|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067648 ID=TCONS_00067648|Name=TCONS_00067648|organism=Clytia hemisphaerica|type=transcript|length=6359bpRun BLAST on NCBI transcript from alignment at scaffold_472:171167..201057+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067648 ID=TCONS_00067648|Name=TCONS_00067648|organism=Clytia hemisphaerica|type=transcript|length=29891bp|location=Sequence derived from alignment at scaffold_472:171167..201057+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067648 vs. Swiss-Prot (Human)
Match: PTPRD (Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens GN=PTPRD PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 4.236e-28 Identity = 205/879 (23.32%), Postives = 350/879 (39.82%), Query Frame = 3
Query: 18 AIPPPRVTGYEDGTVTFNFKMTGYPKPQISWWRDNSPLWASDDYITIEDDKLILRTLITTDSGMYQARATNDAGSASLSLELVIIPQGATTPPPVTPSLQIPGEPANFLVAGKTDSTISLAWQPPLVTNGAITQYLIQYKLQGGTLQSKFASGTSNS-FTLTGLQPSTTYEVRIQAINANGNGDFTAYSLVTTDDVKPPKAVKNIN-KFATGNELKLTWD--YDRSGSVPD---LYQIDYTNTDNGQQTSTTVAKPIVVLPGLVVGAWYSYVITPLLGQLKGSPSKPMTIQIPSTAPGIPGVVQTITYDVTSPSTILLNWPVPSGALPSSYRVFYENLDSPSSSINSQPTIQP--NFILNGLQPYTQYKIHLISSANAGDSNPSKPIFVRT-KGKVDA-PINLASSLINKGSAKITWDVVPRDQIHGVLQGYKIDYWM---KDSKGNSLKTTNSVTTSVMLPELQPDKHYEVTVKAVLTDKTESPSSAVYSFRTNRDTTKGPDSATDFKMRQDPDQPDFILLTWNEPY--YISGKLKNYMIHYKAQSDNKWTTIP-LPGVF-------------NSYKISDFNPGSTYSGFIVPIDSNGAGLASNNATVVTMSESAKPATPVQLNIKPRADSLYITWQPDSQSKIVVRGYTVQIKNKDGDEIGTAMLNGYSNTALRHY--NDIDPEEDYTVSVVARNNVGXXXXXXXXXXXLQAPVPALLIKDV-TPGL--TSIALEWDDTKVVAKGTKPTSYVVRYLD------PDGRAILPDQITDKPEVELTGLSPFTPYDIYIKRDGDAG-FPLTPSVSSTTLAAVPSAPLNVQSFMV-APYDTWTIVNWDRPSQPNGAILSYTVLFTDN--MDENDQSGMSSLV 2519
+IPP G+V G P P + W L A D +T EDD I R ++ + A T A S +E + P P PG P +V T ++I+L W ++ Y+IQ+K + K G + + +++ GL P + YE R+ A+N G G + L T + P A +++ + + + + W + +G + Y +D T N I + LV YS + G S + + T G+PG + S ++ILL+W P ++Y + Y++ + + TI+P ++ L GL+P + Y L + + G + I RT + K A P +++ + + S ++W P ++ +G++ Y I Y +D K + + S TT +L +L+ Y +TV A TD P S RTN D GP + + + ++W P G+++ Y +HY + + P L V + IS P ++YS + + G G S V T A P P + + ++ I W P + ++GY ++ KD + + T + + H+ DI Y + ARN VG ++ VP +++ + G TS+ L W + + T Y + Y D P + I+P T + LTGL P T YD+ ++ G P +PSV TL P + ++F V A T +++W+ P N A + + +L+ D ++E D L+
Sbjct: 239 SIPPTNHEIMPGGSVNITCVAVGSPMPYVKWM-----LGAED--LTPEDDMPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKALPKP-------PGTP---VVTESTATSITLTWDSG--NPEPVSYYIIQHKPKNSEELYKEIDGVATTRYSVAGLSPYSDYEFRVVAVNNIGRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQV---ITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGE---EQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSKPSAPPQDISCTSPSSTSILVSWQPPPVEKQNGIITEYSIKYTAVDGEDDKPHEILGIPSDTTKYLLEQLEKWTEYRITVTA-HTDVGPGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTS----VKVSWRSPVPNKQHGQIRGYQVHYVRMENGEPKGQPMLKDVMLADAQWEFDDTTEHDMIISGLQPETSYSLTVTAYTTKGDGARSKPKLVSTT--GAVPGKPRLVINHTQMNTALIQWHPPVDTFGPLQGYRLKFGRKDMEPLTTLEFSEKED----HFTATDIHKGASYVFRLSARNKVG-FGEEMVKEISIPEEVPTGFPQNLHSEGTTSTSVQLSWQPPVLAERNGIITKYTLLYRDINIPLLPMEQLIVPADTT----MTLTGLKPDTTYDVKVRAHTSKGPGPYSPSVQFRTL---PVDQVFAKNFHVKAVMKTSVLLSWEIPENYNSA-MPFKILYDDGKMVEEVDGRATQKLI 1072 HSP 2 Score: 100.523 bits (249), Expect = 9.441e-21 Identity = 210/949 (22.13%), Postives = 371/949 (39.09%), Query Frame = 3
