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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067650 ID=TCONS_00067650|Name=TCONS_00067650|organism=Clytia hemisphaerica|type=transcript|length=2139bpRun BLAST on NCBI protein sequence of TCONS_00067650-protein >TCONS_00067650-protein ID=TCONS_00067650-protein|Name=TCONS_00067650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=503bp MEIFGRSGPVLSHARQQKIADQNRRQEMAREETTKRIQQEKILEANMRSERun BLAST on NCBI transcript from alignment at scaffold_472:205203..221382+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067650 ID=TCONS_00067650|Name=TCONS_00067650|organism=Clytia hemisphaerica|type=transcript|length=16180bp|location=Sequence derived from alignment at scaffold_472:205203..221382+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_472:205203..221382+ >TCONS_00067650 ID=TCONS_00067650|Name=TCONS_00067650|organism=Clytia hemisphaerica|type=CDS|length=22680bp|location=Sequence derived from alignment at scaffold_472:205203..221382+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067650 vs. Swiss-Prot (Human)
Match: MNS1 (Meiosis-specific nuclear structural protein 1 OS=Homo sapiens GN=MNS1 PE=1 SV=2) HSP 1 Score: 268.855 bits (686), Expect = 1.057e-80 Identity = 226/476 (47.48%), Postives = 337/476 (70.80%), Query Frame = 1
Query: 250 RQQKIADQNRRQEM---AREETTKRIQQEKILEANMRSEDRVEERRFLKRIQQQKREEEMQEALENARLKKXXXXXXXXXXXXXXXXXNALKLEALKDEKFRQNIQENSLELRELKSKLRAGYMNKERSAQLXXXXXXXXXXXXRDAEISDQMNQEYERAKQMEAVQEKRRWEESVQYXXXXXXXXXXXXDMKQKQYEEFLKEKLMIDEIVRKIYEEDQREIRARLEKQKATREYIDEFMQKREEWKXXXXXXXXXXXXRIMRFAMQQQEREENRMTEKKKKEEQMSAVQQNLADRIAQERTERDEMERVRMELYAEEQEETHRLREKAEAENRIRERLDLQETMRQQLELKEMKRQAXXXXXXXXXXQMLAKFAEDDRIEQMNAQKRRMKQLEHKRAVERLIDERRAQLQRDVXXXXXXXXXXXXXXSYRKXXXXXXXXXXXXXHASKLLGYLPKGVLRDGQDLNMFGDDFKQAY 1668
R QK+ D+N +++ A + +I+ + + N ++RV+ ++FL+ +Q ++ E +M+EA++ A K L E Q +QEE+LA EL LK E+LKDEK RQ ++ENS+ELREL+ KL+A YMNKER+AQ+AEK AI+ + +RDAEI+ M +E++R + E E +R + QY LE+QL+EQE KQ+ YE+ LKEKLMIDEIVRKIYEEDQ E + +LEK A R YI+EF +++ W++ + + M EEN +I+ FA QQ+REE+RM + ++ EE+ +Q L ++ + +R+++E+VR ELY EEQ E ++ + K EAE ++R++ ++++ +Q+ LKE+ QA +EEEE FR+ MLAKFAEDDRIE MNAQK+RMKQLEH+RAVE+LI+ERR Q D +R +EE + +R + + IIEEER +LL+EHA+ LLGYLPKGV + D+++ G++F++ Y
Sbjct: 13 RHQKLVDENYCKKLHVQALKNVNSQIRNQMVQNEN---DNRVQRKQFLRLLQNEQFELDMEEAIQKAEENKRLKELQLKQEEKLAMELAKLKHESLKDEKMRQQVRENSIELRELEKKLKAAYMNKERAAQIAEKDAIKYEQMKRDAEIAKTMMEEHKRIIKEENAAEDKRNKAKAQYYLDLEKQLEEQEKKKQEAYEQLLKEKLMIDEIVRKIYEEDQLEKQQKLEKMNAMRRYIEEFQKEQALWRKKKREEMEEENRKIIEFANMQQQREEDRMAKVQENEEKRLQLQNALTQKLEEMLRQREDLEQVRQELYQEEQAEIYKSKLKEEAEKKLRKQKEMKQDFEEQMALKELVLQAAKEEEENFRKTMLAKFAEDDRIELMNAQKQRMKQLEHRRAVEKLIEERRQQFLADKQRELEEWQLQQRRQGFINAIIEEERLKLLKEHATNLLGYLPKGVFKKEDDIDLLGEEFRKVY 485 The following BLAST results are available for this feature:
BLAST of TCONS_00067650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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