TCONS_00067587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067587
Unique NameTCONS_00067587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067587 ID=TCONS_00067587|Name=TCONS_00067587|organism=Clytia hemisphaerica|type=transcript|length=1791bp
ttttattttattttaatagttttcatttctttattaggttgcaccatttg
taattaggtttctaaacttggtgtcccttccttcgggtaaatatatgttt
tgaatttgaattttggtttgaCAGTTTCATCACTTTTTAACAGACTTTTT
GGCAAACAAAATATGCGAATCCTGATGGTGGGATTGGATGCTGCTGGTAA
AACGACAATTTTATATAAATTAAAACTTGGTGAAATTGTCACCACCATAC
CCACTATAGGTTTTAACGTTGAGACAGTTGAATACAAAAACATAAGCTTT
ACCGTATGGGATGTCGGAGGTCAAGATAAAATCCGTCCATTATGGAGACA
TTACTTTACCAATACACAAGGCCTAATCTTCGTCGTCGACAGTAACGATA
GAGAGCGTATACAAGAAGCTGCTGCtgaattaaataaaatgGTCAACGAG
GACGAACTGAAAGACTCCTTCATTCTTGTATTCGCCAACAAACAAGATTT
GCCTAACGCTCTCTCCACCAGTGAACTGACTGAAAAACTCGGACTTCATC
AACTACGCGGCCGCAAGTGGTACGTCCAAGCGGCGTGCGCTACACAAGGA
AATGGTTTATACGAAGGTCTGGACTGGCTTTCCAATGAACTCTCCAAATA
AATTCAATTCTCATCATCAACAACTGGATTGTCAAGAAATTCATCTCTGG
GTACGCGTTCTTGCGCGTTCTGTTCAGTAATGGTGGTTGCACCTGGATCG
ACTTACACCATAAAGAACTGACACAACGTTTAAATTAGCTTTACCTGAGT
TAGCCACtcaagatttttattttctcgtattttttcatttttattagaac
tttatcctttatttttgtttatatgtGAATGAATTTTATCTTTCTCCCTT
TTGACTTATTCGAGAGAAGTTTCGACCAAGGTATTTCATGGGTATGGGTA
TTGTTGGTATCTTTCTCACTACTCAACGCACTCaatcatatttcttttgt
tgCTCACTGCTCTTTTTCTAAAAGTCATGAACGATAAAGTCTGGAGAGGC
ACTTGTAGATGTATTTTTCACAGATTTTTAACACTGATCAGCCAGTATTT
TGCTTTGCTAAACGCTAAGTTGGTTTATTTGCTTTATTTGTTTGTAGACG
TGACTTACAAGCGttagtcaaaaaattcaacttttaagtTATCATGCTAC
TAATAAGTAATATTTTATGGAATTTATTGTATTGTGATGATGTCATTtcg
agaaaataacaataggatTATCTATGTCGGAATAATAATTTGTGATTGGT
TTCCACCATTTTCAAGAATACCTTGCAGATGATCATGCTTGCCCCTTGGA
ACGGTTTCATAATAAAAAGTCTCCGGGAAGTATGAACCTTTAACGGAAGC
ATCACCATACCATTTGAAGCTGTTTAAAGGGCAACTAGTTCccaaatttt
ccttttcaatttatAAAATAGGTTAAACTGCAGACTAAACTGTGCTGATC
ACGGTAAATCTAGCTTGTTGTTAGaagatgctatcgtccgtaaaTGGGAT
AGTAAATGTGGCAAAAGATATATGGCAGAGTTTACATCCTTTACGGCGGT
TTACGGGgaaaaaaagtggcggtagaacACCTCGCCACTGCTGACTCCTT
TCGGGCTAATAACtaccgttttcaaatttatcctgCCTATTTCGTTCGCT
TTTTATAATGATCTTGTGTAAACGATATGATCGTCTAGCTCGTTGTTTAT
