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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067626 ID=TCONS_00067626|Name=TCONS_00067626|organism=Clytia hemisphaerica|type=transcript|length=2298bp
GAAGGATAGGTCATATCTGGTGGGCTATTTGCCCGTTTTCCAGTGAGGGA
TCCCATTATAGGCTATACTACCGTTTCATAATAAAGCATCAACCTCAAAA
ATTAGAAGTTGATTTTAACTATTACCTTGTGGGCATTGGATATCTATCTA
ctgaacaaaaaataattctaTCCTATTGTAATTATTTCGAAATACAATAA
GATAAAGATTTTACTATTGTATAGAATTTATACAGTAACTgagttaaaaa
aaggaaaatcaaaattctgAGCTTGCAGAGCTACTTCCACCATAAGACGT
TTCAGCAGAAGTTTGAGTGTCAAGAGTTCTCATTCTGTTTTTGTGGGAAT
ATTTTCTCAGTGATCTAACAACACGTTTTTGATATCGTTTAGAGAGAGGT
CCTCCCACATAAACAAACCATAACATCACTCCACGTAATGAACGAAACAC
TGAGTAAACAAAAGCGAACACAACATTCGTCCTTTCTTTACTTTGACTGT
CCTCAATATTGGTCAATTGAACGTAACCGAAAATCTCAGTCAACCCAAGG
ATCAATGCAAGTTTGATAGCCATTTTGAGATAGtctaatgtttttgtttt
cttggctGTGGAATGATCGAGTTTGCTTTGCGTACGCCTCTTTTGTTTGA
TGATGTTGAAAACGGTGAATGAGAGCGTGAACAGAGCGATCAAAATCACC
AGAGCTGTTGGTACAATGTACAACACGATCCTAGCGTTTAAGTTTGTAAT
CCAACACACATGGTTCTCTCCGTAACCAACAGCAACATCTCCTGATGTAT
CAAGTCCCAAAGCAATACTAACTATGACGAGAGGGATACCAAACGCCATG
GCTGAGCGATAAGACATTCTTTTTAGTTCACGATCCCTCGAGTTGGAAGT
GAACGATCCAAAACGTTTCACTAAATCGTATGAAATTATCAACACCCAGA
AGAAAGCGGATAGAAGGCTCCAATGCATTGCTACAGCTACTGTGGTGCAT
GATGTTTTATCTTCATGAGCTTTCAATGTTGacaggaaaaaaatgtcgga
aaaGAGTAAGGATAAACACATCAAACAGTTATTTAGTCCTGGTACAGTTC
TCAAatccttgaaaataaaatatgtgGTGATGATCCAGATGTAACATACA
ATGCTAAGAGGTGTTCCTATGACTGTGATGTAAAACTCGATTTGGCGGAT
GATATAGTATCTATCATTATCTTTCGAAATGGATGAGGTGTTTTTATTGT
TTGCAACGCAAGTTTCATAGCCGTCAGACGTAGGTATATATTCATTGAAT
GTATACTGAATATGCGATTTGGTTATTAATTTCAAATTGTCAGTAATGTT
GATGATATCAGAGCTGTTCAAAGTTTTTCGGAAACATGGTTTTGTTAAAT
AGAATCCTTCACAAACTGAGAAGTACTCTTGAAATGAATCATTCGAACTT
CTTTTGGATATCCAAAGAGTAAGGTTTGATGGATGGAGTGATTGATTTCG
GTATGACATTGTTTTTGACAcagtgtttttattgaataaaatttcatcaa
TGGAGACAATTTTTGGTTTTGCGCAAGTTCGGTGTTCTGGGAAGACCCTA
GAGAAGTCTAAGCCATGATTTTTGGATACCAACCTCTCGTCGAAGTAAGG
TGCCAATACAAAGCTCGTATTTGGATTTGCATTAAATTGGAGCTGCTCGA
ATATTTGCAATGTGGAAGTATTCAAAGTTCGGTAGACTATTCTAGAATTG
TCTTCTACGAAATGTTCTAATGTGATTTTTGGGATAATGGAAGGTGCATT
GTGTTGGACGGAAGATGCGTTGAATGTTTTTGGTTGGATCACATAAAGGG
CGTACTTGAAATTGGAAATAAAGAATTCTGTTAAGTTATTGAACGGAAAA
CTTCTATCTGTCTTTGCTGTTGTGAGACCACGAGTTTCCACTATTGGTTT
ATCTTCATCACCAATGGTTAGTAGAGGCTTGCGACGAACACATTTTCCAC
CTCCGTCGATTATCACATAGTTGGGTGGACAGCGAAATGGAACACATTTC
GATTCGAATGTATCATACAGCTGATGGTCGGGGCAGATGGTTGTGGTTGG
TTCTTGTCCCCCGCTTGCTCTCCGCGAGAAAGACAGTAAGAGGGACCAGG
