TCONS_00067641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067641
Unique NameTCONS_00067641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1738

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067641 ID=TCONS_00067641|Name=TCONS_00067641|organism=Clytia hemisphaerica|type=transcript|length=1738bp
ATGATGAACTACAGAGTTTCGGCAATTAATTAATAATCGTTTCATAAATC
CcttttttccatgaaattcAAGGAAATTGTCGTTTCGTTGTATGAGAAGT
AGCTAGCAGAGAAAAGCTATCAACATTAATTTAACACACGAAATCTTCTT
CTTATAGCGGCTGGGTTTCCAACAACACTGAAGCAGCAATTATTATTTAT
TAGTTCAATTTGCTGGCTAAAAGGACGCACTTTtttcaagaagaagaaaa
agatgtCTACCAAAGTGAAAGTTTCGTTGTATTACTGTTTTCAGACTTAT
GGACCTCCATTTTATCaagcattttttgattttaagttAGGAGATACCAT
TTCGTGTATACGTAGAGCAGTATATTTATACGCTTTGAGGAGCTCCATTA
ATACATTTGAGGAGCTGATACTTTTGTTCGATGagatttgcccaaaattt
cCACTGGATGACACAACTCGATATTCGACATTACTTtcttcaaacaatga
aaagaatgaaatcaaactttatttttgctTGAGTAGATGCAAGAAAAATC
TAGAATTAGTGGAACGAATGAACTCAAATAACCAACTCAGAGTTTTATGG
AGATTGATCGTTCTCGCTTTTGGGACTAACAAAATGGTTACTTCATTTTA
CACTGATCAAAATATAGCCGAAATTTATGACCATATCGAGTCCATTACAG
GATTACCTACTAAAAACCTGATGCTGATTTCGAAtgagaaagaaattttt
caatatgCAAATCAGTCAGTTTTCAAACAAAATGACACTGAAACTGAAAG
TATCTTAATATATGTTGTCGCCTACttccaagaaaacaaaaaactggAAA
ATATTTGTCTTCAATATGGAATCAAACATCTGAAATCGCTCAAATTGAGA
TTCTTAACAAAAGAAGAAGAGTTGAACCCAAGAGAAATGGGATCAATCAA
AGACATTAAAAATTATGTTCATAAAACACATAATATTCCTCTCCATCAAC
AAAGTATACTTTACCAACATCAAGAGATTGAAAACGATTCGACCAAAATA
TTCGATCTTTTCTCACAAAAAGAACGTTTGGAAGGAGGAGTGATTTGTTT
TAACGTTGTCATTAATAAGAAACCATTCGAAATCGAAACTGCGGTCTACC
ATTTAGGATTTGGAAGTTGTATGATGACGGTCGTACATGTCTCTTATTCA
GACACAATTGCAGAggttaaaatgaaaattcttgaaaatcatTACGGCTG
GAAATTAGAAAATATCCAGAAACAGCTTGACGATAAGAGTTCTGCTGTTT
CATCAACTGGTTGAGAGTCTCCTTCAGATATTTTTCGATTTGGAACTTAT
TCTAAtattcatgaaaatttcaaaaccgTAGAAGAATGCGGAATATCGCC
AAATGTAAAATACGAATTAAGAGAATTTGTCTTGATTAGAATTCGTCAAA
TTCGTTTAAATTCTACAGAGAAAAACATTGTGGAATATACAATTACCAAA
GATTATTATCATCTCCAACTTGACAACGTGTTGAAAGCTTTTCGTAAGCA
GTACAAAGTACATCGTAAGGAGTTGCGTCTTTTACCTGGCCAAGAGGGTG
TTTCTAAAGATCAGTTCTCGAGAACAAGAATCGAAACCAATGTTTTCGTT
ATTGATTACATGGTCATAAAAAGGCCACAGCGAAAATGTGTGATTATGTG
AAATTTGTGAATTGCTAGTTAATAttatttaattcaaa
Run BLAST on NCBI

transcript from alignment at scaffold_472:113265..119354+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067641 ID=TCONS_00067641|Name=TCONS_00067641|organism=Clytia hemisphaerica|type=transcript|length=6090bp|location=Sequence derived from alignment at scaffold_472:113265..119354+ (Clytia hemisphaerica)
ATGATGAACTACAGAGTTTCGGCAATTAATTAATAATCGTTTCATAAATC
CcttttttccatgaaattcAAGGAAATTGTCGTTTCGTTGTATGAGAAGT
AGCTAGCAGAGAAAAGCTATCAACATTAATTTAACACACGAAATCTTCTT
CTTATAGCGGCTGGGTTTCCAACAACACTGAAGCAGCAATTATTATTTAT
TAGTTCAATTTGCTGGCTAAAAGGACGCACTTTtttcaagaagaagaaaa
agatgtCTACCAAAGTGAAAGTTTCGTTGTATTACTGTTTTCAGACTTAT
GGACCTCCATTTTATCaagcattttttgattttaagttAGGAGATACCAT
TTCGTGTATACGTAGAGCAGTATATTTATACGCTTTGAGGAGCTCCATTA
ATACATTTGAGGAGCTGATACTTTTGTTCGATGagatttgcccaaaattt
cCACTGGATGACACAACTCGATATTCGACATTACTTtcttcaaacaatga