CCAGTGTTTTTACATAAGTCATGCGATCGCGCACATCTGCT
Run BLAST on NCBI

protein sequence of TCONS_00067587-protein

>TCONS_00067587-protein ID=TCONS_00067587-protein|Name=TCONS_00067587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWD
VGGQDKIRPLWRHYFTNTQGLIFVVDSNDRERIQEAAAELNKMVNEDELK
DSFILVFANKQDLPNALSTSELTEKLGLHQLRGRKWYVQAACATQGNGLY
EGLDWLSNELSK
Run BLAST on NCBI

transcript from alignment at scaffold_471:3581..18818-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067587 ID=TCONS_00067587|Name=TCONS_00067587|organism=Clytia hemisphaerica|type=transcript|length=15238bp|location=Sequence derived from alignment at scaffold_471:3581..18818- (Clytia hemisphaerica)
TTTTATTTTATTTTAATAGTTTTCATTTCTTTATTAGGTTGCACCATTTG
TAATTAGGTTTCTAAACTTGGTGTCCCTTCCTTCGGGTAAATATATGTTT
TGAATTTGAATTTTGGTTTGACAGTTTCATCACTTTTTAACAGACTTTTT
GGCAAACAAAATATGCGAATCCTGATGGGTGAGTTTCATATTTATAAAAA
TCCACAATTTTTATGACTAGAATATTTGGAATACAGGACTAGCATTTTTC
TTAATAGACTATTGCTTTTTGGAGTCTTACCTGAAAAGAAACTTAGATTT
GGTTAAAAAAGCACTTCAAATCAGTTAATTTTTAGAAGTCACACAATCAA
CCTTTTCTATTTTGTAACATGTAGAATTTGATTGAATTGGCATATAAGTA
ACCTGAGGTCAGATGCTGTATTCCAGGATATTTCTGAATGATCTGAATTG
GTGGTAACTGTGTAATTGCATCCTTATCTTTCTATAGACCTTTTTTCAAA
GAGGATGTCATGTTGAATAATTATGTAGTCCAGCCATAAAAACAATGATA
TAGCCATGCATAATTACTGTATCATGCATATTGTAATAATTATTCATGGT
TTATCATTGTTTTTCTGCTGGACTACATACTTATTTAACAGGGTGGCCTC
TTTGAAAAAAGGTCTATTGGAAATGACAGCAATCTCAAATATCTTCGTTT
CACGTTGCCCAAGTAATTGACCCCGGGGGGGGGTACTAGGGTTGGTGAAT
GAGGGGTATGTGCGGACGGGACCTCCGAAAACCGACCCTTAGAGAGACCA
AATTTTAGTGAAAAAGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGA
GAGACTTTGAAAGGTGAAAAACCCGACCCTTACCGTCCGCACATACCCAG
CACCTATTTTTGCCTAAGTCCCCCCCCCGGGTAATTGACTCTTGCTTGAT
TGAAAATTGTGTCAGGTCAGGGGGAGTCGGTAAAATCGACATATAGCCTA
TATAGCCTTTGCTCAAAAAAACTATTATTGCTGATATTTTGCAAGCAATT
TCTAATGCATTTGTAGCATTTTAACTTTGTTTATCATAATCATCATAGGC
ACCATTTTGTGTTAGATCCTGGACACCGCCTGTCTGGTGGGCGTTTTTTA
TTTAATGTATATATGGTCGGATATTAGGTTAGAATGCCAAAACACCCTAC
ATTTTCCCATCTTACATTAATTTTCCCACCGTACATTAATTTTCCCACCG
GACGATGTCAGTGGCGTTTTTCTACCGCTTCAAGGCGGCCAAGCAGAGCG
