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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067606 ID=TCONS_00067606|Name=TCONS_00067606|organism=Clytia hemisphaerica|type=transcript|length=1611bp
GGcgagattaaaaatttgaaaataaatctaaGAACAAGCAAAGAACAATC
AGGTTTAAAGTTAGGAGGTAttgtttttttgtattaaatgTAGAAACGAA
GCATATTTAGAAtttcttaagaacatttttaaacaaTCATCACTACTCTT
CTGAAAGTGCAAAAATTTGTTTCCACTTCTTCATTTGGCTATATAGATAA
TGGCTATACAAAGTAtttacaaaattataaaaatttcctaaaaatttgaT
TTGGTTCAATTTTCCAGTAATTTTTCCTGCAGAAACTGCAGTCATTGTCT
CtcttgagaaattctttttcaatataAGGTATCAGTAAAGGGTGCAGTCG
CCCAAACACTCTCATTACCAAACTTCTTGTGGAAACCAAGAGTGTTTCTT
ATAGAGATACAGTGTTCGTGGTGTAAGTGCAATAAAGAGCAAGGATTACT
CACTTTATAACCCAGTTTATTTCGTAGCACCCAAATAACAACATTCTCCA
TTCCACGGATGTTATATAAGTGTTTTTCTAATGATATGAATTGCGTTTTG
TGGATCCGTTCTTTGACATGGAGAACGAATCCATCATGCGCGTTACCGTA
TTCCTTCATACAAATCCCGAGTGAAGGATTCCCTATGCATTCTGGATTCA
ACAGCGAGTGGTGACGCGTAAGAGCGTACGCGTGGCGATGTGTTTTGAGG
TATTCGTAGTCTAGATTCTGCCAACCGTCTCCAAAGATGATATCTTGATT
GACAATAGCTACCGTTTGACCTTGAAAGCATTTGGTGGTATGGTCGAAAG
CGTCAGGTGTTGATAGCTCCTTGTTGATGTTCTGTATTAGAAGTTTATGG
CTGTTATCCAAATCTAAAGTCAATACGTATTCGGCCACTGATCTTGATTC
GGTGAGCAGAACAATAGTTTTTATTTGTGGGTGGTTTAAATTCCTTTGTA
AAGTGTTCAAAAGTTCCATCCACCGCAAGTTAACGTCGGCCATGCGTGGT
ACGGTCCTCTTTAACTTTAATGATCTTAAATGGTCTTTTAACGAGATGAG
ATGTGTTAATAGAACTATTTTATCGGAATCCTCACAAATCGGGACACAGT
GTAGAGAATCTCTGAACCGTGCTTTGTTTCGTTGTCCCGTCGGTAGCGTT
TCAATCAACTCGAACTGTAAGAAATTGCCATGGTTACCATCtttttcgat
tctttttatacGCATGCGTGGTTGATCATCAGCCACCTGACATCTGTGCT
CTAAATCTGAATTGGTCCCTTCGTAAAAGTTTTGTTGTTCTTCAAGCATT
TTGTCATAATTTGAAGGACCTGCGGTGAAGGACCAATACATGCATAGTGA
CCAAGTCGTAAAAAATGTCAGGCCTTTGATGAGAATATTGATACCCATGA
CTTTTACAATATTGATGTTGATGTTGacatttccttaaattttatgaTCT
GAAACAACAATAAATTAAAGATAAAATACTTTGAGTCGTAGCTGTTGATC
TTTTTTAACATGTTGTTACTTTTTACTGTCATGCGGCAGCTTTTTTCTAC
ATGGCTATATAATACATGCaatatttgttcatttttttctaaacggTCAT
AGTCCGTGTTT Run BLAST on NCBI protein sequence of TCONS_00067606-protein >TCONS_00067606-protein ID=TCONS_00067606-protein|Name=TCONS_00067606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MGINILIKGLTFFTTWSLCMYWSFTAGPSNYDKMLEEQQNFYEGTNSDLE
HRCQVADDQPRMRIKRIEKDGNHGNFLQFELIETLPTGQRNKARFRDSLH
