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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067612 ID=TCONS_00067612|Name=TCONS_00067612|organism=Clytia hemisphaerica|type=transcript|length=1853bp
AAAGACGGTCTCTTGAGGGCTATGAAATATGCCTCTAAATTCTTTATTCA
AAAATCTTATCTTAGAAAGCATCCTCAGGGATTCACCCAAGAAATGTGAA
CAAAATTTCAACTAgaccaatctttaaaaaattttcaaagtagtAAGTTT
AATTACATGATGGAAGATATCAATAAATATAGTATATGGTAATAAAAGAT
GCAAATACAACCATGAAAGTTGATTGGACGATGTTCCTCGCAGAACTTGA
CGGTTGTGGGAAGTCATCTCCTTGGTAACCGATACAATGCCAACAGTTAA
AACGATTTTCagaatcatatttctttttcaactcTTGCAATTTCTCCAAC
TGTTCTCCCCATAAAGAATTTCGCCAATCAGGTTCTTTAGCCCAAGCATG
GTTGAATCCAGCTCCGGTGTCTTTGATATTTTCTCGCAGATAATTTGCCA
TTTTGTCATTGAAGGTTTCCATTTGCCAAACAGCTTTTCTCATTGCAGGA
TGGACAGCAGTTTCGTCTTTGCTAGGATCCATCACTACACCTCCTAAGAG
ATaattgaaagtgaaaaatcCGTTCCTCACCATCCATTTCAAATGATCCA
AAGCTTTCTCAGGTTCGTTCACCACAAAATCACGAGGAATCAAACGACTT
GCGATATCGATCGTACCTTGTCCAGTTTTATCGGTTGTCATTTCATCACC
TCCACGGACATTGAAATAGCTGTCAGCGATCTTAGTGTTCGTCACCACAG
CTAGTTTCTCAAGGTCTGGCAAACTGTCTCtccattcattgaaatcattg
atGAAAGTAGTTTTAGCATCTTCTTCAGAACCgataaaatacaaaataag
tGTGTTCAATGTCCAATAACCTCCCCAACGATTGTCCAGCTTTGGTGAAA
GTTTCACCCATTGTTCCAACCAGGAGTCTACAGTCCCTGTGTAATACCAA
GGGGGTCCaatatttttaatttccatGTAAAATTCAAGAATAGGCTCGGC
TGGTCGAATTTTGTAGTGAACTGCAGTAACAACACCCCAAGTACCACCAC
CTCCGCCTCGTAGCGCCCAAAACAAATCTGGATTAGAACATTTATCTGCA
GTAACATGGCTTCCATCTGCAAGAACAACATCAAAGTCAATAACATTATC
AATGCCTATTCCATATTTGCGAGACATGGCAGATAAACCACATCCTTGAA
GCCAGCCACCTGCTGCAGATACTGTCAATCCACCACCTCCAACAATATGG
TATTTTGAATTCAAGGCTTTGTACACACTATTCCATCTTTGACCCCCACC
AACTTTGACAGCATGAGTGAAAACGGTTCCACAAGAATCAGTGAAGTTTT
GTTTGACATCGTCCACGCTTTTCAAGTGTTCAGGGAGATTGCGCGTCCAA
atcaacaaagtagacttccCCATACTCGAGCCAGCATACGAATGACCAGA
TGTTTTGATCGTAACAGCAATGTTATGTTTGTTGGCAAACGCAACGGCCA
GTTGAACATCTCTTACAGATTTGACCTCCACGCTGTAAGCCGGGATATTC
CAGGAAGTGTTGTTTTGACAGAATTGTCTTGAGCAATCATGATACTGCAT
GCAAATACCATTTCCAGTGGATGAGATGTTGAACGCATTGTCACCTTGTT
TCTGGCATTGTTCATAATCGTCTGATGAAAGTTGATGAAGTGTTCCATTt
aagttttcaccaaaactGTTCCATTCCCCTTGACTTGGCCAGCAAGTTGA
GTTGGATGAAGGCTCGCAATACTTTTTATTGGAGCACAAACCAATATGGA
AAATTCCACAAAACAGCAGCAGCTTCAAGACGAGCATTTTCACTACCCTT
TTA Run BLAST on NCBI protein sequence of TCONS_00067612-protein >TCONS_00067612-protein ID=TCONS_00067612-protein|Name=TCONS_00067612-protein|organism=Clytia hemisphaerica|type=polypeptide|length=560bp
KRVVKMLVLKLLLFCGIFHIGLCSNKKYCEPSSNSTCWPSQGEWNSFGEN
LNGTLHQLSSDDYEQCQKQGDNAFNISSTGNGICMQYHDCSRQFCQNNTS
WNIPAYSVEVKSVRDVQLAVAFANKHNIAVTIKTSGHSYAGSSMGKSTLL
IWTRNLPEHLKSVDDVKQNFTDSCGTVFTHAVKVGGGQRWNSVYKALNSK
YHIVGGGGLTVSAAGGWLQGCGLSAMSRKYGIGIDNVIDFDVVLADGSHV
TADKCSNPDLFWALRGGGGGTWGVVTAVHYKIRPAEPILEFYMEIKNIGP
PWYYTGTVDSWLEQWVKLSPKLDNRWGGYWTLNTLILYFIGSEEDAKTTF
INDFNEWRDSLPDLEKLAVVTNTKIADSYFNVRGGDEMTTDKTGQGTIDI