Query: 6 PFFTAIPPPRVTGYEDGTVTFNFKMTGYPKPQISWWRDNSPLWASDDYITIEDDK-----LILRTLIT-TDSGMYQARATNDAGSASLSLELVI-----IPQGATTPPPVTPSLQI--PGEPANFLVAGKTDSTISLAWQPPLV------TNGAITQYLIQYKLQGGTLQSKFASGTSNSFTLTGLQPSTTYEVRIQAINANGNGDFTAYSLVTTDDVKPPKAVKNI----------NKFATGNELKLTWDYDRSGSVPDLYQIDYTNTDNGQQTSTTVAKPIVVLPGLVVGAWYSYVITPLLGQLKGSPSKPMTIQIPSTAPGIPGVVQTITYDVTSPSTILLNW----PVPSGAL-----PSSYRVFYENLDSPSSSINSQPTIQPNFILNGLQPYTQYKIHLISSANAGDSNPSKPIFVRTKGKV--DAPINLASSLINKGSAKITWDVVPRDQIHGVLQGYKIDY----------WMKDSKGNSLKTTNSVTTSVMLPELQPDKHYEVTVKAVLTDKTESPSSAVYSFRTNRDTTKGPDSATDFKMRQDPDQPDFILLTWNEPYYISGKLKNYMIHYKAQSDNKWTTIPL-PGVFNSYKISDFNPGSTYSGFIVPIDSNGAGLASNNATVVTMSESAKPATPVQ--LNIKPRADSLYITWQP---DSQSKIVVRGYTVQIKNKDG-DEIGTAMLNGYSNTALRHYNDIDPEEDYTVSVVARNNVGXXXXXXXXXXXLQAPVPALLIKDV---TPGLTSIALEWDDTKVVAKGTKPTSYVVRYL-----DPDGRAILPDQI----------TDKPEVELTGLSPFTPYDIYIKR---DGDAGFPLTPSVSSTTLAAVPSAPLNVQSFMVAPYDTWTIVNWDRPSQPNGAILSYTVLFTDNMDENDQSGMSSLVTKGDILTHNVTGLVANSKYKFFVLATNAAGDGK 2618
P FT P + TG G +F + TG P+P+I W + + ++ + IE D L ++ L T D +Y+ A+N+ G S+S L + IP+G T + P L++ A L A + + W + NG I Q L+S+ GT L Q + + + + + N G T YS V+ + V+ + ++ G + +T GS + D + + + ++ L + A Y+ V LG ++ +T++ PG P V ++ + ++I L W P P P + Y+ +D +++ + + GL PY+ Y+ +++ N G PS+P+ +T + AP ++ + +++ + + W ++ +G +QGY++ Y WMK + +S TT + L P K Y V V A T + P S+ T T P +FK +P+ ILL+W P S + NY + YK + I + PG SY++ P S Y + G G ++ + TM +KP+ P Q P + S+ ++WQP + Q+ I+ Y+++ DG D+ +L S+T ++ +Y ++V A +VG + VP+ + V TS+ + W + + Y V Y+ +P G+ +L D + T + ++ ++GL P T Y + + GD G P + STT AVP P V + ++ W P G + Y + F D +++L T + + Y F + A N G G+
Sbjct: 24 PRFTRTPVDQ-TGVSGGVASFICQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTID-MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQ-----------LRSESIGGTPIRGALQIEQSEESDQGKYECVATNSAG--TRYSAPANLYVRELREVRRVPPRFSIPPTNHEIMPGGSVNITCV--AVGSPMPYVKWMLGAEDLTPEDDMPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQ--ITVKALPKPPGTPVVTES------TATSITLTWDSGNPEPVSYYIIQHKPKNSEELYKEIDGVATT---------RYSVAGLSPYSDYEFRVVAVNNIGRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWK--EPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITT--------IGNLVPQKTYSVKVLA-FTSIGDGPLSSDIQVITQ---TGVPGQPLNFKA--EPESETSILLSWTPPR--SDTIANYELVYKDGEHGEEQRITIEPG--TSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTM--QSKPSAPPQDISCTSPSSTSILVSWQPPPVEKQNGIITE-YSIKYTAVDGEDDKPHEILGIPSDTTKYLLEQLEKWTEYRITVTAHTDVGPGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQHGQIRGYQVHYVRMENGEPKGQPMLKDVMLADAQWEFDDTTEHDMIISGLQPETSYSLTVTAYTTKGD-GARSKPKLVSTT-GAVPGKPRLVINHTQM---NTALIQWHPPVDTFGPLQGYRLKF----GRKDMEPLTTLEFSEKEDHFTATDIHKGASYVFRLSARNKVGFGE 905 The following BLAST results are available for this feature:
BLAST of TCONS_00067648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.