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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067616 ID=TCONS_00067616|Name=TCONS_00067616|organism=Clytia hemisphaerica|type=transcript|length=1913bp
ACCTTTATAATTTGGTCAAACAAAAAACCTgcttcaagtcaaaaaatggC
ACTTGTATTGACTTGATTCTAACGAACAGGAAGCATTCTTTTCAATTCAC
TGGTGCTTTAGAAACGGGTTCTAGTGATTATCACTTGCTAATTCATACTA
TGATGAAATCTACATTTGAGAAATTACCACCTGTGAAAAAGAAGTACAGa
gattataaaaattttgactCGGTTTTATTTCTTAACGAGCTAAATTGTCa
acttaaaaatataaatattgttGATTATAGTGTATTTGATAAGATTTTTG
TTACATTATTAGATGAGCATGCacctcaaaaaaaaagtttgtccgAGCTA
ATAATAAGCAACATGTAACTAAGGATCTCAGGAAAGCTATTATGCTCCGT
TCCCAACTTAAACGCACTGCTAATAAAACAAAGAATCCTGAGGATGTTGC
TCGTTATAATCGTCAGAGAAACTTTGTTGTTAATAAAAATAGGAAAGCTA
AGAAATCTTTCTTCCTCAAAAATGACCCAAAACAATCTCCCAAGGGATTT
TGGGACACCTTTATACCTTTGTTCtcaaataaggtcaatattGCGGGGGA
AAGAATTCATATCGTTGAAAATGGAAGTATTGTATCTAATGACTTGGATA
TTGCTGAAACTTTCAACGATCATTACAATATCAATACTGTTACTGACAGA
TTGGACGTTCCAAGTTGGAACAATGTTACAGGTGAAGGCTCTGATAGTGT
CAATTCCGCCATAAATAAATTTGCTGATCATCCAAGTAtaatcaaaattc
ttgaaaaaaggcGTGATGTTTATAAATTTGAGCTCTTACCTGTAACAAAT
TCAGATATGCTTAAAGCCATAAATCATCTGAATGAATCCAAGTCAGTCAG
TGGTAGCATTCCTACTAAAATCATAAAGTTAGCCAAATTTGTTTGTGCTC
CAACTTTGACATCATACTTCAATAACTCTCTTCAATCCCAAAACTTTCCT
GACAGCTTGGAGCTTGCTTATATAATTCCAGTCCATAAGAAAAACAGCAA
ACATGACAAGGATAATTACAGGCCCGTCAGTCTCCTCCCATCTCTggcta
aaatctttgaaaaacttacTTCAAATCAACTCAAAACCTTCTTTGAATCA
TTTTTCTCTAACGGATTCTGTGGTTTTCGTAAACAGTATAGCATGCAGAG
TGCTTTACTAAATATGTTACGAAAATGGCAGAATTCactgtcaaaatcaa
aaaagattgGAGCAATTCTAATGGATCTGTCTAAAGCCTTTGACTGTTTG
CCTCATGATCTTCTGATCGCAAAACTTTATGCATATGGATTGGATTGTAG
AAGCCTAGCTTTTATGCAAAGTTATTTAAAAAACAGAAAGCATAGGGTCA
GAGTTGGTTCATCGTTCAGTAATTGGCTACCTTTGCTATTTGGTGTGCCT
CAGGGATCTATTTTAGGACCTattcttttcaatgtttttatcaatgactt
gtttttctttgttaatgAAGACCTCTGTAACTTCGCTGATGACGATACTC
TGCACAAAAGTGCTTCGTCTCTAGATGAGGCCCTCGAAGCTTTAATTCTA
GACCTAGGAATCATTCTAGCTTGGTTTAGACACAACTCCCTTGTTGCAAA
TCCAGAGAAGTTTCAGGTGTTGTTTCCAGGCACAAAGAATGCAAATATAG
TTTTCAATGTTGGAAATATTACATTAGAGTCTTCAGAGAGCGTGAAACTG
CTTGGAGTAACTATCGACAGTAGCCTCACTTTTTATAATCACGTACAGGA
CATCTGCAAAAAGGCTGCACAGAAGACCAAAACTATTTTTAGAATTAGAG
CATATTTAAACCAAGAGCAAGCAGATTTATTATTTAATAGTTTTATTTTA
TCTGCTTTTAGNN Run BLAST on NCBI protein sequence of TCONS_00067616-protein >TCONS_00067616-protein ID=TCONS_00067616-protein|Name=TCONS_00067616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=507bp
MLRSQLKRTANKTKNPEDVARYNRQRNFVVNKNRKAKKSFFLKNDPKQSP
KGFWDTFIPLFSNKVNIAGERIHIVENGSIVSNDLDIAETFNDHYNINTV
TDRLDVPSWNNVTGEGSDSVNSAINKFADHPSIIKILEKRRDVYKFELLP
VTNSDMLKAINHLNESKSVSGSIPTKIIKLAKFVCAPTLTSYFNNSLQSQ
