TCONS_00067638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067638
Unique NameTCONS_00067638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067638 ID=TCONS_00067638|Name=TCONS_00067638|organism=Clytia hemisphaerica|type=transcript|length=4390bp
CACTGAGATTTTGAGAGATTCTGTCTACATGttctttttatgagaacaaa
ctatataaaaagataagacttcgatggccaaaatattaagaacaagtaag
TTAAGAGTATTTTCAGGTTTTGCGTACtctaaaacaccctatttcttaga
aaaatgcttACAAAATGGTAAcaataagaaaatgttaagaaaatctAGGC
TTCAAACTCACACAGTTAaggaacatccgaaggcttcaaaaaattttcac
caCAATGCATTGTGGTGATTCTCAATAAAGcccaatttcatgattttgca
tgatttttgagaatttgatTATCATTTTCAAACCAAATGTCTCATTATAA
AATTAAAGTTGGACTTTCTCCTTCCAAATATAAAATGTTATGGATggttt
caagcaaaaaattttGGGACGTTAGGAATCGTTTAATTATCGTTTAATAA
ATTATTGTTTAAGCTAAAACACGAAATGCATTTTCAGGCTATAAAACACA
CAATGGTGTCACAATGCAACAAGCACaacgcaccgggtacggcaggagCG
GGGGGCGCCGTGCatgattttcacaataaattcCAATATTTTCCTCTTCG
TtggtaaaatcgcttaaatttcctcattcgccgtaccagatttacAAAGC
TTCCGTCGTGTATGCAATACAATGAAAGCAATTGAAAGAaattaccataa
aaaatttggCTATAGAAAAATAAATGGTGCCTCACAGTGCCATACGAAAT
AAACAAGAAATACTGTCCAAAGACTCTTCCCAAAAGCACGTGTACAGAGA
AAATCTTCGACTTCAACTTCATGCAAAATAGGAAGATTTTAAACTCAACA
TGAAGATTTTAACCTtaacacattttttttcttgagacaCTCTGTATTTT
TGACGttgaattacaaaaaaaagGTAATCACAAAATATGACAAGTTTCTT
TCGCTTTTTTCACAACAACATATTCTATAACGCAGACATCACCATCCAGT
TTTTGAATCTTCCAACAATGCACTGGATCTTTAAATACACCAAGTTGACC
GGAGATGAGGTGAAGCTCTTTGTTATGCACTCCATATTCCTCCATAAAGC
TTTTCAAAGTTTCATAGAGGTGTCTATAATAATGATGCTTGGGAATCGAA
TACTCAACTATCATTTCTTTAGAATCTAAACAAATTCTGACCAATATGGT
CTCTAACATAACATATCCAGTTGAATTTGGTAAAATATTACACTCCTCTA
CAGTTTTCTTATCTTGAAAGATGGTATTATCTTTTTTTAGATTGAAAATA
TCCGTAACTATTTTACTTTCTATTCTTAAATGTTTGAAGCTAGTGCTATT
GAGTCGTTTTGTGATATCCTCCAATCCCCACGAGTAATATCTTCTTAGGA
TTTTCATCTCCAATAATATTGTCGGAATCGCAGATCTCGATAAAGTGCGT
TTCAGAATGGTTAGCCCAAAAATGCACAACCACTTcaatattaaatgtct
ttttTTCAATCACAGCATTTAAGTGCATCTCtcctttgaaattttcattt
tgtgagaaaagaTCGAATATTTTGGTCGAATCGTTTTTAATCTCTTGATG
TTGGAAAAGTATACTTTGTTGACGGGGAGGGATGTTATGTGTTTTATGAA
CATAATTTTTAATGTCTTGGATAGATTCTATTTCTCTTGCATTCAACTCT
TCTTCATTTGTTAAGAATCTCAATTTGAGTGATTTCAGATGTTTGATTCC
ATATTCGAGACagatttcatcaattttttcgttttctttgaaGTAGGCaa