CTTTTGGATCGCTTGTAAAAACGCGCGTCCCTGGTCAACTGCAGTCTTTA
ACAAATCCATATCTGTTTCAGGAAACAACATAGTAAGTCTGATCACATTT
AATCTTTTTTCGCGTGGTTTGTTTTCTCAGACCAAAGTTTCTTTCTAGTT
TCAAAATTGAAAGTAGTGTGTTCATTTTTATACTATTCATGAATTCCATG
AGAAAATTAACATCTAGGTCAAAATTTCAAAGTCAAAAATAACTTAAGTT
TTCATTTTCTCTTGAATATACATATCTTGAAGTGTGAGAATCCAGAAAAT
CTTTCTTTAAAGTCCATTTTTCACGCTTCTGTGCTGGGGTGAAGCCTTTA
ATACAAAAAAATACAAAATTGTTTGAAAAAACCAAGAACTTTGCCAGAAA
CTTTTTTCATCCAAATATGATTGTATCAGTACACAAATCTGTGATAGAGT
ACTGACAACCATTATAGAAAACATATCAATAATCAAGATCTGCTTTGCTT
AACTCCTATTTGTTTTTTTTCTGGCTGTTATGCATGCCTACCCGACTGTC
CGTTAGTCACACTGATAAGAAGAAAAGTTCCAATGAAAGCAAAGGGAAGC
TGCATGTTTCTTTTATTTTTGTCTTAAAAACAGAAGTACTATGACCATAA
AAGAAGTGCAAAATTTTAGCCCTAAAGGTTGAGTGGGTAACTCACAAGAG
GCTCATCAAGAAGTGTCCGTTAGTCACGAAAATCATCCTACCTGAGATGA
AATTTTCATAAGATCACTTTTTCAAAATGGTTGGTTTCTAACACCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ATTTTGTCCGTTAGTCACGTTTTTAAATGTCCGTTAGTCACAGCATTTTT
TGCCCAATTTTTGTCATATTTTCTTACTTTGACAATTTTTTTTCAAAATT
GATTTTGAAACATAAAATTCAACCTTTCCTCTAGTGAATTTAAGCAAAAA
ACCTAACCTGTAGCTTTAGGAACAGCACTTTACATCTGTTTGTAAAAGTG
TCCCATTTTAGATGTTAATTTTTGTGTCCGTTAGTCACGGGCCTATTAAT
TGCAATTTCTGACCAAGTGAATGTCAAGAGAAAAAGTTTTATATGGTTCT
TGAAACTTTGACCCCCACTGATAGTTACCACACCAAAAGAAGTTTTATTC
CTATTTTCAAGCTTGACTTCTAGCCTGCTAAACAGTGGAAATGTCCGTTA
GTCACATATGGAATTCATGTATTGTATTCAATTCTAAAACTAAACAACTT
CTTAGACTCATTTACCAAAACAAATATGTGGCAGGGACAAATCTTTAAAA
AGAGGGCGGAAGTGTTATATGGCGTTATAACGAATCAAAGGCGGCTACAC
CGGACGAGTACGGTGGAAATAAATCTTTGAGGAATAGCTCCCACCGTACA
TTGTACGATGTAGCCGCCATACCTTGTACGGTGGTCAAAATAGGTTGACT
TGTTCCCACCGAACAACACCGTACAATGTATGGCGGTGTCCAGGGTCGTT
TTGTGTCAAAGGTCACAGTGTTCAAAGGAGTTCATAAATTGAAACCACAC
AAAATGTGCAGTCGTTTTGGCTGGCTGACTATGGAACATTTTTCTTTGCC
TTATTTAATGCTCTTTTAGGGATGACAATCCTTTTTTCAACAGCTTCAGG
GCATAAGGGGGGGAGAGGGTCAACGTTTACCGTTAACTGCTCTAACTTAG
GACTATCTGACAAAACATGGGAAGGCAATTTGGCCACCATTTCACCGAAC
CTCCAAAGTCATTTGATTTGAGTTAATGAACGATTTTCTTTCGCACCGAG
TACCGTGAGATCGGATTACTTGCAGGAGTGGGGAGGCTAACATGTATAGC
CCTCAAATGAACTACCCAGGCTGGTCATTAAAATACAAAGTTGAATCAAA
ACAAAAATGGTAGAGTAGAGCTGCGAGCGGAGTTGTGTAGTTTATTTGGT