AAAGTTGCGGTTTATTTGTGTATAGCGGTCTTGGTGTGTGCCCTGGAAGC
GTTGGTTTTACTACATCTATTCCTTTATTACAATCGTTCTCCCATACTTT
GCAGACTTTTTTATCACAATAGTTCAATTGAGTCAGAAAGTTACCAGT Run BLAST on NCBI protein sequence of TCONS_00067626-protein >TCONS_00067626-protein ID=TCONS_00067626-protein|Name=TCONS_00067626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=679bp
TGNFLTQLNYCDKKVCKVWENDCNKGIDVVKPTLPGHTPRPLYTNKPQLS
WSLLLSFSRRASGGQEPTTTICPDHQLYDTFESKCVPFRCPPNYVIIDGG
GKCVRRKPLLTIGDEDKPIVETRGLTTAKTDRSFPFNNLTEFFISNFKYA
LYVIQPKTFNASSVQHNAPSIIPKITLEHFVEDNSRIVYRTLNTSTLQIF
EQLQFNANPNTSFVLAPYFDERLVSKNHGLDFSRVFPEHRTCAKPKIVSI
DEILFNKNTVSKTMSYRNQSLHPSNLTLWISKRSSNDSFQEYFSVCEGFY
LTKPCFRKTLNSSDIINITDNLKLITKSHIQYTFNEYIPTSDGYETCVAN
NKNTSSISKDNDRYYIIRQIEFYITVIGTPLSIVCYIWIITTYFIFKDLR
TVPGLNNCLMCLSLLFSDIFFLSTLKAHEDKTSCTTVAVAMHWSLLSAFF
WVLIISYDLVKRFGSFTSNSRDRELKRMSYRSAMAFGIPLVIVSIALGLD
TSGDVAVGYGENHVCWITNLNARIVLYIVPTALVILIALFTLSFTVFNII
KQKRRTQSKLDHSTAKKTKTLDYLKMAIKLALILGLTEIFGYVQLTNIED
SQSKERTNVVFAFVYSVFRSLRGVMLWFVYVGGPLSKRYQKRVVRSLRKY
SHKNRMRTLDTQTSAETSYGGSSSASSEF Run BLAST on NCBI transcript from alignment at scaffold_471:452288..454585 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067626 ID=TCONS_00067626|Name=TCONS_00067626|organism=Clytia hemisphaerica|type=transcript|length=2298bp|location=Sequence derived from alignment at scaffold_471:452288..454585 (Clytia hemisphaerica)
ACTGGTAACTTTCTGACTCAATTGAACTATTGTGATAAAAAAGTCTGCAA
AGTATGGGAGAACGATTGTAATAAAGGAATAGATGTAGTAAAACCAACGC
TTCCAGGGCACACACCAAGACCGCTATACACAAATAAACCGCAACTTTCC
TGGTCCCTCTTACTGTCTTTCTCGCGGAGAGCAAGCGGGGGACAAGAACC
AACCACAACCATCTGCCCCGACCATCAGCTGTATGATACATTCGAATCGA
AATGTGTTCCATTTCGCTGTCCACCCAACTATGTGATAATCGACGGAGGT
GGAAAATGTGTTCGTCGCAAGCCTCTACTAACCATTGGTGATGAAGATAA
ACCAATAGTGGAAACTCGTGGTCTCACAACAGCAAAGACAGATAGAAGTT
TTCCGTTCAATAACTTAACAGAATTCTTTATTTCCAATTTCAAGTACGCC
CTTTATGTGATCCAACCAAAAACATTCAACGCATCTTCCGTCCAACACAA
TGCACCTTCCATTATCCCAAAAATCACATTAGAACATTTCGTAGAAGACA
ATTCTAGAATAGTCTACCGAACTTTGAATACTTCCACATTGCAAATATTC
GAGCAGCTCCAATTTAATGCAAATCCAAATACGAGCTTTGTATTGGCACC
TTACTTCGACGAGAGGTTGGTATCCAAAAATCATGGCTTAGACTTCTCTA
GGGTCTTCCCAGAACACCGAACTTGCGCAAAACCAAAAATTGTCTCCAtt
gatgaaattttattcaataaaaacactgTGTCAAAAACAATGTCATACCG
AAATCAATCACTCCATCCATCAAACCTTACTCTTTGGATATCCAAAAGAA
GTTCGAATGATTCATTTCAAGAGTACTTCTCAGTTTGTGAAGGATTCTAT
TTAACAAAACCATGTTTCCGAAAAACTTTGAACAGCTCTGATATCATCAA
CATTACTGACAATTTGAAATTAATAACCAAATCGCATATTCAGTATACAT