caacatgtaacaaaatACTATCCTGAATTATTCCCTTCCCTTTGAAAACA
GATTCACTTGTATATCGaatgatttttttatcatttgatATTAATATTTG
GTAATCTTTTGGGAGTCCTGTAAAAGCCTCAACATATTCATAGATTTCTG
CAGCATTAAAGTTGGTATAAACTGTAGTTATCATCTTATCTGCTCCAAAC
CCTTTAATGTTTAATCTCCATAAAATAGTTATAAGATCTGTAGGGTGCAC
TGCTTTTCTTCGTTCTACAATCTCCAGAGATCTCTTGCATCTTCTCAATC
CAAAATAAAGTTTGATTTTACTTGGCTCAAGATTCAAGTTGGTGTCAGAG
TTATCCGAAGTGGCAAACGTCGAAAGAAGTGTATCGTAATTAAGTGGTTT
TGCAATGTCATCTGTGTCAAATAAAAGTATTAAATCTTTTGGTATATTAA
GATATGTTGCAACTTTGTCACGTACATCTAAAATTGTATCACTCAATACA
AAGACATCAAAAACATCATTTGAACGGAAAGCTGGACGTCTATCGGAACG
AAAACCATGATAAACTAGAATTTGGACTCGTTGTGGCAAGGACATatttt
ttcttgtttaattAACAGATTAAAGAAGTTTTTTGATTCTTGTAGACTAG
CTTGTTGTGTCAATTTTCTCCCAGACCTAACGACAAacgcaattttttat
ttaacatttttgttttcaccaTGATGATTTTGACTTCATTTATACATGTC
ATTATTGACTTGAAATGTTCATAAATAATGACCTTCTTTTCATTGTCATG
GTTATCGAAAGTGATTAGAGCAGCATTTTAATTAAACATAAATATATAAT
TagatccatataacgttaatcATTAGTAGGCTATTTTAAAAATGCTGTTA
CATCACTTTCCGTTGTAAGAATTTCGAAGAAAATGTGAATCTTTAAAATA
TATAGGGGCAATACTATTACTGGAGAGAATTACATAGCACAATATTAGCG
ACTGGTTAACCAACTATTCAACAAAACTCTGAACcatcaaagaaatttta
atcAAGAAGAAACACAACAATGTCTATCAAAGTGAAAGTTTCAATATACC
ACTGTCTACATATTGACCAAGGTCCATTTTTTGAATCGAATGATTTTGAG
TTGAATGATACTATTGCATATGTAAATCAAAAGATTGCATGGAGAGGACT
GGTATATGGTTACCCCATGGCCATGGTACTTTTATTTGATAACGTTAATT
TTACAACACCTCTTCTTGGAGAAACTCGACTTTCAACTCTTGTTACATCA
GAATCTGGAATTGACTCAATTCCAAGGACGAATaaattaaaactttattt
tgGTTTACGAAAATGTAAAGAGTCtatgttgattttgaaaataagaaaaa
cagttttctcGACAGATCATATCACATCCTTATGGAGACTTACTGTTATA
GCTTTTGGAAGTGGCCAGATAATTACGACAACATATACTAATGATCGCAA
TATCGCTGAAATCTATGACTATTTAGAGTCCATTACAGGCTTACCGGCTG
ATAACCTGATATTACTTTTTGATGATaaaacaccttttcaatatacaAAC
GAGTCAGTTTTTCATGAACATGTGTTCCTAGATGTTATCGCTTGTTTCCA
AGAAAACGAAAAACTGGAAAATATTTGTCTCAAATATGGAATCAAACATC
TGAAATCACTTAAGTTGAGATTCTTAACAAAAGAAGAAGAGTTGAACCCA
AGAGAAATGGGATCAATCAAAGACATTAAAAATTATGTTCATAAAACACA
TGATATTCCTCTCCATCAACAAAGTATACTTTTCCAACATCAAGAGATTG
AAAACGATTCGACTAAGATATTTGATCTTTTGTTACAAAATGGAGTTTTG
GATGGAGATTTGTGTTTTCACCTCGTCATTAGGAAAAAGCCATTTGAAAT
TACAGTCATGTTTCATCACCAAGGGCGTACAGGTGTTTCGGACCATTTGG
TAGAGATTTGTGATTCAGACACAATAGGAGAGGCTAAAATGAGAATACTC
CGGCAATATTACCCTTGGAAGATTGAAAACATCCAAAGACAACTTGAGGA