TTGAAATTTTGCTGCTTTGATTGGTCAGTCATTCGATGGCTATGCAAGTT
TCCCTCCACTGATGCAAGTTACCCACTTGAAAGTAGGCTTTTAAATCGAA
ATATAAGAACAATTCGTAGTGGAACACCCGCAAATGTCTGGAACAAAAAA
GACCAAATTAGTGGCAAAACAATCAGTGTTTGAGGTCACTCGCGTGGCCA
GTTAAACACTCGTTATTTGTCAATCCCAATCGGTGTCCGGGTATTTTAAA
TGAAAACAAACCCTTAAAAAGGGCGCGCTATCAGTAAACTAAAAGTTATT
GTGACATGTTATGACAGAAAGTATGATTGATAAACTTGGTGGAGTTATCA
AAGCAAATTTTTTGTCAACAGAGATTTAACAGTAAGTGAAAATACAGGCC
AGATATCAACAGTCCCATGTTTCGACCAATCGTCCCAAGTTAAGGCAGTT
GATGGTATGTTGTCAAAAATAGTTAAAAAAGACAGATAATCTCACTTAAA
ATAGAAGCTCCTCGCAGTGTCCCTAAGTCTTAAAATACTAAGAAGCCATA
CAATCCATCACTTCCGCCATACTTTTCACTCGTATATTGAGAAATATAAT
TTGTCACGTAACCCAATGCGGCAATACCTCATCCCGCCCTCATAGTAACA
ACCGCTATTCCTATCCCGCCCTGACTCGCCTTGGGTTAAATCCTAAGATC
ACAGCTCAAAACCAATGTTTTCCTGTAGAAATAAAGAAGCATTTCAATGT
TAGCAAAGAAAAAGAATGTGAAAGAACATGTAGGGGAAAGTTTCAGGCCT
TCAAAAGTTTATTTTTTTCAAGAATTTTTTGGCTGTTAAGAGGAAGGGGG
AAGGGGGTCGCAGACCAAATTTTGAACAACCTAAAAAATTTGACATTCGA
TCAACTCACTTTTTAGACCCAACGAGGACATGAAATGAAGTTATTTGTGT
TACCATCTAGTGCAGTAATTTGGTCTAATAGACCTTTGCCTATTTGCCAT
AAATACCATTTTATCTCCGGTTATTATTAGCGACATAAACATTAGGCGGG
AATCAAAAAATTGTTCTGTTTGCGTCGCAGCGCGGTTGTTAAAAATACAT
GTAGGTGGGCAGACAGCCAAAAGATTTTTTCCGGGTTTTTGAAAATTGCG
TCAGAAAGGCAATTTCTTCTGCTGATCAGGGGGTGGGGCTGTATCTGTTG
TGTTCTTGTGAAGTATAGCTAAAATGCTATTATCCCTGTAGTTTCAGTCT
AATTAATCAGTGTTATTTGTTTTGTTTAAAGAAGAGCTAGAGAAAAAAAG
CTCTCCCGGAAGTCGGGTAACTTGCATCAGGGGAGTGAAACTTGTATAGC
TCTCAAATGAATGANGAAAAAAAGCCATCCCAGAAGTCGGGTAACTTGCA
TCAGGGGAGTGAAACTTGTATAGCTCTCAAATGAATGACCAATCAAAGCA
GCAAAATACAAAGAAAACCAGAGAAAACAAAACAAACCTGATTTACAAGA
TTTAGGAATTGTAAAATGTATATCTCCACTAGAGCTGTGAGCACAATATT
TTTGGCCCAGCGCTAGCGATAGGGCCTTTCATTAGCACTTTTCCTTCCGT
CCGTGTATCTGTCTGTCCGTTTTGGTAGAAACGGCGCTTAAAACCAGTAA
CACACTTTTTAATTTTGCCATCTGGAGAGGGAAAAGCTTGCTAAAGTCGG
ATACTGGCTATAAAAGATATATTTTCTGATTCCGCGCTCCTTCAAAAACA
ATTTTCAAAACAAAGCAAGATGGCGGTCGAAGCGAGGAGGTTGATTCATA
CTTTCTTGAACATTTTCTTTGCTTTAGTGGTCAAGAGACTTTCAAACAAG
ATATTTTGTAATTGTCTTTGTTTATAAACCTTTTTCAACATTCTGCCATG
TCTTTGCTCAAGTTTTCATAAAGTTTTATGAGTAAAAATTCTACCTTAAA
TCACTTTCATTTTTATTTTCTTGTTTTCAAAAAGACTTTACAAATTTTTA