ASRLIPRDFVVNEPEKALDHLKWMVRNGFFTFNYLLGGVVMDPSKDETAV
HPAMRKAVWQMETFNDKMANYLRENIKDTGAGFNHAWAKEPDWRNSLWGE
QLEKLQELKKKYDSENRFNCWHCIGYQGDDFPQPSSSARNIVQSTFMVVF
ASFITIYYIY Run BLAST on NCBI transcript from alignment at scaffold_471:223251..225103 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067612 ID=TCONS_00067612|Name=TCONS_00067612|organism=Clytia hemisphaerica|type=transcript|length=1853bp|location=Sequence derived from alignment at scaffold_471:223251..225103 (Clytia hemisphaerica)
TAAAAGGGTAGTGAAAATGCTCGTCTTGAAGCTGCTGCTGTTTTGTGGAA
TTTTCCATATTGGTTTGTGCTCCAATAAAAAGTATTGCGAGCCTTCATCC
AACTCAACTTGCTGGCCAAGTCAAGGGGAATGGAACagttttggtgaaaa
cttaAATGGAACACTTCATCAACTTTCATCAGACGATTATGAACAATGCC
AGAAACAAGGTGACAATGCGTTCAACATCTCATCCACTGGAAATGGTATT
TGCATGCAGTATCATGATTGCTCAAGACAATTCTGTCAAAACAACACTTC
CTGGAATATCCCGGCTTACAGCGTGGAGGTCAAATCTGTAAGAGATGTTC
AACTGGCCGTTGCGTTTGCCAACAAACATAACATTGCTGTTACGATCAAA
ACATCTGGTCATTCGTATGCTGGCTCGAGTATGGggaagtctactttgtt
gatTTGGACGCGCAATCTCCCTGAACACTTGAAAAGCGTGGACGATGTCA
AACAAAACTTCACTGATTCTTGTGGAACCGTTTTCACTCATGCTGTCAAA
GTTGGTGGGGGTCAAAGATGGAATAGTGTGTACAAAGCCTTGAATTCAAA
ATACCATATTGTTGGAGGTGGTGGATTGACAGTATCTGCAGCAGGTGGCT
GGCTTCAAGGATGTGGTTTATCTGCCATGTCTCGCAAATATGGAATAGGC
ATTGATAATGTTATTGACTTTGATGTTGTTCTTGCAGATGGAAGCCATGT
TACTGCAGATAAATGTTCTAATCCAGATTTGTTTTGGGCGCTACGAGGCG
GAGGTGGTGGTACTTGGGGTGTTGTTACTGCAGTTCACTACAAAATTCGA
CCAGCCGAGCCTATTCTTGAATTTTACatggaaattaaaaatattGGACC
CCCTTGGTATTACACAGGGACTGTAGACTCCTGGTTGGAACAATGGGTGA
AACTTTCACCAAAGCTGGACAATCGTTGGGGAGGTTATTGGACATTGAAC
ACacttattttgtattttatcGGTTCTGAAGAAGATGCTAAAACTACTTT
CatcaatgatttcaatgaatggaGAGACAGTTTGCCAGACCTTGAGAAAC
TAGCTGTGGTGACGAACACTAAGATCGCTGACAGCTATTTCAATGTCCGT
GGAGGTGATGAAATGACAACCGATAAAACTGGACAAGGTACGATCGATAT
CGCAAGTCGTTTGATTCCTCGTGATTTTGTGGTGAACGAACCTGAGAAAG
CTTTGGATCATTTGAAATGGATGGTGAGGAACGgatttttcactttcaat
tATCTCTTAGGAGGTGTAGTGATGGATCCTAGCAAAGACGAAACTGCTGT
CCATCCTGCAATGAGAAAAGCTGTTTGGCAAATGGAAACCTTCAATGACA
AAATGGCAAATTATCTGCGAGAAAATATCAAAGACACCGGAGCTGGATTC
AACCATGCTTGGGCTAAAGAACCTGATTGGCGAAATTCTTTATGGGGAGA
ACAGTTGGAGAAATTGCAAgagttgaaaaagaaatatgattctGAAAATC
GTTTTAACTGTTGGCATTGTATCGGTTACCAAGGAGATGACTTCCCACAA
CCGTCAAGTTCTGCGAGGAACATCGTCCAATCAACTTTCATGGTTGTATT
TGCATCTTTTATTACCATATACTATATTTATTGATATCTTCCATCATGTA
ATTAAACTTactactttgaaaattttttaaagattggtcTAGTTGAAATT
TTGTTCACATTTCTTGGGTGAATCCCTGAGGATGCTTTCTAAGATAAGAT
TTTTGAATAAAGAATTTAGAGGCATATTTCATAGCCCTCAAGAGACCGTC
TTT Coding sequence (CDS) from alignment at scaffold_471:223251..225103 >TCONS_00067612 ID=TCONS_00067612|Name=TCONS_00067612|organism=Clytia hemisphaerica|type=CDS|length=1683bp|location=Sequence derived from alignment at scaffold_471:223251..225103 (Clytia hemisphaerica)