TACAAACTCCGCTGTTTCATCAACTGGTAGAGAATTTCCTTCTgagtttt
ttcaatttcagaagaaaaacaTCACTTATTTGGACTGTCAGACTGTAGAA
GAATGCAGATTCTTACCAGATCATGAATATCAGATGAAAGAAAGCCTGTT
GATTAGAATTCGTTTAGATTCTACTCAATCAGATGTAGGTGTTGTGCACT
ATACGATACCTAAAGATCATCTCTTGctttatcaaactttaaaagatttt
aagagaCAGTATGGAGTTTATCGTTGGGAGCTCCATCTCCTGCCAGATCA
AACGGGCGTGACTAAAAATCCTAAACATTGTTGGATGATTGAATCAATCG
ACGTGGACGTGTTTGTTGTAGATTACGCTGTTATAAAGAGGCGATCATGT
TATATAATGTAAAGTTAAAATTTATACTTTCGATCTCTTCTCGTAAAGGA
AGAGtagaaaaatatgatttttttaggaACTTTTTTGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_472:107194..111583+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067638 ID=TCONS_00067638|Name=TCONS_00067638|organism=Clytia hemisphaerica|type=transcript|length=4390bp|location=Sequence derived from alignment at scaffold_472:107194..111583+ (Clytia hemisphaerica)
CACTGAGATTTTGAGAGATTCTGTCTACATGttctttttatgagaacaaa
ctatataaaaagataagacttcgatggccaaaatattaagaacaagtaag
TTAAGAGTATTTTCAGGTTTTGCGTACtctaaaacaccctatttcttaga
aaaatgcttACAAAATGGTAAcaataagaaaatgttaagaaaatctAGGC
TTCAAACTCACACAGTTAaggaacatccgaaggcttcaaaaaattttcac
caCAATGCATTGTGGTGATTCTCAATAAAGcccaatttcatgattttgca
tgatttttgagaatttgatTATCATTTTCAAACCAAATGTCTCATTATAA
AATTAAAGTTGGACTTTCTCCTTCCAAATATAAAATGTTATGGATggttt
caagcaaaaaattttGGGACGTTAGGAATCGTTTAATTATCGTTTAATAA
ATTATTGTTTAAGCTAAAACACGAAATGCATTTTCAGGCTATAAAACACA
CAATGGTGTCACAATGCAACAAGCACaacgcaccgggtacggcaggagCG
GGGGGCGCCGTGCatgattttcacaataaattcCAATATTTTCCTCTTCG
TtggtaaaatcgcttaaatttcctcattcgccgtaccagatttacAAAGC
TTCCGTCGTGTATGCAATACAATGAAAGCAATTGAAAGAaattaccataa
aaaatttggCTATAGAAAAATAAATGGTGCCTCACAGTGCCATACGAAAT
AAACAAGAAATACTGTCCAAAGACTCTTCCCAAAAGCACGTGTACAGAGA
AAATCTTCGACTTCAACTTCATGCAAAATAGGAAGATTTTAAACTCAACA
TGAAGATTTTAACCTtaacacattttttttcttgagacaCTCTGTATTTT
TGACGttgaattacaaaaaaaagGTAATCACAAAATATGACAAGTTTCTT
TCGCTTTTTTCACAACAACATATTCTATAACGCAGACATCACCATCCAGT
TTTTGAATCTTCCAACAATGCACTGGATCTTTAAATACACCAAGTTGACC
GGAGATGAGGTGAAGCTCTTTGTTATGCACTCCATATTCCTCCATAAAGC
TTTTCAAAGTTTCATAGAGGTGTCTATAATAATGATGCTTGGGAATCGAA
TACTCAACTATCATTTCTTTAGAATCTAAACAAATTCTGACCAATATGGT
CTCTAACATAACATATCCAGTTGAATTTGGTAAAATATTACACTCCTCTA