aaagaatgaaatcaaactttatttttgctTGAGTAGATGCAAGAAAAATC
TAGAATTAGTGGAACGAATGAACTCAAATAACCAACTCAGAGTTTTATGG
AGATTGATCGTTCTCGCTTTTGGGACTAACAAAATGGTTACTTCATTTTA
CACTGATCAAAATATAGCCGAAATTTATGACCATATCGAGTCCATTACAG
GATTACCTACTAAAAACCTGATGCTGATTTCGAAtgagaaagaaattttt
caatatgCAAATCAGTCAGTTTTCAAACAAAATGACACTGAAACTGAAAG
TATCTTAATATATGTTGTCGCCTACttccaagaaaacaaaaaactggAAA
ATATTTGTCTTCAATATGGAATCAAACATCTGAAATCGCTCAAATTGAGA
TTCTTAACAAAAGAAGAAGAGTTGAACCCAAGAGAAATGGGATCAATCAA
AGACATTAAAAATTATGTTCATAAAACACATAATATTCCTCTCCATCAAC
AAAGTATACTTTACCAACATCAAGAGATTGAAAACGATTCGACCAAAATA
TTCGATCTTTTCTCACAAAAAGAACGTTTGGAAGGAGGAGTGATTTGTTT
TAACGTTGTCATTAATAAGAAACCATTCGAAATCGAAACTGCGGTCTACC
ATTTAGGATTTGGAAGTTGTATGATGACGGTCGTACATGTCTCTTATTCA
GACACAATTGCAGAggttaaaatgaaaattcttgaaaatcatTACGGCTG
GAAATTAGAAAATATCCAGAAACAGCTTGACGATAAGAGTTCTGCTGTTT
CATCAACTGGTTGAGAGTCTCCTTCAGATATTTTTCGATTTGGAACTTAT
TCTAAtattcatgaaaatttcaaaaccgTAGAAGAATGCGGAATATCGCC
AAATGTAAAATACGAATTAAGAGAATTTGTCTTGATTAGAATTCGTCAAA
TTCGTTTAAATTCTACAGAGAAAAACATTGTGGAATATACAATTACCAAA
GATTATTATCATCTCCAACTTGACAACGTGTTGAAAGCTTTTCGTAAGCA
GTACAAAGTACATTGTAAGGAGTTACGTCTTTCACCTGGCCAAGAGGGTG
TTTCTAAAGATCGGTTCTCGAGAACAAGAATCGAAACCAATGTTTTCGTT
ATTGATTACATGGTCATAAAAAGGTCACAGCGAAAATGTGTGATTACGTG
AAATTTGTGAATTGCTAGTTAATATTATTTAATTTAAACTTTCTGAagct
ctttttatttttttgttcgttAGTGGTGAAATATTAGCAGAAAACGAATT
TTAGCAAAATCGATCGTAGCGAATCAAACCTTATTTGTCTATAAGACTTT
AAGAGACTTTATATCTatggaaattttaaaactaaTTCCGTAGAGGGCTA
ACGAATTTTGACACTACAGCCACGAGTTTTCAGTTTGGGAGGGGGTGAGA
TTGGAAAGATTTTGACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctt
tttgacatccactgaattgatagaaaatttgaattgttatttacagtact
gcaaatttttgaatttttttctacacaataaattgaagttgagataagaa
ttgtttgatacttaaagtttcacgcaacttttcgtcacgatcttcagtca
aaaattctatacaaaaaattcgtttcaagtttacaaaaatatactgtgCA
CTGTAGAGTCTTCGTCAAAGCaattgacgtcatttcagtCTTTTCCAGTC
ATTTcagaagaatttttttctaaagataaaggtaccaatctttagacaaa
ttgagtaaggatcggcctgataccacttaatcttcatctggataaataaa
cgctcataaaatgctgttatctgaaaaatatatgtgtgatttgaaatgcg
atatctcacgaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAT
CTCAATttgattttagttttgattgttttgatttatagttttaacttgtt
cttaatattttgtccgtcgaggccttatgttcttatatagtttgttctta
taaaaggacGTGTAACTTAAAAGATTCACGTTTTTGTTAGGATTTAAAAC
AGCACGTCATGTGTTTATAATCAAAATAAAGCCGTTTTATAATTGATGAA
AATTACCTGAGCGGTTTATTTATATTACACcagattacacgcttttttat
aagaatggtgtaaatccatttcatcatggatattcttaacttttttggga
aaatcatcctaaaatattcttacagcattcctAGGTTAGGATcttaattc
agactagatttaacatttagtacatacgtctcaagcataaaatgacattt
ttgtgaaaggcgTGAGCCTTGgtgtaattgacaatttatgaTTAAAAACt
ggcaatttacagttaaaattgttctgtaaatggcatattcttagcttgag
tagcaaaaattccatgatggtgatattcttaccattattcttaatttttt
catcatggacatttttataaagtgtattcttataaaaaaaaagcgtgtac
atcaATGAAAGGAAAGAGAAATCTATTATATCATGAAAACGAAGAGAAAA
TTTAAATAAGAGATAATATGATGTTATGTAGAGAGAACTTATATTATGGT
TCGAATGAGttggtttgatttgaaatgattgcttatcaaaagttacagag
aGCACAACAATCATACGACAAACTAAAGGGATTCAACAAACTAAAGGGGT
TCAATCGGGGATTCAACAAACTAAAGGGGTTCAATTTCAAAAGACATTAA
