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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067607 ID=TCONS_00067607|Name=TCONS_00067607|organism=Clytia hemisphaerica|type=transcript|length=1857bp
GTGAGCGACAAAAGTGAAAGTTAGAAAGTATTTGAAGCCGTCAGAgaatt
taaatttgtttttctgaATTCTAAAGAGGTTGTAAAGAtttattttacat
attttcagtTGTACTTAAGTCATGGAGCAAAAGTTAGCTGAATATCGTGC
AAGAAAAGCAAGAGAATTTAAAGGAGaaatcgaaagagaaaacaataaaa
gtgatgatgaagaaaatgaaaatgaacatGCAAGCCAAGATGCTCATATT
TGGTCAAATGGCAGTGGCTCCAATGGAAGATATCAATTAGGAAGGATTGG
GAAATTTTTCCAGAGGCTCTATAGTATTAATGGAATATTGAAATTTGCAT
TTTGGTTCAGTTTGTGGATGTTTTTCATAAAGATTGAATTTGGGGCTGTG
TTCTTTGCACTTTCTATGATTGTCATGTTATATTTCAGTATGTCTTATGA
TTCTAGGGGTGAAGATGAAATGAGTGCCTATTCTGTTTTTAATAAGGACT
TACAAAGACTAGATGGTACATTTACTGCTGAACAGTTTGACAAAAGTCTT
CGTAAAGGAGGTGGATTACATTGAAACTATatacaatatatttttattcA
GAATATTTTTAATGATTGTTTTAAATTACTTCTTAGACAAGCTATTTATC
TTTCTGTGTCTTTTTTATATCTTCTTACCTAGATTGAAGTCTAAAGATGA
AAAATGTAAGTTTATTGTAATTTGtaaggaaaaatgaaattaatgaagcc
aaaaaaagagaaaaatgaagacacaatttttggccattttataTGTTTTA
CTTTGGTGTAACTTTTAGTTTGATTTTAGACTTTTTGGGAAGATATGAAC
AGTGTAGGTGGAACTTCGATATTCTTttgttagaaaaagctatacctgtt
tcttttctctttacagaatcaacaagccatcaacatcatcGACAAATTCC
ACACACAGTCTAGGAAATCCTCGCGCGCTTACgacctcggaacataagcg
tgcaattgagaggatttcccagactgacaCATTTCTTCATTAGGAACTTT
TagattatctgccattatgactttcttgttGAAGCTGTTCTGAAATTAGC
TAATCAGGTTATGTTTATGTTTAgctatatatttaaatttgcactACAAA
ATACTTAAATAATTAATGATGATATTcaaaatatactatttgtattcTCA
GAAGATAAACACATTACAAAATGTGATAGTTTATTATTGTAACCCCTTAT
TTGGATCATTCTATCTATAAGGCAGATACTAATTAGCTCCCTGGGCACAA
GATCGCCGTCTTATCATTATTTGCCCGTCCGAGAATGCTagctaataatt
tttttctcctgcACTCAAggggaaaatgaaagtgatcgatattcttagAA
GGAAGAACGCCAGAAAAAAATCTGTtgacaaaaagatgtattttgtggTT
GAGAATCTAttctgtgaagatgaaaaacttTTGGCAATTTTTCACTGAAT
GCTGAAAAACTCCAATTGCAATCTCCCTTAAGGTTGGAGGATTTGGGTTA
gcaaggcaaaaatcgctaaaaaacttGTAAGATCGTAATCCTGGAATGTT
GAAGTTTCACCTACATTGATGAAAATTATGAATAAGTTATTTATAAGATA
TTGGTCTAATAgaaaaatgctcatttattgctctcttttttcaacttcat
tcttcattttcaaattctttgataAGACTTTTCAAAGCTAGCCACTTAAG
AACATACTTCAGACAACTTATTACTCTTATTACACTTATATTTTTCTTAC
AAGACACATGCTTTTAAAATTGGTCACAATAATAATAGTTTTATACATTA
GGTAAAC Run BLAST on NCBI protein sequence of TCONS_00067607-protein >TCONS_00067607-protein ID=TCONS_00067607-protein|Name=TCONS_00067607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MEQKLAEYRARKAREFKGEIERENNKSDDEENENEHASQDAHIWSNGSGS
NGRYQLGRIGKFFQRLYSINGILKFAFWFSLWMFFIKIEFGAVFFALSMI
VMLYFSMSYDSRGEDEMSAYSVFNKDLQRLDGTFTAEQFDKSLRKGGGLH Run BLAST on NCBI transcript from alignment at scaffold_471:71711..73567 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067607 ID=TCONS_00067607|Name=TCONS_00067607|organism=Clytia hemisphaerica|type=transcript|length=1857bp|location=Sequence derived from alignment at scaffold_471:71711..73567 (Clytia hemisphaerica)
GTTTACCTAATGTATAAAACTATTATTATTGTGACCAATTTTAAAAGCAT
GTGTCTTGTAAGAAAAATATAAGTGTAATAAGAGTAATAAGTTGTCTGAA
GTATGTTCTTAAGTGGCTAGCTTTGAAAAGTCTtatcaaagaatttgaaa
atgaagaatgaagttgaaaaaagagagcaataaatgagcatttttcTATT
AGACCAATATCTTATAAATAACTTATTCATAATTTTCATCAATGTAGGTG
AAACTTCAACATTCCAGGATTACGATCTTACaagttttttagcgattttt
