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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067665 ID=TCONS_00067665|Name=TCONS_00067665|organism=Clytia hemisphaerica|type=transcript|length=744bp
GGGACAAAAAAGTCCCTTGTAAAATTTTACACAGATAATCGAAACGAAAA
TTTCACAACAAAAAACACAACGGTAGAGAGTTTTCCTCAATCAATCATTT
ATAACAAGTGAGCTGAGAGTAGGAGATAAACGAtgttttaaattaaaaag
acgACCTGTTCAGATTACAAGCTATTAGCACTGAAAGAGGATTTGGAAGG
TAGAACTAGAGGAATAGTTTTTTACAAGGAGAGAGAGTAAACATGGCGAA
AGATATACGTGTTCATATCGAATATTGtGGCGGATGAGGTTACGGTAGCC
GATTTTACGAACTCTCCAAGATGATTGGACGAGAGGGTATTCCATCGGAA
AATATAACTGGAAGAACTGGTAGATCAACTTCCTTCGAAGTGACAGTGAA
CGACAAACTCATTTATTCCAAACTGAAAACTGGAAGTTTTCCTGATATGG
AAGCGACTGTAGAAGAAATTCGTTCTATTATGAATGGAAACAACCCTAAA
TCAGTGACAAAGAAAGAGCCTTGTTGTTGTATTCTATAAGCAGAATGCTG
AAAATGTTGTTATGAAGTTCAAATCTGTGCTGAGAAATATTTATGatggg
tggtcagtaaaatacatATGTTGGCCATCTTGATTTACTTCAAAGATTgt
attttttagacaaatttgtaGCTTTATACACTTTTCTTCTTCTAATAGTT
TAAGGTACCAAGCAAGCACTGCATGTAGAAATATTATAATCGTG Run BLAST on NCBI transcript from alignment at scaffold_472:354878..356647+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067665 ID=TCONS_00067665|Name=TCONS_00067665|organism=Clytia hemisphaerica|type=transcript|length=1770bp|location=Sequence derived from alignment at scaffold_472:354878..356647+ (Clytia hemisphaerica)
GGGACAAAAAAGTCCCTTGTAAAATTTTACACAGATAATCGAAACGAAAA
TTTCACAACAAAAAACACAACGGTAGAGAGTTTTCCTCAATCAATCATTT
ATAACAAGTGAGCTGAGAGTAGGAGATAAACGAtgttttaaattaaaaag
acgACCTGTTCAGATTACAAGCTATTAGCACTGAAAGAGGATTTGGAAGG
TAGAACTAGAGGAATAGTTTTTTACAAGGAGAGAGAGTAAACATGGCGAA
AGATATACGTGTTCATATCGAATATTGGTAAGTTCTTACAGTACTTTCGA
TTTAGACAACTTCTCTAAAAAGGGCATAATATGTTTCATTCGTCTTTCAA
CGGCACCCAACTTCAGAATTTCTGCTTTCCCTTCATAGAAAGAAATAATT
GCTGTGATTTTCCAAAAGATCCAAAAGCCAAGAAAAGTATAAGGGAATTA
GTTTGCCCAGCGCATACTAGGTTTTATATAAATTGATGGTATGCTATTGG
GACAAAATTTAGCTCTTAGAAAAGTTGATAATGAAAACACAAAAAGGAAA
CGTgcttttattctttttcagtGGCGGATGAGGTTACGGTAGCCGATTTT
ACGAACTCTCCAAGATGATTGGACGAGAGGGTATTCCATCGGAAAATATA
ACTGGAAGAACTGGTAGATCAAGTAAGTATAAactaaaatcaaaatgtta
aaaaaattattctctCCCCTTGTAAAAAACTATTCCTCTAGTTTTTTCCT
GAGTGTTAAAAATTATCGACGCTCCATAAACCGACTTCCCCCTCTCCCTG
GTAAGGAAGCACAACTTCGTTCTTTAAGTTAAAACTTCTTGGAAAATACT
TTTCTCCgtactttttttgataaaactcGATATTATTTTTACAGTAGACT
TTCCATCTACCTTGTTAACTCGCAGGGGACTTGGAGTAGAAAGAATTCCA
GATAATTATAAAAGAATTTAGCAACCAAAAATGGGACCAGGGTCTCTGTT
CGGCATTAAAATCGTGAACCTGCATGTGGATGTATGtggagaaaatacaa
aaaatgcaAAAGCTAGTTAGCAGGTTAGGCTCatattgaatttcaatcaa
attttgaaatcaattcaTTTTAAATCTTACTTTTTTATAGCTTCCTTCGA
AGTGACAGTGAACGACAAACTCATTTATTCCAAACTGAAAACTGGAAGTT
TTCCTGATATGGAAGCGGTAAGAAAAAGTCTGTTTTTAAAAGTACAATAT
