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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067654 ID=TCONS_00067654|Name=TCONS_00067654|organism=Clytia hemisphaerica|type=transcript|length=6919bpRun BLAST on NCBI transcript from alignment at scaffold_472:222084..255615+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067654 ID=TCONS_00067654|Name=TCONS_00067654|organism=Clytia hemisphaerica|type=transcript|length=33532bp|location=Sequence derived from alignment at scaffold_472:222084..255615+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067654 vs. Swiss-Prot (Human)
Match: LRRK2 (Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens GN=LRRK2 PE=1 SV=2) HSP 1 Score: 256.144 bits (653), Expect = 5.233e-68 Identity = 277/1105 (25.07%), Postives = 500/1105 (45.25%), Query Frame = 2
Query: 1976 KCSGVKTKLGQKCLKVILLSKKYCCDSRNKVNWEQLGLTHLEESYINDIANYHKLSLVDNLISHLPWNLEVLVNLTHLDLSQNKVQEIPVTLLQLPCLRTLNLSCILIESLPQTNKWSPXXXXXXXXXXXXTSL-----PSKIDSKITYLSIANNKFKEFPMVICNMKTLETLDITGNKDIKKLPIQLGYNTNLKEIYWEGLNVRDIPIRVHQSRETLLSHMRSKAFQAEPHYTMKIAVLGQANHGKTTLIRRLLDVSGGNDSLGGEN-DIDVQELVLSGSNFTDPRFHFNVWDFAGKEELYVAHKCFLTEDSLNILVFDVTEVQSGVRDIEPWLVNLASYISKPNVIIIGTKLDRIPKKSFENGFKDYIEGYLKEFI-KTFEPKMRNVNLHIFEVMSLEDREAIKKLRETIYRIAKEMKITPSEKLTLFDHHERSKESVMGREIPKSFTIFEREV--REKHSILWKPLIHHEDFRYIIRNDFIQEQLVHYEIDEAIKDLTRFLKAKGTLVHXXXXXXXXXXXXXXXPSWLYQLLCCAVKI-LHKTSQHGRMTLHSFKNDLK---NEKINFSPLPFKTFLRILYKFQIIIPISADDVLVPSQLYN-QPYPMPKQLEFKDMIIRRYVFLLVIPHGFMERLLSRLVFFMKEMMTEKNLYVDATGSEAVLSNDVTIEKMLVDRSLICWKNGIQLELPNFHFSIRKEAVSGIEILETR--------VLSDPMGYRVLGYIIKHIQTVITEWFSNFADIRNFAACPVCTRDGCQKVNFINIEDAFLKYN-----TKMNDNDAQLSCKGQHLLSRHD-------VEKMFPELFFKDLPKDLLIEKSTLHFTESDVF--AQGAFGEMYHGYHTTSKEKLTPVFIKTFNGSNKETNIRELLNAFFTARHETFFLNELQQNPFIVRLIGISIQTPFLSLVTELASHGTLRDILYNNAGRLPIKRLLLFRIIKQVANALVYMHQRNIVHRNIRSGSILISELDEQNLTIIVKLGDFEATDSLTPDGMKKESGAYDFRDPEILLCKGEHDVSVDIYSFSMMI-------GEMINGRLPFHDFDRSVLKNGQRPSYENTFAALYGLLPLTDLMTKMC 5161
K SG+ + L K LK++ LSK + ++ L E+++ S N ++ +P+ + ++T L LSQNK IP +L LP LR+L++S I+ LP W L L + S+ + + S++ L +++NK KE P I ++ L +LD++ N +++ P ++G + + ++ + L++ + + ++ ++ + +A P+ MK+ ++G GKTTL+++L+ + + IDV++ + + NVWDFAG+EE Y H F+T+ +L + V+D+++ Q+ V ++PWL N+ + S VI++GT LD S E K + KE + K P +R+ + V + E+ +A+ KLR+TI + KI + V+G+ IP + E+ + K+ + P+I + ++R + Q QL E+ A+ FL G L+HF L D YF +P WL +++ + + + +H + + + D++ ++K F + ++L KFQI +PI + +LVPS L + +P E ++IIR Y + P GF RL++RL+ M+ +G E L + + W+ GI L ++S + G E+L+ V S G +LG ++ HI +++ EWF +I D C + + + A +N K+ +D + LL D + ++ P+L DLP+++++ L F ++ F G+FG +Y + + V +K F NK T++R L R E L L +P ++ L+ I+ LV ELAS G+L +L + L R L RI VA+ L Y+H I++R+++ ++L+ L N II K+ D+ G+K G FR PE+ ++ D+YSF +++ G ++ G ++FD ++ G+ P + P+ + + K C
Sbjct: 1118 KISGICSPLRLKELKILNLSKNH--------------ISSLSENFLEACPKVESFSARMNFLAAMPF---LPPSMTILKLSQNKFSCIPEAILNLPHLRSLDMSSNDIQYLPGPAHWKSLNLRELLFSHNQISILDLSEKAYLWSRVEKLHLSHNKLKEIPPEIGCLENLTSLDVSYNLELRSFPNEMGKLSKIWDLPLDELHLNFDFKHIGCKAKDIIRFLQQRLKKAVPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLD----VSDEKQRKACMSKITKELLNKRGFPAIRDYHF----VNATEESDALAKLRKTIINESLNFKI--------------RDQLVVGQLIPDCYVELEKIILSERKNVPIEFPVIDRKRLLQLVREN--QLQLDENELPHAV----HFLNESGVLLHFQDPALQLSDLYFVEPKWLCKIMAQILTVKVEGCPKHPKGIIS--RRDVEKFLSKKRKFPKNYMSQYFKLLEKFQIALPIGEEYLLVPSSLSDHRPVIELPHCENSEIIIRLYE-MPYFPMGFWSRLINRLLEISPYML---------SGRERALRPN-----------RMYWRQGIYL-----NWSPEAYCLVGSEVLDNHPESFLKITVPSCRKGCILLGQVVDHIDSLMEEWFPGLLEI-----------DICGEGETLLKKWALYSFNDGEEHQKILLDDLMKKAEEGDLLVNPDQPRLTIPISQIAPDLILADLPRNIMLNNDELEFEQAPEFLLGDGSFGSVYRAAYEGEE-----VAVKIF---NKHTSLRLL-------RQELVVLCHL-HHPSLISLLAAGIRPRM--LVMELASKGSLDRLLQQDKASL--TRTLQHRIALHVADGLRYLHSAMIIYRDLKPHNVLLFTL-YPNAAIIAKIADYGIAQYCCRMGIKTSEGTPGFRAPEVARGNVIYNQQADVYSFGLLLYDILTTGGRIVEGLKFPNEFDELEIQ-GKLPDPVKEYGC--APWPMVEKLIKQC 2114 The following BLAST results are available for this feature:
BLAST of TCONS_00067654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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