gccttgcTAACCCAAATCCTCCAACCTTAAGGGAGATTGCAATTGGAGTT
TTTCAGCATTCAGTGAAAAATTGCCAAaagtttttcatcttcacagaaTA
GATTCTCAAccacaaaatacatctttttgtcaACAGATTTTTTTCTGGCG
TTCTTCCTTctaagaatatcgatcactttcattttccccTTGAGTgcagg
agaaaaaaattattagctAGCATTCTCGGACGGGCAAATAATGATAAGAC
GGCGATCTTGTGCCCAGGGAGCTAATTAGTATCTGCCTTATAGATAGAAT
GATCCAAATAAGGGGTTACAATAATAAACTATCACATTTTGTAATGTGTT
TATCTTCTGAgaatacaaatagtatattttgAATATCATCATTAATTATT
TAAGTATTTTGTagtgcaaatttaaatatatagcTAAACATAAACATAAC
CTGATTAGCTAATTTCAGAACAGCTTCaacaagaaagtcataatggcaga
taatctAAAAGTTCCTAATGAAGAAATGtgtcagtctgggaaatcctctc
aattgcacgcttatgttccgaggtcGTAAGCGCGCGAGGATTTCCTAGAC
TGTGTGTGGAATTTGTCgatgatgttgatggcttgttgattctgtaaaga
gaaaagaaacaggtatagctttttctaacaaAAGAATATCGAAGTTCCAC
CTACACTGTTCATATCTTCCCAAAAAGTCTAAAATCAAACTAAAAGTTAC
ACCAAAGTAAAACAtataaaatggccaaaaattgtgtcttcatttttctc
tttttttggcttcattaatttcatttttccttaCAAATTACAATAAACTT
ACATTTTTCATCTTTAGACTTCAATCTAGGTAAGAAGATATAAAAAAGAC
ACAGAAAGATAAATAGCTTGTCTAAGAAGTAATTTAAAACAATCATTAAA
AATATTCTgaataaaaatatattgtatATAGTTTCAATGTAATCCACCTC
CTTTACGAAGACTTTTGTCAAACTGTTCAGCAGTAAATGTACCATCTAGT
CTTTGTAAGTCCTTATTAAAAACAGAATAGGCACTCATTTCATCTTCACC
CCTAGAATCATAAGACATACTGAAATATAACATGACAATCATAGAAAGTG
CAAAGAACACAGCCCCAAATTCAATCTTTATGAAAAACATCCACAAACTG
AACCAAAATGCAAATTTCAATATTCCATTAATACTATAGAGCCTCTGGAA
AAATTTCCCAATCCTTCCTAATTGATATCTTCCATTGGAGCCACTGCCAT
TTGACCAAATATGAGCATCTTGGCTTGCatgttcattttcattttcttca
tcatcacttttattgttttctctttcgatttCTCCTTTAAATTCTCTTGC
TTTTCTTGCACGATATTCAGCTAACTTTTGCTCCATGACTTAAGTACAac
tgaaaatatgtaaaataaaTCTTTACAACCTCTTTAGAATtcagaaaaac
aaatttaaattcTCTGACGGCTTCAAATACTTTCTAACTTTCACTTTTGT
CGCTCAC Coding sequence (CDS) from alignment at scaffold_471:71711..73567 >TCONS_00067607 ID=TCONS_00067607|Name=TCONS_00067607|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_471:71711..73567 (Clytia hemisphaerica)
TCAATGTAATCCACCTCCTTTACGAAGACTTTTGTCAAACTGTTCAGCAG
TAAATGTACCATCTAGTCTTTGTAAGTCCTTATTAAAAACAGAATAGGCA
CTCATTTCATCTTCACCCCTAGAATCATAAGACATACTGAAATATAACAT
GACAATCATAGAAAGTGCAAAGAACACAGCCCCAAATTCAATCTTTATGA
AAAACATCCACAAACTGAACCAAAATGCAAATTTCAATATTCCATTAATA
CTATAGAGCCTCTGGAAAAATTTCCCAATCCTTCCTAATTGATATCTTCC
ATTGGAGCCACTGCCATTTGACCAAATATGAGCATCTTGGCTTGCatgtt
cattttcattttcttcatcatcacttttattgttttctctttcgatttCT
CCTTTAAATTCTCTTGCTTTTCTTGCACGATATTCAGCTAACTTTTGCTC
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067607-exon-scaffold_471-1491911889:71711..73567 | TCONS_00067607-exon-scaffold_471-1491911889:71711..73567 | Clytia hemisphaerica | exon |
| TCONS_00067607-exon-scaffold_471-1510915933:71711..73567 | TCONS_00067607-exon-scaffold_471-1510915933:71711..73567 | Clytia hemisphaerica | exon |
| TCONS_00067607-exon-scaffold_471-1575043694:71711..73567 | TCONS_00067607-exon-scaffold_471-1575043694:71711..73567 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_471 | supercontig | scaffold_471:71711..73567 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019387 | Uncharacterised_SAYSvFN |
Blast
The following BLAST results are available for this feature:
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