GGAAATAATGGCTTCTGATATAGAAATAAATAAACTGAAATGCAGCTGAT
GTGTAAAATTGAATAAGATTGGAACTTTTTTCTTGATGCTACATAAGAAA
ACAATCACTTCTGGATATGTGGCTGTTCATGATTCAGGCTGTTAACAAAA
CCACGGTGGTCAGTGTGGTGGGACGTGGTATGATTTTCAAACTCAACACA
TAATTATTTCAAGTAAACTGATTCTGGAATTTGGTAATGGACACTAAAAT
GGACCCCATGTGTAAATTGGGACAAGATTGGAACTTTTTCCATGATGTTA
CGTGTGAAAATGGTTGTTTCTGGATCTGTCTCGTTTGACGATTGGTGGCT
TGATTTGTCAAACTCGACACAGAATTATTTCAAATAAGTTGATTATGGAA
TCATGTTAATGGAGACTGAAATGCAGCTCATGTGTAAATTTGAACAAGAT
TGGGACNTTGCATGTTAGCCTCCACTGATGCAAGTTACCCAATCTCACGG
TACCTGAGAGTATTCAACCGGGTGAACTTCAATAAAATTTCAAGCGTCTA
ACCAATGAGAAGTACAGTGGTGATTTTGGAAAAACTTTCCCTGTCTTCAC
TTTGATCCATGTCAACAGGGTCATACATTTGCTGTTTTGCACGCTCGTTT
TCAACACGTTACTTTTCGCTGGGCCTTNTTCTTCACGTATATTGAATAAA
ATCGTCATTTCTGGATCTGTCGCATTAAACGATCGGTGGCTTGATTTTTC
AAACTCGACTCACATAATCATTCAAAGCATAAACTGATTCTGGAATCTGT
TAATGGACACTAAAATGCAGCTCATGGGTAAATTTGAACTAGATTGAAAC
ATTTTTCATGGTTACAATGCATGAACAGTGAAAATGGTCATTTTTGGATC
TGTCACATTTAACTGTCAACTCACATTAAATCACATGAATTTTATTAGCC
TTGATATGCAGACCGTAAACTATTTCATCGTCTAGTTTTTTAAAGATTAT
TCTTCTGGTTTACAGTCAGGTCCAACTAACATGCCTGCAGGGATATTTCT
TCCTGAATATGTGAGTGCACCTAATTGGTTAAAAAGCGCCCATTTACTAT
ATATTCGCGGTTTTTTAAAAATATTTTTCTATGGGCGCGCATAATTTATG
GCAATTTTCCACCTAGCACATTTTTATTCCACCCCCCCCCTGCTTATTAC
CGTAACTTGATCTAATGTCGACATTCCTCCCCTAAATTCGACACCCTTTT
CTAGAGCTGAAAAATTAAAAAAAGGTGTAAATTATTTTATTTGCTTAGTG
GTAAGGGAGGATAAATCTTTTTTCAATCACCGATTCCGACTTTCATATTA
TTCCTATCTCTAAAGAAGGGTGTCGAAATTAGAAGACGGATGTCGAGATT
AGACCAACTTACGGTAAGTTTTGAGATTTTTTCCAACCTCCCCCCACTTA
TTCCAAACCCCCCAGCTATTAGGTACCGTGAGATTGGATAACTTGCATCA
GTGGAGGCTAACATGCATAGCCCTTAAATGAAAGACCTGGCTGGTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTTTTAATTACTTAGCTA
AAAGAATTAGAAATATCTTAATGATACCTAAAACCTCAAAATTTGAAGTT
TACTTGATAACTACATCATAAGTTATGCCAATTTTAATATTTTGAGATTT
TACAGGGTTTTAGCTAGATTTTATGACATACCTGTTCAAAGAACTTGTAC
ACCTGATGTGGGCTTATGATGGTAAAAATTGGGATACATCAGGATACATG
TTGCTAATATGATTATATTAAAAGTCAAAGTTTCAGTGAACTATAAGTAA
TAAAGTACCAGGGTGGTGGAAAACACCCCCTGATAAAAATGGGGTTAAAA
TTTTGTACATAGCATTCAAACTGATACAATATGGAATTTCTCATAAAAAT
TGCTCATAAGATTTGAAAGGACCGATTCTTACAGAAAATGGACCTTAAAA
