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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067591 ID=TCONS_00067591|Name=TCONS_00067591|organism=Clytia hemisphaerica|type=transcript|length=1810bp
attttttcgttaaattcgAGATTTTTTGAActcacgaaagtttctgctca
caaaagtttgtacgcctaaagtagtatattaaaatataatatcataaaaa
ctgaaacttttttatattGGAATATTTCACAAATTATACATGGCAACTAA
GTCTTTGATGGCAATGAATAAATCtaaacaatttcaaaatcaagTCAAAC
ACGTTGAATTTCATGTTGTTTTGATTCGGGTCCACCACAAGCCGAAACAA
CAAAGTACAGTAAAGGATACAAAAAACACTGTTACTACAATCGGAGTCAA
TGCAAAACTCAGGCTAATCAAAATCGGGATCAAAACCAAGGATACAAAAA
ACACTGTCACTACAATCGGAGTCAATGCAAAACTCAGGCTAATCAAAATC
GGGATCAAAACCAAGGCTAATAAAGATATAAAATTGAACATCCCAGTTGC
AGTGCAACGAACTGAAGCATGGTAAAATTCGTTGGTGAAAATACAAAGTA
CTTGAAAGAAACTAGCACTTGTTGCCATAGTTATTAAAACCAGAGCTGTA
TGAATGGTCGCTACACTGCAAATATTCATAGCAATAAATCCCGCCGAATT
GATGAGTAACAAGCATATAAAAGCAAATCTTCGACTGACAtgattgataa
aaataaaagtgattGCGAGACCAATTGATTCTGCAAGAGAGCCAATAAAT
GAAACGTAAAAGACATCTGAACTGTGTTTGCAGTTGAGTACTTCTTTGAA
TGACAAGCTTTGTAGAATATCTACTTGGTTTTCTGGACATGTTGTCTTGT
TAAACACTATAGTGTTGTAATGAAGCACAGTCGAAACACTCATGGATAAA
CGACTCGTTGCCCATAGCAACATAACGATCAAAGTTCCACAAATTGTAGA
TTTTGAAAACAAGGTCGGGAGATTGCCTCTATTTTTGATGGTTCTCGCTG
TTAATAAAGTTCTTCGTTTTAAATTCTTTCCATGACTTTCTGCTAAATGC
TGGAACACTCTGTATAGTTCGTCTTCATTTCCGGTCATTTGTAAATACGG
TATAGATTCGGGTAGCCAAAACGgtataacaataaaaacaatcaacgGTG
CACTTGCTGTAAGGGTGAAATGACGCCAGCCCAGTCTCTGAGTATAGGCT
AGATACGAATAAACAACTGAACCAAGGCTAGATGATAATCCTAAAACGGT
TTGTATTCTAGCTCGGTGTTTGACAGGGAACGATTCTGCAGAATAGTTTG
ATATGATTCTTCCGCCACTCAAGCCAGACGctgtgaaaaataaaattaat
aaagCATCGAAATGACTTTCAGAAGCACATAAAAGTAGTGTGAAATATAA
ACTGAGTGTGGTCGTAACTGCAATCATTAATTTACGCCCGTACCGATCCG
CCAACCAGCCAAAGTAAAACGATCCAAGGGCCAAACCAATACATAAAGTT
GCCCATACGAGTTGCGGTTCATCCGCCCGATCGCCCGGTTCACACGCCCA
ATTGATTAAGATAACGTTGGCAAGAATGTTAGTAAGAGCTCCGTATGCGA
AACAAACGCAACTCAAAAGAATGACCATTTTGATGGTGTGTTTACCGAAG
CCGTAGTAATCGATCAATTCCTCGATCGGAATTGGAACATGTTTATCTTT
TCGTCGGATGGTGACTTTGTTGTCAACCATTTTGGATTGTTGTTGTTTCA
TTGCGTTTTGATTTTGCACTTTTGCTTTGGGCTGAAATCAATATGATACA
TTTGTATTCAGTGATTGAacctgtgaaatataaaaagagtaaatcaattt
tcaaactttc Run BLAST on NCBI transcript from alignment at scaffold_471:46591..48870- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067591 ID=TCONS_00067591|Name=TCONS_00067591|organism=Clytia hemisphaerica|type=transcript|length=2280bp|location=Sequence derived from alignment at scaffold_471:46591..48870- (Clytia hemisphaerica)
