TCONS_00067622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067622
Unique NameTCONS_00067622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067622 ID=TCONS_00067622|Name=TCONS_00067622|organism=Clytia hemisphaerica|type=transcript|length=306bp
ACATTGATGAAGGGACAACCAAAGCAGAACTTGCAAGTTTTGCTGATGAC
ACACGAGTAAAGAAAGGAATCCAAAACATCATTGACCAGTTTCACCTACA
AAACGATCTTAACAATGTTTATCAATGGTCGACCAAAAACAAAAtgatgt
taaatggaaaaaagttcGAGCATCTCCATTATGGAAACGGACCAGCCACC
AGCTATTTCACAGGTGAAGGAAAGATAATCCAAACCAAATCTTCAACAAG
GGATCTTGGTGTTACCATGTCAGACGATGCGAAATTCAACCAACATATTC
TAACCA
Run BLAST on NCBI

protein sequence of TCONS_00067622-protein

>TCONS_00067622-protein ID=TCONS_00067622-protein|Name=TCONS_00067622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
IDEGTTKAELASFADDTRVKKGIQNIIDQFHLQNDLNNVYQWSTKNKMML
NGKKFEHLHYGNGPATSYFTGEGKIIQTKSSTRDLGVTMSDDAKFNQHIL
T
Run BLAST on NCBI

transcript from alignment at scaffold_471:335828..336133

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067622 ID=TCONS_00067622|Name=TCONS_00067622|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at scaffold_471:335828..336133 (Clytia hemisphaerica)
TGGTTAGAATATGTTGGTTGAATTTCGCATCGTCTGACATGGTAACACCA
AGATCCCTTGTTGAAGATTTGGTTTGGATTATCTTTCCTTCACCTGTGAA
ATAGCTGGTGGCTGGTCCGTTTCCATAATGGAGATGCTCgaacttttttc
catttaacatcaTTTTGTTTTTGGTCGACCATTGATAAACATTGTTAAGA
TCGTTTTGTAGGTGAAACTGGTCAATGATGTTTTGGATTCCTTTCTTTAC
TCGTGTGTCATCAGCAAAACTTGCAAGTTCTGCTTTGGTTGTCCCTTCAT
CAATGT

Coding sequence (CDS) from alignment at scaffold_471:335828..336133

>TCONS_00067622 ID=TCONS_00067622|Name=TCONS_00067622|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_471:335828..336133 (Clytia hemisphaerica)
GGTTAGAATATGTTGGTTGAATTTCGCATCGTCTGACATGGTAACACCAA
GATCCCTTGTTGAAGATTTGGTTTGGATTATCTTTCCTTCACCTGTGAAA
TAGCTGGTGGCTGGTCCGTTTCCATAATGGAGATGCTCgaacttttttcc
atttaacatcaTTTTGTTTTTGGTCGACCATTGATAAACATTGTTAAGAT
CGTTTTGTAGGTGAAACTGGTCAATGATGTTTTGGATTCCTTTCTTTACT
CGTGTGTCATCAGCAAAACTTGCAAGTTCTGCTTTGGTTGTCCCTTCATC
AAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042231XLOC_042231Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067622-proteinTCONS_00067622-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067622-exon-scaffold_471-1491911889:335828..336133TCONS_00067622-exon-scaffold_471-1491911889:335828..336133Clytia hemisphaericaexon
TCONS_00067622-exon-scaffold_471-1510915933:335828..336133TCONS_00067622-exon-scaffold_471-1510915933:335828..336133Clytia hemisphaericaexon
TCONS_00067622-exon-scaffold_471-1575043694:335828..336133TCONS_00067622-exon-scaffold_471-1575043694:335828..336133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_471supercontigscaffold_471:335828..336133 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.12032	14.1317	13.2083	11.7584	24.6445	17.2239	23.8131	22.4826	8.10731	4.93099	7.32842	7.49507	5.03593	6.55089	2.93761	3.4429	2.7384	3.46497	4.69638	3.30967	4.10193	10.2613	3.88788	3.64362	10.9876	11.7531	3.24049	4.06769	4.38804	4.22774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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