TCAATGAATATATACCTACGTCTGACGGCTATGAAACTTGCGTTGCAAAC
AATAAAAACACCTCATCCATTTCGAAAGATAATGATAGATACTATATCAT
CCGCCAAATCGAGTTTTACATCACAGTCATAGGAACACCTCTTAGCATTG
TATGTTACATCTGGATCATCACcacatattttattttcaaggatTTGAGA
ACTGTACCAGGACTAAATAACTGTTTGATGTGTTTATCCTTACTCttttc
cgacatttttttcctgtCAACATTGAAAGCTCATGAAGATAAAACATCAT
GCACCACAGTAGCTGTAGCAATGCATTGGAGCCTTCTATCCGCTTTCTTC
TGGGTGTTGATAATTTCATACGATTTAGTGAAACGTTTTGGATCGTTCAC
TTCCAACTCGAGGGATCGTGAACTAAAAAGAATGTCTTATCGCTCAGCCA
TGGCGTTTGGTATCCCTCTCGTCATAGTTAGTATTGCTTTGGGACTTGAT
ACATCAGGAGATGTTGCTGTTGGTTACGGAGAGAACCATGTGTGTTGGAT
TACAAACTTAAACGCTAGGATCGTGTTGTACATTGTACCAACAGCTCTGG
TGATTTTGATCGCTCTGTTCACGCTCTCATTCACCGTTTTCAACATCATC
AAACAAAAGAGGCGTACGCAAAGCAAACTCGATCATTCCACagccaagaa
aacaaaaacattagaCTATCTCAAAATGGCTATCAAACTTGCATTGATCC
TTGGGTTGACTGAGATTTTCGGTTACGTTCAATTGACCAATATTGAGGAC
AGTCAAAGTAAAGAAAGGACGAATGTTGTGTTCGCTTTTGTTTACTCAGT
GTTTCGTTCATTACGTGGAGTGATGTTATGGTTTGTTTATGTGGGAGGAC
CTCTCTCTAAACGATATCAAAAACGTGTTGTTAGATCACTGAGAAAATAT
TCCCACAAAAACAGAATGAGAACTCTTGACACTCAAACTTCTGCTGAAAC
GTCTTATGGTGGAAGTAGCTCTGCAAGCTcagaattttgattttcctttt
tttaactcAGTTACTGTATAAATTCTATACAATAGTAAAATCTTTATCTT
ATTGTATTTCGAAATAATTACAATAGGAtagaattattttttgttcagTA
GATAGATATCCAATGCCCACAAGGTAATAGTTAAAATCAACTTCTAATTT
TTGAGGTTGATGCTTTATTATGAAACGGTAGTATAGCCTATAATGGGATC
CCTCACTGGAAAACGGGCAAATAGCCCACCAGATATGACCTATCCTTC Coding sequence (CDS) from alignment at scaffold_471:452288..454585 >TCONS_00067626 ID=TCONS_00067626|Name=TCONS_00067626|organism=Clytia hemisphaerica|type=CDS|length=2040bp|location=Sequence derived from alignment at scaffold_471:452288..454585 (Clytia hemisphaerica)
ACTGGTAACTTTCTGACTCAATTGAACTATTGTGATAAAAAAGTCTGCAA
AGTATGGGAGAACGATTGTAATAAAGGAATAGATGTAGTAAAACCAACGC
TTCCAGGGCACACACCAAGACCGCTATACACAAATAAACCGCAACTTTCC
TGGTCCCTCTTACTGTCTTTCTCGCGGAGAGCAAGCGGGGGACAAGAACC
AACCACAACCATCTGCCCCGACCATCAGCTGTATGATACATTCGAATCGA
AATGTGTTCCATTTCGCTGTCCACCCAACTATGTGATAATCGACGGAGGT
GGAAAATGTGTTCGTCGCAAGCCTCTACTAACCATTGGTGATGAAGATAA
ACCAATAGTGGAAACTCGTGGTCTCACAACAGCAAAGACAGATAGAAGTT
TTCCGTTCAATAACTTAACAGAATTCTTTATTTCCAATTTCAAGTACGCC
CTTTATGTGATCCAACCAAAAACATTCAACGCATCTTCCGTCCAACACAA
TGCACCTTCCATTATCCCAAAAATCACATTAGAACATTTCGTAGAAGACA
ATTCTAGAATAGTCTACCGAACTTTGAATACTTCCACATTGCAAATATTC
GAGCAGCTCCAATTTAATGCAAATCCAAATACGAGCTTTGTATTGGCACC
TTACTTCGACGAGAGGTTGGTATCCAAAAATCATGGCTTAGACTTCTCTA
GGGTCTTCCCAGAACACCGAACTTGCGCAAAACCAAAAATTGTCTCCAtt
gatgaaattttattcaataaaaacactgTGTCAAAAACAATGTCATACCG