CAGTTTTCTTATCTTGAAAGATGGTATTATCTTTTTTTAGATTGAAAATA
TCCGTAACTATTTTACTTTCTATTCTTAAATGTTTGAAGCTAGTGCTATT
GAGTCGTTTTGTGATATCCTCCAATCCCCACGAGTAATATCTTCTTAGGA
TTTTCATCTCCAATAATATTGTCGGAATCGCAGATCTCGATAAAGTGCGT
TTCAGAATGGTTAGCCCAAAAATGCACAACCACTTcaatattaaatgtct
ttttTTCAATCACAGCATTTAAGTGCATCTCtcctttgaaattttcattt
tgtgagaaaagaTCGAATATTTTGGTCGAATCGTTTTTAATCTCTTGATG
TTGGAAAAGTATACTTTGTTGACGGGGAGGGATGTTATGTGTTTTATGAA
CATAATTTTTAATGTCTTGGATAGATTCTATTTCTCTTGCATTCAACTCT
TCTTCATTTGTTAAGAATCTCAATTTGAGTGATTTCAGATGTTTGATTCC
ATATTCGAGACagatttcatcaattttttcgttttctttgaaGTAGGCaa
caacatgtaacaaaatACTATCCTGAATTATTCCCTTCCCTTTGAAAACA
GATTCACTTGTATATCGaatgatttttttatcatttgatATTAATATTTG
GTAATCTTTTGGGAGTCCTGTAAAAGCCTCAACATATTCATAGATTTCTG
CAGCATTAAAGTTGGTATAAACTGTAGTTATCATCTTATCTGCTCCAAAC
CCTTTAATGTTTAATCTCCATAAAATAGTTATAAGATCTGTAGGGTGCAC
TGCTTTTCTTCGTTCTACAATCTCCAGAGATCTCTTGCATCTTCTCAATC
CAAAATAAAGTTTGATTTTACTTGGCTCAAGATTCAAGTTGGTGTCAGAG
TTATCCGAAGTGGCAAACGTCGAAAGAAGTGTATCGTAATTAAGTGGTTT
TGCAATGTCATCTGTGTCAAATAAAAGTATTAAATCTTTTGGTATATTAA
GATATGTTGCAACTTTGTCACGTACATCTAAAATTGTATCACTCAATACA
AAGACATCAAAAACATCATTTGAACGGAAAGCTGGACGTCTATCGGAACG
AAAACCATGATAAACTAGAATTTGGACTCGTTGTGGCAAGGACATatttt
ttcttgtttaattAACAGATTAAAGAAGTTTTTTGATTCTTGTAGACTAG
CTTGTTGTGTCAATTTTCTCCCAGACCTAACGACAAacgcaattttttat
ttaacatttttgttttcaccaTGATGATTTTGACTTCATTTATACATGTC
ATTATTGACTTGAAATGTTCATAAATAATGACCTTCTTTTCATTGTCATG
GTTATCGAAAGTGATTAGAGCAGCATTTTAATTAAACATAAATATATAAT
TagatccatataacgttaatcATTAGTAGGCTATTTTAAAAATGCTGTTA
CATCACTTTCCGTTGTAAGAATTTCGAAGAAAATGTGAATCTTTAAAATA
TATAGGGGCAATACTATTACTGGAGAGAATTACATAGCACAATATTAGCG
ACTGGTTAACCAACTATTCAACAAAACTCTGAACcatcaaagaaatttta
atcAAGAAGAAACACAACAATGTCTATCAAAGTGAAAGTTTCAATATACC
ACTGTCTACATATTGACCAAGGTCCATTTTTTGAATCGAATGATTTTGAG
TTGAATGATACTATTGCATATGTAAATCAAAAGATTGCATGGAGAGGACT
GGTATATGGTTACCCCATGGCCATGGTACTTTTATTTGATAACGTTAATT
TTACAACACCTCTTCTTGGAGAAACTCGACTTTCAACTCTTGTTACATCA
GAATCTGGAATTGACTCAATTCCAAGGACGAATaaattaaaactttattt
tgGTTTACGAAAATGTAAAGAGTCtatgttgattttgaaaataagaaaaa
cagttttctcGACAGATCATATCACATCCTTATGGAGACTTACTGTTATA
GCTTTTGGAAGTGGCCAGATAATTACGACAACATATACTAATGATCGCAA
