCTACCTTGTTAACTCGCAGGGGACTTGGAGTAGAAAGAATTCCAGAT
AATTATAAAAGAATTTAGCAACCAAAAATGGGACCAGGGTCTCTGTTCGG
CATTAAAATCGTGAACCTGCATGTGGATGTATGtggagaaaatacaaaaa
atgcaAAAGCTAGTTAGCAGGTTAGGCTCatattgaatttcaatcaaatt
ttgaaatcaattcaTTTTAAATCTTACTTTTTTATAGCTTCCTTCGAAGT
GACAGTGAACGACAAACTCATTTATTCCAAACTGAAAACTGGAAGTTTTC
CTGATATGGAAGCGGTAAGAAAAAGTCTGTTTTTAAAAGTACAATATGAA
ACCTTGAATTGAGCCTTAACTGGTCAATTATCTATAACCCTTCTCCTCGG
TGAAAAATATACTGAAATGATTccgatattcttatttttcatcttcttct
tcaatgAGCACtgaattttccttttcattttgaaaaacttttttttctgg
aaacTTGTCTTTCTTTGGACAATTTTCCTAACCCACAGGAAGATTCTATA
TTTTCTAAATCTGCTTTTGTTTTTCTAGACTGTAGAAGAAATTCGTTCTA
TTATGAATGGAAACAACCCTAAATCAGTGACAAAGAAAGAGCCTTGTTGT
TGTATTCTATAAGCAGAATGCTGAAAATGTTGTTATGAAGTTCAAATCTG
TGCTGAGAAATATTTATGatgggtggtcagtaaaatacatATGTTGGCCA
TCTTGATTTACTTCAAAGATTgtattttttagacaaatttgtaGCTTTAT
ACACTTTTCTTCTTCTAATAGTTTAAGGTACCAAGCAAGCACTGCATGTA
GAAATATTATAATCGTGTGCCCAAATAAAAGATAACTGAGGgatcttttt
aatttcaaagaccataaataaaagttaaagaagCCAAAAACTATTTTTAG
TCAACTTGCaagttatttttataagaacattcaaattttttgaagccttc
ggatgttcttaattttttgagttttaagcttataaatgttcttaacattt
tcttatttacgcctttttctaagaaattgggtgttttagagtccacgaag
ccttaaaattttcttaacttgttctaacattttggctatcgaagccttgt
gttcttatatagtttgttcttataaaaaaacgtgtataaatcTTCTCTAG
ATACATAGTATAACATTACGTTATGATAGAGAATTGTAAATATATGAATT
TTTAATAGTAACACACCACATTCAATCAAAGAAAAAGCTGAATAAACCAT
ATACATTTTGCATTCAATGCTTGGATTTGATTCGTAGattttgttatgtt
ttaatACTAAATGAAAcataaatttattcaaaacatAACTGTCTCACAAA
AAAATATAGTACAAGCGTTGGGGTTTAGTAGAAATTTATCCAATTTTCTA
AAGGgagtatttttagacgtttgaAGAAGTAGAAAAGCCACATCGAAAAG
AATGTCAAAAGATATATGTGTTGATATCGAATACTGGTAAGACGATCAAT
CCCTATGAATTTCCCTAATCTTTTACATAACTCTTAGGCGGCACACATCC
CCAGAATcgattttgatataggggatgatGCGCATCATGTATAAAATTCT
TGTCCTAGAGTCACCCCAATTTTGAggtaacctgtttcaattttcttaaa
aagcttCCGAAGTCCAATGGTTGTATTAACctctagccattcaaatttat
aattaagatttaatgaaatttaaagatctctcatataaaacttactacag
tatatggcccccaataTGTAGGTTTTAATTCAAATGAGGATTCTGATCTG
TAGATTAGtcaaaatgaaatgatttttgattattttggtaGGTTAGTATT
TCTTCTTtaagaaaaacatgttttgGTGGTCTAAAACATATTTGGAGTAG
CTAATTTACttctaaatgaaaaaatgttgcaTCAAAATCTGCCAAAACTG
CATATAACTCTTTGTAGCTCTTTAGATACTGAAATTAAGTTATGAAGATG
GAGTATAGGATGctttctacacctaataccTATCCAAAAATCCAGATGTT
TTTAAATCTTGAGAAGTTAAATGAAAGATATGACATCTTTAAGTCAACCA
ACATTTCGGGGGCCCTTGAATTAGCATAAATAGAATTGAAAATTCTAAAG
ATGGGTAATAGCTAAAACCTGTGGAATTCTTTTGCTACCAACTTAACTTC
ATAGTTTGCAACAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCG
TTTCCGTGGAAAATATAagagaaaaataactttaaagccTCATATCTTTG
GATTGAGCCAAGTTTTAATTCTGAATTTTTTACAGCGTAATCCATACCCA
AACAGGattatttccaaaagaaaatggttttcaaaaattcaatcaaaacg
tcatttcatttaaacagtcattttcaaaatttcaaaattttcgatttgGA
CTTTGCATTATCGAAAATCCAGAAATCCCTTATCGAAATTACCAAATTTT
ACATCAGTTAGTTGGAAAATTTATAGGAGAACAAGCACATACCAATGGTT
TTTCACTCTAACATCACTGGACGATACAGTTTGATTTTAGGTAGACCTAC
ATTTTGGGGGCCACAAACCTACATTTTAACGACCAAGGGATACTGTGAAC
ATTTTGTCTAGCAAATTTATACTCATCATCTTTCAAATTATACTTCCAGA
CTATGGTCAAAAATTTATACTTGTACCTCAAATATCTggagaaattgcaa
aaattccTGATCTACATTTTGGGGGCCATAGCTCTTCAAGCGACAGAAAA
ATATTGTTCAAGTTGAAACTTTGGGAAAAGAACTTTTGGGAAAAACAGTA