TTTACTAGGAAACCTCGCAACCAACATGGCCTTTGGTAAAGTGAAGGTGT
CCGTTTATCATGGTTTTCATTTTAATCAAGAgccattttttaactcaaat
aaatttgaattgaatgacaaaatatcATTTGTAATGAGAAAGATTGCAGA
TTTTCTTGTACATGTACCAGTTGATCTGATGCTTATGTTTCAAGGAAACA
ATACTGAAACACCGCTTCGTGGTGATACGAACATTTCAGAACTTACTTTT
GGTTTAAATGAAATCAAACTTTATTTTGGATTGAAAAGATGCAGACAATC
TCTACAGCTTCTCGAACGGAAACAGACAAAAGACTTGAAAATGTTATGGA
GATTAACCGTTAGAGGATTTGGAATATCTAATCAAATAATTACAACAACA
TATACTGATCGCAATATGGCTGAAATTTATGAACATATCGGGTCCATTAC
AGGATTGCCAGCTGATCATTTGATAATGTTCTCTAAAGATAAAGAAGTTT
TCCCATACACTAGAGAGTCCGTTTTCGATGGACAAAAAGATTTTCGTGAA
AGTATGATCATGTTTGTTGTTGCTTATTTTCAAGAAAACGAAAAGATGGA
CGATATATGTATTCAATATGGAATCAAACATCTGAAATCACTCAAGTTGA
AATTCTTAACAAAAGAAGAAGAGTTGAATCCAAGAGAAATGGAATCTATC
CAAGACATTAAAAATTATGTTTATAAAACACATGATATTCCTCTCCATCA
ACAAAGTATACTTTTCCAACATCAAGAGATTGAAAACGATTCGACCAAGA
TATTTGATCTTTTGATGCAAAAAGAACGTTTGGAAGGAGGAGTGATTTGT
TTTAACGTTGTCATTAATAAGAAGCCGTTCGAAATCGAAACTGCGGTCTA
CCATTTAGGATTTGGAAGTTCGATGATGACGGTCGTACATGTCTCTTATT
CAGACACAATTGCAGAggttaaaatgaaaattcttgaaaatcatTACAGC
TGGAAATTAGAAAATATCCAAAATCAACTTGACGATGAGAGTTCTGCTGT
TTCATCAACTGGTTGGGAGTCTccttcagatttttttcaatttggaaCTT
ATTCTaatatttatgaaaatttcaaaaccgTAGAAGAATGCGGAATATCG
CCAAATGTAAAATACGAATTAAGAGAATTTGTCTTGATTAGAATTCGTCA
AATTCGTTTAGATTCTACAGAGAAAAACATTGTGGAATATACAATTACCA
AAGATTATTATCATCTCCAACTTGACGAAGTGTTGAAAGCTTTTCGTAAG
CAATACAAAGTACATCGTAAGGAGTTGCGTCTTTTACCTGGCCAAGAGGG
TGTTTCTAAAGATCAGTTCTCGAGAACAAGAATCGAAACCAATGTTTTCG
TTATTGATTACATGGTCATAAAAAGGCCACAGCGAAAATGTGTGATTATG
TGAAATTTGTGAATTGCTAGTTAATAttatttaattcaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042243XLOC_042243Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067641-exon-scaffold_472-1491911889:113265..114825TCONS_00067641-exon-scaffold_472-1491911889:113265..114825Clytia hemisphaericaexon
TCONS_00067641-exon-scaffold_472-1510915933:113265..114825TCONS_00067641-exon-scaffold_472-1510915933:113265..114825Clytia hemisphaericaexon
TCONS_00067641-exon-scaffold_472-1575043694:113265..114825TCONS_00067641-exon-scaffold_472-1575043694:113265..114825Clytia hemisphaericaexon
TCONS_00067641-exon-scaffold_472-1491911889:119178..119354TCONS_00067641-exon-scaffold_472-1491911889:119178..119354Clytia hemisphaericaexon
TCONS_00067641-exon-scaffold_472-1510915933:119178..119354TCONS_00067641-exon-scaffold_472-1510915933:119178..119354Clytia hemisphaericaexon
TCONS_00067641-exon-scaffold_472-1575043694:119178..119354TCONS_00067641-exon-scaffold_472-1575043694:119178..119354Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:113265..119354 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.762164	0.602956	0.665513	0.266215	1.27529	0.606868	0.478562	1.13679	0.267266	0.850757	0.32878	0.0930242	2.69861	1.49218	1.16013	1.90741	0.546489	1.70241	1.17423	0.794071	0.26921	0.221732	1.5513	1.52359	0.296728	0.31651	8.10156	3.64371	1.97975	1.39549
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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