TTCCATGATTCTGAGAAAACCTCAATCAAGGTTGAAACCTTAAAAAGTTT
TCTTGGAGAAACCTTGAAATCCTTCAGAATTCCCTTTAAACTTTGAAAAG
AAAGATATATTTTGTAGCATCCCTGTCAATCTTAATTGCAATTGGAGATC
GTTGCCTGATTGAACTAACTCTATGGATGCTGTCAAATAGTGCATGTTTC
GCGGTAGGTCCCTGCTCATAGTAGCCAGTCAAAAGTTAGTGACTAATGCT
ATTGAATTTGCAAATTAGGATTATTTCGTTTTTTGCAGATATTCTTAATT
GAATAAGTTGAAAAAGCGTGAATTCATCCAAGAACTTAGATGGATTTAAG
ATATCACATTCAAAATGGCACGAATTTCGATACGATAGTTTTTTCGATCG
CTCTTAGAACAATAAATTAAAGTCTCGCCTTATCTACGTTTATGAATAAT
CTTCATATTGTCTTCTTTACTTTTTAGTGGGATTGGATGCTGCTGGTAAA
ACGACAATTTTATATAAATTAAAACTTGGTGAAATTGTCACCACCATACC
CACTATAGGTAGGTTATCTTTAGATCATCATGATATGATATAACTGAGTG
AGAGGGAGAGCTTTTTAGTCAGCGAATTTTCGGGTAACAAATTTTTCTCC
TTTTTTCTAAGAGTCTGTAAAAATTGTAGTAGAACCTGCAAAAAATGAGA
AAAACCTGCAAAATTTAGTTGCAAAATATTTGAATTATTTGAACTCATCT
GAAAAAGCTATAACCTGAAAAACTTCACTCTGCGATTCTTTAGGCGTACA
AACTTTCGCGAGCAGAAACTTTCGCGAGGACGAAAAATCGCGAAATTCAC
AACATTTACTTTCGCGAATTTAACGGAAAAATAATTTTCGCGAGCATAAA
CTTTCGCGAATCAAGACTTAGTAAAATTGAGAATTTTCACATGAAAAAAT
GGCTTAGACTAGAGGGACAAATACTTCTTGGATTGGCTTGAAACATTTGT
CCTTTGACTTATTAGTCTTTAGTAGGCTAAACAGTGCCATAAAAGTTACA
TTCCATTCAAAGTTTGAAGTTTTACAGATTTTCTATTTTTTGCGAGCATA
AACTTTCGCGAATGGCCCTTCCTAGAATTTTTAAAGACCAGGGCCAAAAT
TCACGAACATTTGTACGCCTAAAATATTTAAATACGACAAGGCTTTGGGT
TATAATCTTCAAATCATTTCAAAACGGTTAAAAGCTGTATTGTGGGTTTG
ACCAGGTTTGAAGTTTAAGTTTAAGCTGTGGTTCCTCGTGGTTTAATTCA
GAGAAATACTCGCATGTATGAATAGTTCAGGTATAAGCAGTCTCTTTGTT
TCTGATTGTCGTTGTCAATCCTTTTATTTTTCTCTAAGGTTTTAACGTTG
AGACAGTTGAATACAAAAACATAAGCTTTACCGTATGGGATGTCGGAGGT
CAAGATAAAATCCGTCCATTATGGAGACATTACTTTACCAATACNAAGCT
TCACCGTATGGGATGTCGGAGGTCAAGATAAAATCCGTCCATTATGGAGA
CATTACTTTACCAATACACAAGGCCTAATCTTCGTCGTCGACAGTAACGA
TAGAGAGCGTATACAAGAAGCTGCTGCTGAATTAAATAAAATGGTATACT
GTCTTTCAATCTGTTGATAACTTTATCTCTGCATCTTACATACAAGTTTC
TGAAACATTTTCTCTGTGCCTCTATTCGCTCTCAACTCTTCGTGTATCTA
AAGGAGCTTACCCTATTAAAATTAATAATTTGGAAGATTCATGAAGTGTA
GATGGAGAGAGAAGAGGCGGAATAAGCAAGCTTGGTATAGAATGGCACAA
TAAGAAGAGGGCTGACATGAACTTGAAATAAAATACGCAAATAAAGTTTC
AAAAGGGGATCAACCTAGGGTGAGGGAGTTGATTTAGACTGGGGGAGGGA
AGATTGAAGCAATGGTGTTGTAATGCATGTCGTTTGTTTGCAGGTCAACG