TATCGCTGAAATCTATGACTATTTAGAGTCCATTACAGGCTTACCGGCTG
ATAACCTGATATTACTTTTTGATGATaaaacaccttttcaatatacaAAC
GAGTCAGTTTTTCATGAACATGTGTTCCTAGATGTTATCGCTTGTTTCCA
AGAAAACGAAAAACTGGAAAATATTTGTCTCAAATATGGAATCAAACATC
TGAAATCACTTAAGTTGAGATTCTTAACAAAAGAAGAAGAGTTGAACCCA
AGAGAAATGGGATCAATCAAAGACATTAAAAATTATGTTCATAAAACACA
TGATATTCCTCTCCATCAACAAAGTATACTTTTCCAACATCAAGAGATTG
AAAACGATTCGACTAAGATATTTGATCTTTTGTTACAAAATGGAGTTTTG
GATGGAGATTTGTGTTTTCACCTCGTCATTAGGAAAAAGCCATTTGAAAT
TACAGTCATGTTTCATCACCAAGGGCGTACAGGTGTTTCGGACCATTTGG
TAGAGATTTGTGATTCAGACACAATAGGAGAGGCTAAAATGAGAATACTC
CGGCAATATTACCCTTGGAAGATTGAAAACATCCAAAGACAACTTGAGGA
TACAAACTCCGCTGTTTCATCAACTGGTAGAGAATTTCCTTCTgagtttt
ttcaatttcagaagaaaaacaTCACTTATTTGGACTGTCAGACTGTAGAA
GAATGCAGATTCTTACCAGATCATGAATATCAGATGAAAGAAAGCCTGTT
GATTAGAATTCGTTTAGATTCTACTCAATCAGATGTAGGTGTTGTGCACT
ATACGATACCTAAAGATCATCTCTTGctttatcaaactttaaaagatttt
aagagaCAGTATGGAGTTTATCGTTGGGAGCTCCATCTCCTGCCAGATCA
AACGGGCGTGACTAAAAATCCTAAACATTGTTGGATGATTGAATCAATCG
ACGTGGACGTGTTTGTTGTAGATTACGCTGTTATAAAGAGGCGATCATGT
TATATAATGTAAAGTTAAAATTTATACTTTCGATCTCTTCTCGTAAAGGA
AGAGtagaaaaatatgatttttttaggaACTTTTTTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042243XLOC_042243Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067638-exon-scaffold_472-1491911889:107194..111583TCONS_00067638-exon-scaffold_472-1491911889:107194..111583Clytia hemisphaericaexon
TCONS_00067638-exon-scaffold_472-1510915933:107194..111583TCONS_00067638-exon-scaffold_472-1510915933:107194..111583Clytia hemisphaericaexon
TCONS_00067638-exon-scaffold_472-1575043694:107194..111583TCONS_00067638-exon-scaffold_472-1575043694:107194..111583Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:107194..111583 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0893337	0.0645705	0.0443924	0.101916	0.937267	0.468515	1.72791	1.91075	0.467486	0.854032	1.22976	0.162288	4.71855	1.38039	0.931815	2.16961	0.46034	0.880366	1.04407	2.12265	0.0390658	0	0.0425953	0.0419773	0.225892	0.125458	0.40946	0.0876833	0.210347	0.0670805
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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