CVPICEDSDKIVLLTHLISLKDHLRSLKLKRTVPRMADVNLRWMELLNTL
QRNLNHPQIKTIVLLTESRSVAEYVLTLDLDNSHKLLIQNINKELSTPDA
FDHTTKCFQGQTVAIVNQDIIFGDGWQNLDYEYLKTHRHAYALTRHHSLL
NPECIGNPSLGICMKEYGNAHDGFVLHVKERIHKTQFISLEKHLYNIRGM
ENVVIWVLRNKLGYKVSNPCSLLHLHHEHCISIRNTLGFHKKFGNESVWA
TAPFTDTLY Run BLAST on NCBI transcript from alignment at scaffold_471:61523..63133 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067606 ID=TCONS_00067606|Name=TCONS_00067606|organism=Clytia hemisphaerica|type=transcript|length=1611bp|location=Sequence derived from alignment at scaffold_471:61523..63133 (Clytia hemisphaerica)
AAACACGGACTATGAccgtttagaaaaaaatgaacaaatattGCATGTAT
TATATAGCCATGTAGAAAAAAGCTGCCGCATGACAGTAAAAAGTAACAAC
ATGTTAAAAAAGATCAACAGCTACGACTCAAAGTATTTTATCTTTAATTT
ATTGTTGTTTCAGAtcataaaatttaaggaaatgtCAACATCAACATCAA
TATTGTAAAAGTCATGGGTATCAATATTCTCATCAAAGGCCTGACATTTT
TTACGACTTGGTCACTATGCATGTATTGGTCCTTCACCGCAGGTCCTTCA
AATTATGACAAAATGCTTGAAGAACAACAAAACTTTTACGAAGGGACCAA
TTCAGATTTAGAGCACAGATGTCAGGTGGCTGATGATCAACCACGCATGC
gtataaaaagaatcgaaaaaGATGGTAACCATGGCAATTTCTTACAGTTC
GAGTTGATTGAAACGCTACCGACGGGACAACGAAACAAAGCACGGTTCAG
AGATTCTCTACACTGTGTCCCGATTTGTGAGGATTCCGATAAAATAGTTC
TATTAACACATCTCATCTCGTTAAAAGACCATTTAAGATCATTAAAGTTA
AAGAGGACCGTACCACGCATGGCCGACGTTAACTTGCGGTGGATGGAACT
TTTGAACACTTTACAAAGGAATTTAAACCACCCACAAATAAAAACTATTG
TTCTGCTCACCGAATCAAGATCAGTGGCCGAATACGTATTGACTTTAGAT
TTGGATAACAGCCATAAACTTCTAATACAGAACATCAACAAGGAGCTATC
AACACCTGACGCTTTCGACCATACCACCAAATGCTTTCAAGGTCAAACGG
TAGCTATTGTCAATCAAGATATCATCTTTGGAGACGGTTGGCAGAATCTA
GACTACGAATACCTCAAAACACATCGCCACGCGTACGCTCTTACGCGTCA
CCACTCGCTGTTGAATCCAGAATGCATAGGGAATCCTTCACTCGGGATTT
GTATGAAGGAATACGGTAACGCGCATGATGGATTCGTTCTCCATGTCAAA
GAACGGATCCACAAAACGCAATTCATATCATTAGAAAAACACTTATATAA
CATCCGTGGAATGGAGAATGTTGTTATTTGGGTGCTACGAAATAAACTGG
GTTATAAAGTGAGTAATCCTTGCTCTTTATTGCACTTACACCACGAACAC
TGTATCTCTATAAGAAACACTCTTGGTTTCCACAAGAAGTTTGGTAATGA
GAGTGTTTGGGCGACTGCACCCTTTACTGATACCTtatattgaaaaagaa
tttctcaagaGAGACAATGACTGCAGTTTCTGCAGGAAAAATTACTGGAA
AATTGAACCAAAtcaaatttttaggaaatttttataattttgtaaaTACT
TTGTATAGCCATTATCTATATAGCCAAATGAAGAAGTGGAAACAAATTTT
TGCACTTTCAGAAGAGTAGTGATGAttgtttaaaaatgttcttaagaaaT