ATTTTTTCGTTAAATTCGAGATTTTTTGAACTCACGAAAGTTTCTGCTCA
CAAAAGTTTGTACGCCTAAAGTAGTATATTAAAATATAATATCATAAAAA
CTGAAACTTTTTTATATTGGAATATTTCACAAATTATACATGGCAACTAA
GTCTTTGATGGCAATGAATAAATCTAAACAATTTCAAAATCAAGTCAAAC
ACGTTGAATTTCATGTTGTTTTGATTCGGGTCCACCACAAGCCGAAACAA
CAAAGTACAGTAAAGGATACAAAAAACACTGTTACTACAATCGGAGTCAA
TGCAAAACTCAGGCTAATCAAAATCGGGATCAAAACCAAGGCTAATAAAG
ATATAAAATTGAACATCCCAGTTGCAGTGCAACGAACTGAAGCATGGTAA
AATTCGTTGGTGAAAATACAAAGTACTTGAAAGAAACTAGCACTTGTTGC
CATAGTTATTAAAACCAGAGCTGTATGAATGGTCGCTACACTGCAAATAT
TCATAGCAATAAATCCCGCCGAATTGATGAGTAACAAGCATATAAAAGCA
AATCTTCGACTGACATGATTGATAAAAATAAAAGTGATTGCGAGACCAAT
TGATTCTGCAAGAGAGCCAATAAATGAAACGTAAAAGACATCTGAACTGT
GTTTGCAGTTGAGTACTTCTTTGAATGACAAGCTTTGTAGAATATCTACT
TGGTTTTCTGGACATGTTGTCTTGTTAAACACTATAGTGTTGTAATGAAG
CACAGTCGAAACACTCATGGATAAACGACTCGTTGCCCATAGCAACATAA
CGATCNAAAGGATACAAAAAACACTGTCACTACAATCGGAGTCAATGCAA
AACTCAGGCTAATCAAAATCGGGATCAAAACCAAGGCTAATAAAGATATA
AAATTGAACATCCCAGTTGCAGTGCAACGAACTGAAGCATGGTAAAATTC
GTTGGTGAAAATACAAAGTACTTGAAAGAAACTAGCACTTGTTGCCATAG
TTATTAAAACCAGAGCTGTATGAATGGTCGCTACACTGCAAATATTCATA
GCAATAAATCCCGCCGAATTGATGAGTAACAAGCATATAAAAGCAAATCT
TCGACTGACATGATTGATAAAAATAAAAGTGATTGCGAGACCAATTGATT
CTGCAAGAGAGCCAATAAATGAAACGTAAAAGACATCTGAACTGTGTTTG
CAGTTGAGTACTTCTTTGAATGACAAGCTTTGTAGAATATCTACTTGGTT
TTCTGGACATGTTGTCTTGTTAAACACTATAGTGTTGTAATGAAGCACAG
TCGAAACACTCATGGATAAACGACTCGTTGCCCATAGCAACATAACGATC
AAAGTTCCACAAATTGTAGATTTTGAAAACAAGGTCGGGAGATTGCCTCT
ATTTTTGATGGTTCTCGCTGTTAATAAAGTTCTTCGTTTTAAATTCTTTC
CATGACTTTCTGCTAAATGCTGGAACACTCTGTATAGTTCGTCTTCATTT
CCGGTCATTTGTAAATACGGTATAGATTCGGGTAGCCAAAACGGTATAAC
AATAAAAACAATCAACGGTGCACTTGCTGTAAGGGTGAAATGACGCCAGC
CCAGTCTCTGAGTATAGGCTAGATACGAATAAACAACTGAACCAAGGCTA
GATGATAATCCTAAAACGGTTTGTATTCTAGCTCGGTGTTTGACAGGGAA
CGATTCTGCAGAATAGTTTGATATGATTCTTCCGCCACTCAAGCCAGACG
CTGTGAAAAATAAAATTAATAAAGCATCGAAATGACTTTCAGAAGCACAT
AAAAGTAGTGTGAAATATAAACTGAGTGTGGTCGTAACTGCAATCATTAA
TTTACGCCCGTACCGATCCGCCAACCAGCCAAAGTAAAACGATCCAAGGG
CCAAACCAATACATAAAGTTGCCCATACGAGTTGCGGTTCATCCGCCCGA
TCGCCCGGTTCACACGCCCAATTGATTAAGATAACGTTGGCAAGAATGTT
AGTAAGAGCTCCGTATGCGAAACAAACGCAACTCAAAAGAATGACCATTT
TGATGGTGTGTTTACCGAAGCCGTAGTAATCGATCAATTCCTCGATCGGA
ATTGGAACATGTTTATCTTTTCGTCGGATGGTGACTTTGTTGTCAACCAT
TTTGGATTGTTGTTGTTTCATTGCGTTTTGATTTTGCACTTTTGCTTTGG