AAATCAATCACTCCATCCATCAAACCTTACTCTTTGGATATCCAAAAGAA
GTTCGAATGATTCATTTCAAGAGTACTTCTCAGTTTGTGAAGGATTCTAT
TTAACAAAACCATGTTTCCGAAAAACTTTGAACAGCTCTGATATCATCAA
CATTACTGACAATTTGAAATTAATAACCAAATCGCATATTCAGTATACAT
TCAATGAATATATACCTACGTCTGACGGCTATGAAACTTGCGTTGCAAAC
AATAAAAACACCTCATCCATTTCGAAAGATAATGATAGATACTATATCAT
CCGCCAAATCGAGTTTTACATCACAGTCATAGGAACACCTCTTAGCATTG
TATGTTACATCTGGATCATCACcacatattttattttcaaggatTTGAGA
ACTGTACCAGGACTAAATAACTGTTTGATGTGTTTATCCTTACTCttttc
cgacatttttttcctgtCAACATTGAAAGCTCATGAAGATAAAACATCAT
GCACCACAGTAGCTGTAGCAATGCATTGGAGCCTTCTATCCGCTTTCTTC
TGGGTGTTGATAATTTCATACGATTTAGTGAAACGTTTTGGATCGTTCAC
TTCCAACTCGAGGGATCGTGAACTAAAAAGAATGTCTTATCGCTCAGCCA
TGGCGTTTGGTATCCCTCTCGTCATAGTTAGTATTGCTTTGGGACTTGAT
ACATCAGGAGATGTTGCTGTTGGTTACGGAGAGAACCATGTGTGTTGGAT
TACAAACTTAAACGCTAGGATCGTGTTGTACATTGTACCAACAGCTCTGG
TGATTTTGATCGCTCTGTTCACGCTCTCATTCACCGTTTTCAACATCATC
AAACAAAAGAGGCGTACGCAAAGCAAACTCGATCATTCCACagccaagaa
aacaaaaacattagaCTATCTCAAAATGGCTATCAAACTTGCATTGATCC
TTGGGTTGACTGAGATTTTCGGTTACGTTCAATTGACCAATATTGAGGAC
AGTCAAAGTAAAGAAAGGACGAATGTTGTGTTCGCTTTTGTTTACTCAGT
GTTTCGTTCATTACGTGGAGTGATGTTATGGTTTGTTTATGTGGGAGGAC
CTCTCTCTAAACGATATCAAAAACGTGTTGTTAGATCACTGAGAAAATAT
TCCCACAAAAACAGAATGAGAACTCTTGACACTCAAACTTCTGCTGAAAC
GTCTTATGGTGGAAGTAGCTCTGCAAGCTcagaattttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067626-exon-scaffold_471-1491911889:452288..454585 | TCONS_00067626-exon-scaffold_471-1491911889:452288..454585 | Clytia hemisphaerica | exon |
| TCONS_00067626-exon-scaffold_471-1510915933:452288..454585 | TCONS_00067626-exon-scaffold_471-1510915933:452288..454585 | Clytia hemisphaerica | exon |
| TCONS_00067626-exon-scaffold_471-1575043694:452288..454585 | TCONS_00067626-exon-scaffold_471-1575043694:452288..454585 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_471 | supercontig | scaffold_471:452288..454585 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
| GO:0004888 | transmembrane signaling receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
| GO:0007166 | cell surface receptor signaling pathway |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007166 |
cell surface receptor signaling pathway |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
| molecular_function |
GO:0004888 |
transmembrane signaling receptor activity |
Blast
The following BLAST results are available for this feature:
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