AGGACGAACTGAAAGACTCCTTCATTCTTGTATTCGCCAACAAACAAGAT
TTGCCTAACGCTCTCTCCACCAGTGAACTGACTGAAAAACTCGGACTTCA
TCAACTACGCGGCCGCAAGGTAAATCAATTCATTTAAGTAAGCGGTAGTG
GAGTAAACAATGATTAAGGTTGGGATTTAAGGAATTATTAAATTTGTGAC
GTTTTGTAGCAGTGAACTATATTCTCTTTATCGATGAATGACTTTCTTGT
ACTCTCAGGTACCTAATAGCCGGGGGTTGGAAAAAATCTCAAAACTTAAT
AAGCAGGGGGGGGGGTTGGAATAAAAACGTCCTGGATAGAAATTTTTTGA
AAAGGAGGCTAATACAGCAGAATTGGGACAAAAAAGGGAACGTTCAAAAA
CATTTTCCCGAAAATTAATAAGGGGGGGGGGGGGTTGGAATAAAAACGTC
CTGGATAGAAATTTTTTGAAAAGGAGGCTAATACAGCAGAATTGGGACAA
AAAAGGGAACGTTCAAAAACATTTTCCCGAAAATTAATAAGGGGGGGGGG
GGGTTGGAATAAAAACGTCCTGGATAGAAATTTTTTGAAAAGGAGGCTAA
TACAGCAGAATTGGGACAAAAAAGGGAACGTTCAAAAACATTTTCCCGAA
AATTAATAAGGGGGGGGGGGGGTTGGAATAAAAACGTCCTGGATAGAAAT
TTTTTGAAAAGGAGGCTAATACAGCAGAATTGGGACAAAAAAGGGAACGT
TCAAAAACATTTTCCCGAAAATTAATAAGGGGGGGGGGGGGTTGGAATAA
GAATGTCCTGGGTGGGAAATTTTCGAAAAATTAATTAGCGGAGGGGGACG
GCTATTAGGTACCCGAGAGTAATTTTCATTGTGATGTTGGAAATTTATCT
GGGATGAATACACTCTTCTCGAGATGCATAAATTTATTGTTGTCCTCGTT
TTCAAACATATTTCATTGCTATGAAATTATACATTTAAACCAATTTAAAT
TCCCAAAAGGCAAACATTAACTCTAAAACAAAAGTACTTGAAACTCAAAA
TGTCTCATGAGGTGTAAACAACACAATTATCATTGTGAATATGTAATTTT
ATAGCAATGAAATCTGTTTGAAAACGAGGACAACAATAAATTTATGCATC
TCGAGAAGAGTGTATTTACTTTCTAAATGTATCTGCAAAAATATCTGAAA
AAGCGGCTCAAAGTTGGCCGTCGTCAAATCACGAAAATAATTAGATTTCC
CATGCTCTAATTTTGACATTGGATCTTTTGCCTCGGCGGCAGCGGTCTGG
GATTTATGGAAAGATAAAAAATACTTCTTCAACCTGCTTCAACCCTTTAT
CTTTATCTGTGCCAAACCATATCATTCTGTTGATGAAATGTTTGCAGTAT
CTCGTTGATTTTATTTTTTTCTGGGTAATTTTGGGAAACTCTTTACGATA
GAGCTTACTTCATATAGAAATGACAAAATAATGAAAAATAACGAATCAAT
TAAAAACTTGGTTGTAAACTATTGTAAAGAATTGACGCTTCAGATGTATT
CACCTAAATTTATCAAATAGATAAAAAGAAATGAATGAGCCGGAGATTTT
GAAAAATCATACTCCCATTTTTAGGCCCTATTGAAATTAAAGGGACTGAA
CTTGAACCCCTCATGTTGAGAATGAGATGCAAAACATTTTTTATTTAGTG
ATATTAAGTGATATATTCTCGAAATTTCGAACTCGAACTCAAACAAATTT
CCCGTGCGATTTCGAGTTGTGTATTTTAATGGTTTATGTCATTGCATGGC
GGTTCGGTAAAATCTCTTATGCAATTTAAAAATAATAAACTCGTGACTTC
TTCTCTTTTTTCAGTGGTACGTCCAAGCGGCGTGCGCTACACAAGGAAAT
GGTTTATACGAAGGTCTGGACTGGCTTTCCAATGAACTCTCCAAATAAAT
TCAATTCTCATCATCAACAACTGGATTGTCAAGAAATTCATCTCTGGGTA