GAGATGCTGAAGttttaaaatcagaaaaagttttgtaaaatatcttttcc
tGCGGATTTGAGAGAGCTTTCAAATTCAACCTACAtattgggggccatat
actgtaatcaagctaatcaagtttctaaaactcaaaaacacaaaaaaagg
aGGAACCCCCGGTTGGACCCCCGCcatactggaaaatttggccgaaattt
cgtccccggtggaaagaATACTTAACAATTTTAGCCCCACTTAGAAGATG
Gccctatttgaaattcaatgtaaaaaattgcactccaaaactatctcaaa
tggattttttgaaatttctaataTCTAAAATTTAATAATGTTTCTTCCcc
gctgtgggaaaaagttctacctgggcactgagacaggggtgtttcttGCG
CTAACGTAGATATATTCACATAAAATTAATTAAATCTTAATACCCAAaca
actctctctaatttttctaaaagttcAATAGACTTCAGACGCCAACAGAC
GTCCGAAAATTTTGACTGCTATTTTTGTCGTACTCGTTAATTCAAAACTT
CTTATTCGCCTTTTGATCTTTGCCGTCTTCTACATCTCATCAGTCTTTCA
TATAGTAATTCTAATAATTGAAAGAACAAGGTCTTCTatgatatttccaa
aattttagccGTGGATGAGGTTACGGTAGCCGATTTTACGAACTCTCCAA
GATGATTGGACGAGAAGGTATTCCATCGGAAAATATCACTGGAAGAACTG
GACGAACGAGTATGTatacaatcaaaattttttttactgatCACTGTTGC
ACTATCTAATCTTTTATCTTGAAATTAGGTCATCAAGAAATCAGCCCAAC
TTGATAATTCGAAAACGAATTCAACCtgttaagggctacatacactacac
aatataatGTCAGGCAACATATTGATAGAATATTgcttaatgtcagaaat
atattgtcagcccgatttgcaatattccaacaatataggggaattgttta
caagtaggtaatttttttttataatagagcaccTGCTGTTTACTctgtac
attacggtccgaaatCTATATTGTAGAATATTGctcaccaatatattgtg
tagtctaagtagccctttagCCTTGTTTGAAAATGACTACCGTGTTGTTA
GTTTATAGAGATGTGGTAAATGGAATCAGTGGTATGGACTTAACAGTTTA
TTTTATAATCTCTCCAGGTTCATTTGAAGTAAAAATCAACGATAAAGtca
ttttctcaaaacttgACACAGGAAGTTTCCCTGATATGCATGCTGTAAGT
ATTGTGaacaattttgaaacttttcatttcTCATTCATTACCTCGCACTC
AATAAATTATCGAAAGACTGATATAATATCCGGCTCCTGATCATACTCAA
ACGAAAAGAAGTTTCTGAAAAGAAGTGAAGAGTTTGAGTGAAGTTTTAGG
AAGATGGTGCTATGCAATGTGCTTCATCCCATCAACCCCAAAACTTTATT
TGTGTCGCCATATATTATGGTAGCTTTTTACATCTTCGTATCCCAAAGCA
GTCTAAATGGacttaaaaaaacaatgaaaaagcaCAAAGGACAACAATAA
GCACGAATGacaaaaacaaacatgaaaAACTCCTCCGcgtatcaaaatat
aaaaacatgaaTAGCAaggttaagcacgggtttattttgaccgtaaagtg
cgataccgtaggcctgtacataagatttcacttgcgTGGTTTGCTTTGac
aagttatgtacaggcctacggtatcgcactttacggtcaaaataaagccg
tgcttaacctcgctaatatcTTATAACGGAATCTCCAAAACTTCATAATA
TGTAAGGAGAACGAAGATCTCATTCATATTTATGTTCACTTTGCAGGTCA
TCAAAGAAATTCGTTCGGTgatgaatggaaacgaggctcaTCGCATCACG
GAAGAAGAGGCGTCTTGCGTTCTATTNCGTTCGGTgatgaatggaaacga
ggctcaTCGCATCACGGAAGAAGAGGCGTCTTGTGTTCTATTGTGAACCC
TCTATCGAAAGTTTATTATTCTTGAAAACTCAATATACGTATGAAGGACA
AGTCAGCAAAATACACGATGCTGTCTGTTTGGATGCTATTTAAAACTAGC
TGTATTTTATGAATTGAAGAAGTAACATGTGTGTGTTGTGAATACAAAAT
ATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042250XLOC_042250Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067666-exon-scaffold_472-1491911889:355081..355154TCONS_00067666-exon-scaffold_472-1491911889:355081..355154Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1510915933:355081..355154TCONS_00067666-exon-scaffold_472-1510915933:355081..355154Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1575043694:355081..355154TCONS_00067666-exon-scaffold_472-1575043694:355081..355154Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1491911889:355449..355507TCONS_00067666-exon-scaffold_472-1491911889:355449..355507Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1510915933:355449..355507TCONS_00