TCTAAATATGCTTCGTTTCTAcatttaatacaaaaaaacaaTACCTCCTA
ACTTTAAACCTGATTGTTCTTTGCTTGTTCttagatttattttcaaattt
ttaatctcgCC Coding sequence (CDS) from alignment at scaffold_471:61523..63133 >TCONS_00067606 ID=TCONS_00067606|Name=TCONS_00067606|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_471:61523..63133 (Clytia hemisphaerica)
ATGGGTATCAATATTCTCATCAAAGGCCTGACATTTTTTACGACTTGGTC
ACTATGCATGTATTGGTCCTTCACCGCAGGTCCTTCAAATTATGACAAAA
TGCTTGAAGAACAACAAAACTTTTACGAAGGGACCAATTCAGATTTAGAG
CACAGATGTCAGGTGGCTGATGATCAACCACGCATGCgtataaaaagaat
cgaaaaaGATGGTAACCATGGCAATTTCTTACAGTTCGAGTTGATTGAAA
CGCTACCGACGGGACAACGAAACAAAGCACGGTTCAGAGATTCTCTACAC
TGTGTCCCGATTTGTGAGGATTCCGATAAAATAGTTCTATTAACACATCT
CATCTCGTTAAAAGACCATTTAAGATCATTAAAGTTAAAGAGGACCGTAC
CACGCATGGCCGACGTTAACTTGCGGTGGATGGAACTTTTGAACACTTTA
CAAAGGAATTTAAACCACCCACAAATAAAAACTATTGTTCTGCTCACCGA
ATCAAGATCAGTGGCCGAATACGTATTGACTTTAGATTTGGATAACAGCC
ATAAACTTCTAATACAGAACATCAACAAGGAGCTATCAACACCTGACGCT
TTCGACCATACCACCAAATGCTTTCAAGGTCAAACGGTAGCTATTGTCAA
TCAAGATATCATCTTTGGAGACGGTTGGCAGAATCTAGACTACGAATACC
TCAAAACACATCGCCACGCGTACGCTCTTACGCGTCACCACTCGCTGTTG
AATCCAGAATGCATAGGGAATCCTTCACTCGGGATTTGTATGAAGGAATA
CGGTAACGCGCATGATGGATTCGTTCTCCATGTCAAAGAACGGATCCACA
AAACGCAATTCATATCATTAGAAAAACACTTATATAACATCCGTGGAATG
GAGAATGTTGTTATTTGGGTGCTACGAAATAAACTGGGTTATAAAGTGAG
TAATCCTTGCTCTTTATTGCACTTACACCACGAACACTGTATCTCTATAA
GAAACACTCTTGGTTTCCACAAGAAGTTTGGTAATGAGAGTGTTTGGGCG
ACTGCACCCTTTACTGATACCTtatattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067606-exon-scaffold_471-1491911889:61523..63133 | TCONS_00067606-exon-scaffold_471-1491911889:61523..63133 | Clytia hemisphaerica | exon |
| TCONS_00067606-exon-scaffold_471-1510915933:61523..63133 | TCONS_00067606-exon-scaffold_471-1510915933:61523..63133 | Clytia hemisphaerica | exon |
| TCONS_00067606-exon-scaffold_471-1575043694:61523..63133 | TCONS_00067606-exon-scaffold_471-1575043694:61523..63133 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_471 | supercontig | scaffold_471:61523..63133 . |
Blast
The following BLAST results are available for this feature:
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