NFPDSLELAYIIPVHKKNSKHDKDNYRPVSLLPSLAKIFEKLTSNQLKTF
FESFFSNGFCGFRKQYSMQSALLNMLRKWQNSLSKSKKIGAILMDLSKAF
DCLPHDLLIAKLYAYGLDCRSLAFMQSYLKNRKHRVRVGSSFSNWLPLLF
GVPQGSILGPILFNVFINDLFFFVNEDLCNFADDDTLHKSASSLDEALEA
LILDLGIILAWFRHNSLVANPEKFQVLFPGTKNANIVFNVGNITLESSES
VKLLGVTIDSSLTFYNHVQDICKKAAQKTKTIFRIRAYLNQEQADLLFNS
FILSAFX Run BLAST on NCBI transcript from alignment at scaffold_471:276536..278448 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067616 ID=TCONS_00067616|Name=TCONS_00067616|organism=Clytia hemisphaerica|type=transcript|length=1913bp|location=Sequence derived from alignment at scaffold_471:276536..278448 (Clytia hemisphaerica)
NNCTAAAAGCAGATAAAATAAAACTATTAAATAATAAATCTGCTTGCTCT
TGGTTTAAATATGCTCTAATTCTAAAAATAGTTTTGGTCTTCTGTGCAGC
CTTTTTGCAGATGTCCTGTACGTGATTATAAAAAGTGAGGCTACTGTCGA
TAGTTACTCCAAGCAGTTTCACGCTCTCTGAAGACTCTAATGTAATATTT
CCAACATTGAAAACTATATTTGCATTCTTTGTGCCTGGAAACAACACCTG
AAACTTCTCTGGATTTGCAACAAGGGAGTTGTGTCTAAACCAAGCTAGAA
TGATTCCTAGGTCTAGAATTAAAGCTTCGAGGGCCTCATCTAGAGACGAA
GCACTTTTGTGCAGAGTATCGTCATCAGCGAAGTTACAGAGGTCTTcatt
aacaaagaaaaacaagtcattgataaaaacattgaaaagaatAGGTCCTA
AAATAGATCCCTGAGGCACACCAAATAGCAAAGGTAGCCAATTACTGAAC
GATGAACCAACTCTGACCCTATGCTTTCTGTTTTTTAAATAACTTTGCAT
AAAAGCTAGGCTTCTACAATCCAATCCATATGCATAAAGTTTTGCGATCA
GAAGATCATGAGGCAAACAGTCAAAGGCTTTAGACAGATCCATTAGAATT
GCTCcaatcttttttgattttgacagtGAATTCTGCCATTTTCGTAACAT
ATTTAGTAAAGCACTCTGCATGCTATACTGTTTACGAAAACCACAGAATC
CGTTAGAGAAAAATGATTCAAAGAAGGTTTTGAGTTGATTTGAAgtaagt
ttttcaaagattttagccAGAGATGGGAGGAGACTGACGGGCCTGTAATT
ATCCTTGTCATGTTTGCTGTTTTTCTTATGGACTGGAATTATATAAGCAA
GCTCCAAGCTGTCAGGAAAGTTTTGGGATTGAAGAGAGTTATTGAAGTAT
GATGTCAAAGTTGGAGCACAAACAAATTTGGCTAACTTTATGATTTTAGT
AGGAATGCTACCACTGACTGACTTGGATTCATTCAGATGATTTATGGCTT
TAAGCATATCTGAATTTGTTACAGGTAAGAGCTCAAATTTATAAACATCA
CgccttttttcaagaattttgattaTACTTGGATGATCAGCAAATTTATT
TATGGCGGAATTGACACTATCAGAGCCTTCACCTGTAACATTGTTCCAAC
TTGGAACGTCCAATCTGTCAGTAACAGTATTGATATTGTAATGATCGTTG
AAAGTTTCAGCAATATCCAAGTCATTAGATACAATACTTCCATTTTCAAC
GATATGAATTCTTTCCCCCGCaatattgaccttatttgaGAACAAAGGTA
TAAAGGTGTCCCAAAATCCCTTGGGAGATTGTTTTGGGTCATTTTTGAGG
AAGAAAGATTTCTTAGCTTTCCTATTTTTATTAACAACAAAGTTTCTCTG
ACGATTATAACGAGCAACATCCTCAGGATTCTTTGTTTTATTAGCAGTGC
GTTTAAGTTGGGAACGGAGCATAATAGCTTTCCTGAGATCCTTAGTTACA
TGTTGCTTATTATTAGCTcggacaaactttttttttgaggtGCATGCTCA
TCTAATAATGTAACAAAAATCTTATCAAATACACTATAATCaacaatatt
tatatttttaagttGACAATTTAGCTCGTTAAGAAATAAAACCGagtcaa
aatttttataatctCTGTACTTCTTTTTCACAGGTGGTAATTTCTCAAAT
GTAGATTTCATCATAGTATGAATTAGCAAGTGATAATCACTAGAACCCGT
TTCTAAAGCACCAGTGAATTGAAAAGAATGCTTCCTGTTCGTTAGAATCA