GCTGAAATCAATATGATACATTTGTATTCAGTGATTGAACCTGTGAAATA
TAAAAAGAGTAAATCAATTTTCAAACTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067591-exon-scaffold_471-1575043694:48531..48870 | TCONS_00067591-exon-scaffold_471-1575043694:48531..48870 | Clytia hemisphaerica | exon |
| TCONS_00067591-exon-scaffold_471-1575043694:46591..48060 | TCONS_00067591-exon-scaffold_471-1575043694:46591..48060 | Clytia hemisphaerica | exon |
| TCONS_00067591-exon-scaffold_471-1510915933:48531..48870 | TCONS_00067591-exon-scaffold_471-1510915933:48531..48870 | Clytia hemisphaerica | exon |
| TCONS_00067591-exon-scaffold_471-1510915933:46591..48060 | TCONS_00067591-exon-scaffold_471-1510915933:46591..48060 | Clytia hemisphaerica | exon |
| TCONS_00067591-exon-scaffold_471-1491911889:48531..48870 | TCONS_00067591-exon-scaffold_471-1491911889:48531..48870 | Clytia hemisphaerica | exon |
| TCONS_00067591-exon-scaffold_471-1491911889:46591..48060 | TCONS_00067591-exon-scaffold_471-1491911889:46591..48060 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_471 | supercontig | scaffold_471:46591..48870 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00067591 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.508e-19 Identity = 95/418 (22.73%), Postives = 196/418 (46.89%), Query Frame = -2
Query: 394 IEELIDYYGFGKHTIKMVILLSCVCFAYGALTNILANVILINWACEPGDRADEPQLVWATLCIGLALGSFYFGWLADRYGRKLMIAVXXXXXXXXXXXLCASESHFDALLILFFTASGLSGGRIISNYSAESFPVKHRARIQTXXXXXXXXXXXXXXXLAY--TQRLGWRHFTLTASAPLIVFIVIPFWLPESIPYLQMTGNEDELYRVFQHLAESHGKNLKRRTLLTARTIKNRGNLPTLFSKSTICGTLIVMLLWATSRLSMSVSTVLHYNTIVFNKTTCPENQVDILQS----LSFKEVLNCKHSSDVFYVSFIG-SLAESIGLAITFIFINHVSRRFAFICLLLINSAGFIAMNICSVATIHTALVLITMATSASFFQVLCIFTNEFYHASVRCTATGMFNFISLLALVLIPIL 1626
+E+ ++ GFGK K+ +L A A+ ++ +++ CE + + L+ + + +G+ S +G ++D+YGRK + ++ +LY+ +L + + L++ G+ G AE P+K RA+ ++ + ++G+V LA LGWR + ++ PL++F V+ FWLPES Y ++GN+++ + +A +G + L+ +R ++RG + LF+ TL++ +W ++ S +Y ++ V + S + K L C++ S+ Y+ + +L+E G+ +T I+ + R+ +I S + + IC + T L+ I A + FQ ++T E Y + R G + ++ + ++ P +
Sbjct: 70 VEDAVEAIGFGKFQWKLSVLTGLAWMA-DAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ-EDRGKMRDLFTPHFRWTTLLLWFIWFSNAFS-------YYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFI 478
The following BLAST results are available for this feature:
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