TCONS_00067615 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067615
Unique NameTCONS_00067615
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067615 ID=TCONS_00067615|Name=TCONS_00067615|organism=Clytia hemisphaerica|type=transcript|length=402bp
TGAAACTAAACATCAATGATAGCTTCAAAGAAAAAGACCACCCGCGTCTA
GGACGAATGCGTGTTACCAAGTACAATGGTCCAAATAATTCGAAATTACG
TGACAGCACCTTAGCAATAGAAGGTACAAAGCTGTGCAATGCAATGCCAA
AGTGCATCAGAAACTTGAAAAATGTTCCAGTTGATAAATTCAAAACTGCA
CTGGATAATCACCTCAAAACAATTCCCGATGAACCCCAAATCCATAGTTA
TACAGGGTGCAGGAGAGTTGACTCAAACTcaattttagacatgaaatcTC
TCTGCTGATCCATTTTTCCTTCAGGAATTGTGTATTGAACGAAGATTGTG
GTGTGGATCAAAAGATTCTTGCCAGAGCTATAGGCTCGAAGACAACcaaa
ag
Run BLAST on NCBI

protein sequence of TCONS_00067615-protein

>TCONS_00067615-protein ID=TCONS_00067615-protein|Name=TCONS_00067615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
KLNINDSFKEKDHPRLGRMRVTKYNGPNNSKLRDSTLAIEGTKLCNAMPK
CIRNLKNVPVDKFKTALDNHLKTIPDEPQIHSYTGCRRVDSNSILDMKSL
C
Run BLAST on NCBI

transcript from alignment at scaffold_471:268881..269282

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067615 ID=TCONS_00067615|Name=TCONS_00067615|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at scaffold_471:268881..269282 (Clytia hemisphaerica)
cttttgGTTGTCTTCGAGCCTATAGCTCTGGCAAGAATCTTTTGATCCAC
ACCACAATCTTCGTTCAATACACAATTCCTGAAGGAAAAATGGATCAGCA
GAGAgatttcatgtctaaaattgAGTTTGAGTCAACTCTCCTGCACCCTG
TATAACTATGGATTTGGGGTTCATCGGGAATTGTTTTGAGGTGATTATCC
AGTGCAGTTTTGAATTTATCAACTGGAACATTTTTCAAGTTTCTGATGCA
CTTTGGCATTGCATTGCACAGCTTTGTACCTTCTATTGCTAAGGTGCTGT
CACGTAATTTCGAATTATTTGGACCATTGTACTTGGTAACACGCATTCGT
CCTAGACGCGGGTGGTCTTTTTCTTTGAAGCTATCATTGATGTTTAGTTT
CA

Coding sequence (CDS) from alignment at scaffold_471:268881..269282

>TCONS_00067615 ID=TCONS_00067615|Name=TCONS_00067615|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_471:268881..269282 (Clytia hemisphaerica)
TCAGCAGAGAgatttcatgtctaaaattgAGTTTGAGTCAACTCTCCTGC
ACCCTGTATAACTATGGATTTGGGGTTCATCGGGAATTGTTTTGAGGTGA
TTATCCAGTGCAGTTTTGAATTTATCAACTGGAACATTTTTCAAGTTTCT
GATGCACTTTGGCATTGCATTGCACAGCTTTGTACCTTCTATTGCTAAGG
TGCTGTCACGTAATTTCGAATTATTTGGACCATTGTACTTGGTAACACGC
ATTCGTCCTAGACGCGGGTGGTCTTTTTCTTTGAAGCTATCATTGATGTT
TAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042224XLOC_042224Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067615-proteinTCONS_00067615-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067615-exon-scaffold_471-1491911889:268881..269282TCONS_00067615-exon-scaffold_471-1491911889:268881..269282Clytia hemisphaericaexon
TCONS_00067615-exon-scaffold_471-1510915933:268881..269282TCONS_00067615-exon-scaffold_471-1510915933:268881..269282Clytia hemisphaericaexon
TCONS_00067615-exon-scaffold_471-1575043694:268881..269282TCONS_00067615-exon-scaffold_471-1575043694:268881..269282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_471supercontigscaffold_471:268881..269282 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28676	1.25479	3.7464	2.64714	0.743685	0.19589	0.945331	0.221252	1.85884	1.15124	2.04861	1.71395	1.46705	0	0.417522	1.47513	0.851926	0.282881	0.586222	0.20448	0.88865	0.520143	0.632302	0.383236	0.592086	0	1.00823	2.15202	0.612086	0.831492
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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