GAAACCTTGAATTGAGCCTTAACTGGTCAATTATCTATAACCCTTCTCCT
CGGTGAAAAATATACTGAAATGATTccgatattcttatttttcatcttct
tcttcaatgAGCACtgaattttccttttcattttgaaaaacttttttttc
tggaaacTTGTCTTTCTTTGGACAATTTTCCTAACCCACAGGAAGATTCT
ATATTTTCTAAATCTGCTTTTGTTTTTCTAGACTGTAGAAGAAATTCGTT
CTATTATGAATGGAAACAACCCTAAATCAGTGACAAAGAAAGAGCCTTGT
TGTTGTATTCTATAAGCAGAATGCTGAAAATGTTGTTATGAAGTTCAAAT
CTGTGCTGAGAAATATTTATGatgggtggtcagtaaaatacatATGTTGG
CCATCTTGATTTACTTCAAAGATTgtattttttagacaaatttgtaGCTT
TATACACTTTTCTTCTTCTAATAGTTTAAGGTACCAAGCAAGCACTGCAT
GTAGAAATATTATAATCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067665-exon-scaffold_472-1491911889:354878..355154 | TCONS_00067665-exon-scaffold_472-1491911889:354878..355154 | Clytia hemisphaerica | exon |
| TCONS_00067665-exon-scaffold_472-1510915933:354878..355154 | TCONS_00067665-exon-scaffold_472-1510915933:354878..355154 | Clytia hemisphaerica | exon |
| TCONS_00067665-exon-scaffold_472-1575043694:354878..355154 | TCONS_00067665-exon-scaffold_472-1575043694:354878..355154 | Clytia hemisphaerica | exon |
| TCONS_00067665-exon-scaffold_472-1491911889:355449..355549 | TCONS_00067665-exon-scaffold_472-1491911889:355449..355549 | Clytia hemisphaerica | exon |
| TCONS_00067665-exon-scaffold_472-1510915933:355449..355549 | TCONS_00067665-exon-scaffold_472-1510915933:355449..355549 | Clytia hemisphaerica | exon |
| TCONS_00067665-exon-scaffold_472-1575043694:355449..355549 | TCONS_00067665-exon-scaffold_472-1575043694:355449..355549 | Clytia hemisphaerica | exon |
| TCONS_00067665-exon-scaffold_472-1491911889:356018..356094 | TCONS_00067665-exon-scaffold_472-1491911889:356018..356094 | Clytia hemisphaerica | exon |
| TCONS_00067665-exon-scaffold_472-1510915933:356018..356094 | TCONS_00067665-exon-scaffold_472-1510915933:356018..356094 | Clytia hemisphaerica | exon |
| TCONS_00067665-exon-scaffold_472-1575043694:356018..356094 | TCONS_00067665-exon-scaffold_472-1575043694:356018..356094 | Clytia hemisphaerica | exon |
| TCONS_00067665-exon-scaffold_472-1491911889:356359..356647 | TCONS_00067665-exon-scaffold_472-1491911889:356359..356647 | Clytia hemisphaerica | exon |
| TCONS_00067665-exon-scaffold_472-1510915933:356359..356647 | TCONS_00067665-exon-scaffold_472-1510915933:356359..356647 | Clytia hemisphaerica | exon |
| TCONS_00067665-exon-scaffold_472-1575043694:356359..356647 | TCONS_00067665-exon-scaffold_472-1575043694:356359..356647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_472 | supercontig | scaffold_472:354878..356647 + |
Blast
The following BLAST results are available for this feature:
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