067666-exon-scaffold_472-1510915933:355449..355507Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1575043694:355449..355507TCONS_00067666-exon-scaffold_472-1575043694:355449..355507Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1491911889:359548..359589TCONS_00067666-exon-scaffold_472-1491911889:359548..359589Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1510915933:359548..359589TCONS_00067666-exon-scaffold_472-1510915933:359548..359589Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1575043694:359548..359589TCONS_00067666-exon-scaffold_472-1575043694:359548..359589Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1491911889:360048..360124TCONS_00067666-exon-scaffold_472-1491911889:360048..360124Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1510915933:360048..360124TCONS_00067666-exon-scaffold_472-1510915933:360048..360124Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1575043694:360048..360124TCONS_00067666-exon-scaffold_472-1575043694:360048..360124Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1491911889:360727..360765TCONS_00067666-exon-scaffold_472-1491911889:360727..360765Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1510915933:360727..360765TCONS_00067666-exon-scaffold_472-1510915933:360727..360765Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1575043694:360727..360765TCONS_00067666-exon-scaffold_472-1575043694:360727..360765Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1491911889:360832..361033TCONS_00067666-exon-scaffold_472-1491911889:360832..361033Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1510915933:360832..361033TCONS_00067666-exon-scaffold_472-1510915933:360832..361033Clytia hemisphaericaexon
TCONS_00067666-exon-scaffold_472-1575043694:360832..361033TCONS_00067666-exon-scaffold_472-1575043694:360832..361033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:355081..361033 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	3.93285	0.490735	0.595432	0	38.6061	43.1044	16.9129	18.4839	8.80091	15.8898	27.7348	29.5645	26.2375	19.1368	8.67166	16.4063	10.9624	15.6372	0	0	0	0
Blast
[Close]
BLAST of TCONS_00067666 vs. Swiss-Prot (Human)
Match: MIEN1 (Migration and invasion enhancer 1 OS=Homo sapiens GN=MIEN1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.705e-16
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:   28 ERVNMAKDIRVHIEYCGG*GYGSRFYELSKMIGREGIPSENITGRTGRTSSFEVKINDKVIFSKLDTGSFPDMHAVIKEIRSVMNGNEAHRITEEEASCVLL 333
            E V     +R+ +EYC   G+ + + EL+  + +E  P   I  R G T +FE++IN +++FSKL+ G FP    +I+ IR   NG    +IT     CV+L
Sbjct:   15 EEVEPGSGVRIVVEYCEPCGFEATYLELASAV-KEQYPGIEIESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNGETLEKITNSRPPCVIL 115
The following BLAST results are available for this feature:
BLAST of TCONS_00067666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIEN14.705e-1635.29Migration and invasion enhancer 1 OS=Homo sapiens ... [more]
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