AAAAGGGTAGTGAAAATGCTCGTCTTGAAGCTGCTGCTGTTTTGTGGAAT
TTTCCATATTGGTTTGTGCTCCAATAAAAAGTATTGCGAGCCTTCATCCA
ACTCAACTTGCTGGCCAAGTCAAGGGGAATGGAACagttttggtgaaaac
ttaAATGGAACACTTCATCAACTTTCATCAGACGATTATGAACAATGCCA
GAAACAAGGTGACAATGCGTTCAACATCTCATCCACTGGAAATGGTATTT
GCATGCAGTATCATGATTGCTCAAGACAATTCTGTCAAAACAACACTTCC
TGGAATATCCCGGCTTACAGCGTGGAGGTCAAATCTGTAAGAGATGTTCA
ACTGGCCGTTGCGTTTGCCAACAAACATAACATTGCTGTTACGATCAAAA
CATCTGGTCATTCGTATGCTGGCTCGAGTATGGggaagtctactttgttg
atTTGGACGCGCAATCTCCCTGAACACTTGAAAAGCGTGGACGATGTCAA
ACAAAACTTCACTGATTCTTGTGGAACCGTTTTCACTCATGCTGTCAAAG
TTGGTGGGGGTCAAAGATGGAATAGTGTGTACAAAGCCTTGAATTCAAAA
TACCATATTGTTGGAGGTGGTGGATTGACAGTATCTGCAGCAGGTGGCTG
GCTTCAAGGATGTGGTTTATCTGCCATGTCTCGCAAATATGGAATAGGCA
TTGATAATGTTATTGACTTTGATGTTGTTCTTGCAGATGGAAGCCATGTT
ACTGCAGATAAATGTTCTAATCCAGATTTGTTTTGGGCGCTACGAGGCGG
AGGTGGTGGTACTTGGGGTGTTGTTACTGCAGTTCACTACAAAATTCGAC
CAGCCGAGCCTATTCTTGAATTTTACatggaaattaaaaatattGGACCC
CCTTGGTATTACACAGGGACTGTAGACTCCTGGTTGGAACAATGGGTGAA
ACTTTCACCAAAGCTGGACAATCGTTGGGGAGGTTATTGGACATTGAACA
CacttattttgtattttatcGGTTCTGAAGAAGATGCTAAAACTACTTTC
atcaatgatttcaatgaatggaGAGACAGTTTGCCAGACCTTGAGAAACT
AGCTGTGGTGACGAACACTAAGATCGCTGACAGCTATTTCAATGTCCGTG
GAGGTGATGAAATGACAACCGATAAAACTGGACAAGGTACGATCGATATC
GCAAGTCGTTTGATTCCTCGTGATTTTGTGGTGAACGAACCTGAGAAAGC
TTTGGATCATTTGAAATGGATGGTGAGGAACGgatttttcactttcaatt
ATCTCTTAGGAGGTGTAGTGATGGATCCTAGCAAAGACGAAACTGCTGTC
CATCCTGCAATGAGAAAAGCTGTTTGGCAAATGGAAACCTTCAATGACAA
AATGGCAAATTATCTGCGAGAAAATATCAAAGACACCGGAGCTGGATTCA
ACCATGCTTGGGCTAAAGAACCTGATTGGCGAAATTCTTTATGGGGAGAA
CAGTTGGAGAAATTGCAAgagttgaaaaagaaatatgattctGAAAATCG
TTTTAACTGTTGGCATTGTATCGGTTACCAAGGAGATGACTTCCCACAAC
CGTCAAGTTCTGCGAGGAACATCGTCCAATCAACTTTCATGGTTGTATTT
GCATCTTTTATTACCATATACTATATTTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067612-exon-scaffold_471-1491911889:223251..225103 | TCONS_00067612-exon-scaffold_471-1491911889:223251..225103 | Clytia hemisphaerica | exon |
| TCONS_00067612-exon-scaffold_471-1510915933:223251..225103 | TCONS_00067612-exon-scaffold_471-1510915933:223251..225103 | Clytia hemisphaerica | exon |
| TCONS_00067612-exon-scaffold_471-1575043694:223251..225103 | TCONS_00067612-exon-scaffold_471-1575043694:223251..225103 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_471 | supercontig | scaffold_471:223251..225103 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0016491 | oxidoreductase activity |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0050660 |
flavin adenine dinucleotide binding |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0016614 |
oxidoreductase activity, acting on CH-OH group of donors |
Blast
The following BLAST results are available for this feature:
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