AGTCAATACAAGTGccattttttgacttgaagcAGGTTTTTTGTTTGACC
AAATTATAAAGGT Coding sequence (CDS) from alignment at scaffold_471:276536..278448 >TCONS_00067616 ID=TCONS_00067616|Name=TCONS_00067616|organism=Clytia hemisphaerica|type=CDS|length=1521bp|location=Sequence derived from alignment at scaffold_471:276536..278448 (Clytia hemisphaerica)
NCTAAAAGCAGATAAAATAAAACTATTAAATAATAAATCTGCTTGCTCTT
GGTTTAAATATGCTCTAATTCTAAAAATAGTTTTGGTCTTCTGTGCAGCC
TTTTTGCAGATGTCCTGTACGTGATTATAAAAAGTGAGGCTACTGTCGAT
AGTTACTCCAAGCAGTTTCACGCTCTCTGAAGACTCTAATGTAATATTTC
CAACATTGAAAACTATATTTGCATTCTTTGTGCCTGGAAACAACACCTGA
AACTTCTCTGGATTTGCAACAAGGGAGTTGTGTCTAAACCAAGCTAGAAT
GATTCCTAGGTCTAGAATTAAAGCTTCGAGGGCCTCATCTAGAGACGAAG
CACTTTTGTGCAGAGTATCGTCATCAGCGAAGTTACAGAGGTCTTcatta
acaaagaaaaacaagtcattgataaaaacattgaaaagaatAGGTCCTAA
AATAGATCCCTGAGGCACACCAAATAGCAAAGGTAGCCAATTACTGAACG
ATGAACCAACTCTGACCCTATGCTTTCTGTTTTTTAAATAACTTTGCATA
AAAGCTAGGCTTCTACAATCCAATCCATATGCATAAAGTTTTGCGATCAG
AAGATCATGAGGCAAACAGTCAAAGGCTTTAGACAGATCCATTAGAATTG
CTCcaatcttttttgattttgacagtGAATTCTGCCATTTTCGTAACATA
TTTAGTAAAGCACTCTGCATGCTATACTGTTTACGAAAACCACAGAATCC
GTTAGAGAAAAATGATTCAAAGAAGGTTTTGAGTTGATTTGAAgtaagtt
tttcaaagattttagccAGAGATGGGAGGAGACTGACGGGCCTGTAATTA
TCCTTGTCATGTTTGCTGTTTTTCTTATGGACTGGAATTATATAAGCAAG
CTCCAAGCTGTCAGGAAAGTTTTGGGATTGAAGAGAGTTATTGAAGTATG
ATGTCAAAGTTGGAGCACAAACAAATTTGGCTAACTTTATGATTTTAGTA
GGAATGCTACCACTGACTGACTTGGATTCATTCAGATGATTTATGGCTTT
AAGCATATCTGAATTTGTTACAGGTAAGAGCTCAAATTTATAAACATCAC
gccttttttcaagaattttgattaTACTTGGATGATCAGCAAATTTATTT
ATGGCGGAATTGACACTATCAGAGCCTTCACCTGTAACATTGTTCCAACT
TGGAACGTCCAATCTGTCAGTAACAGTATTGATATTGTAATGATCGTTGA
AAGTTTCAGCAATATCCAAGTCATTAGATACAATACTTCCATTTTCAACG
ATATGAATTCTTTCCCCCGCaatattgaccttatttgaGAACAAAGGTAT
AAAGGTGTCCCAAAATCCCTTGGGAGATTGTTTTGGGTCATTTTTGAGGA
AGAAAGATTTCTTAGCTTTCCTATTTTTATTAACAACAAAGTTTCTCTGA
CGATTATAACGAGCAACATCCTCAGGATTCTTTGTTTTATTAGCAGTGCG
TTTAAGTTGGGAACGGAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067616-exon-scaffold_471-1491911889:276536..278448 | TCONS_00067616-exon-scaffold_471-1491911889:276536..278448 | Clytia hemisphaerica | exon |
| TCONS_00067616-exon-scaffold_471-1510915933:276536..278448 | TCONS_00067616-exon-scaffold_471-1510915933:276536..278448 | Clytia hemisphaerica | exon |
| TCONS_00067616-exon-scaffold_471-1575043694:276536..278448 | TCONS_00067616-exon-scaffold_471-1575043694:276536..278448 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_471 | supercontig | scaffold_471:276536..278448 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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