CGCGTTCTTGCGCGTTCTGTTCAGTAATGGTGGTTGCACCTGGATCGACT
TACACCATAAAGAACTGACACAACGTTTAAATTAGCTTTACCTGAGTTAG
CCACTCAAGATTTTTATTTTCTCGTATTTTTTCATTTTTATTAGAACTTT
ATCCTTTATTTTTGTTTATATGTGAATGAATTTTATCTTTCTCCCTTTTG
ACTTATTCGAGAGAAGTTTCGACCAAGGTATTTCATGGGTATGGGTATTG
TTGGTATCTTTCTCACTACTCAACGCACTCAATCATATTTCTTTTGTTGC
TCACTGCTCTTTTTCTAAAAGTCATGAACGATAAAGTCTGGAGAGGCACT
TGTAGATGTATTTTTCACAGATTTTTAACACTGATCAGCCAGTATTTTGC
TTTGCTAAACGCTAAGTTGGTTTATTTGCTTTATTTGTTTGTAGACGTGA
CTTACAAGCGTTAGTCAAAAAATTCAACTTTTAAGTTATCATGCTACTAA
TAAGTAATATTTTATGGAATTTATTGTATTGTGATGATGTCATTTCGAGA
AAATAACAATAGGATTATCTATGTCGGAATAATAATTTGTGATTGGTTTC
CACCATTTTCAAGAATACCTTGCAGATGATCATGCTTGCCCCTTGGAACG
GTTTCATAATAAAAAGTCTCCGGGAAGTATGAACCTTTAACGGAAGCATC
ACCATACCATTTGAAGCTGTTTAAAGGGCAACTAGTTCCCAAATTTTCCT
TTTCAATTTATAAAATAGGTTAAACTGCAGACTAAACTGTGCTGATCACG
GTAAATCTAGCTTGTTGTTAGAAGATGCTATCGTCCGTAAATGGGATAGT
AAATGTGGCAAAAGATATATGGCAGAGTTTACATCCTTTACGGCGGTTTA
CGGGGAAAAAAAGTGGCGGTAGAACACCTCGCCACTGCTGACTCCTTTCG
GGCTAATAACTACCGTTTTCAAATTTATCCTGCCTATTTCGTTCGCTTTT
TATAATGATCTTGTGTAAACGATATGATCGTCTAGCTCGTTGTTTATCCA
GTGTTTTTACATAAGTCATGCGATCGCGCACATCTGCT

Coding sequence (CDS) from alignment at scaffold_471:3581..18818-

>TCONS_00067587 ID=TCONS_00067587|Name=TCONS_00067587|organism=Clytia hemisphaerica|type=CDS|length=2934bp|location=Sequence derived from alignment at scaffold_471:3581..18818- (Clytia hemisphaerica)
TGGTACGTCCAAGCGGCGTGCGCTACACAAGGAAATGGTTTATACGAAGG
TCTGGACTGGCTTTCCAATGAACTCTCCAAATAAGTCAACGAGGACGAAC
TGAAAGACTCCTTCATTCTTGTATTCGCCAACAAACAAGATTTGCCTAAC
GCTCTCTCCACCAGTGAACTGACTGAAAAACTCGGACTTCATCAACTACG
CGGCCGCAAGATTACTTTACCAATACACAAGGCCTAATCTTCGTCGTCGA
CAGTAACGATAGAGAGCGTATACAAGAAGCTGCTGCTGAATTAAATAAAA
TGGTTTTAACGTTGAGACAGTTGAATACAAAAACATAAGCTTTACCGTAT
GGGATGTCGGAGGTCAAGATAAAATCCGTCCATTATGGAGACTGGGATTG
GATGCTGCTGGTAAAACGACAATTTTATATAAATTAAAACTTGGTGAAAT
TGTCACCACCATACCCACTATAGATGCGAATCCTGATGGTGGTACGTCCA
AGCGGCGTGCGCTACACAAGGAAATGGTTTATACGAAGGTCTGGACTGGC
TTTCCAATGAACTCTCCAAATAAGTCAACGAGGACGAACTGAAAGACTCC
TTCATTCTTGTATTCGCCAACAAACAAGATTTGCCTAACGCTCTCTCCAC
CAGTGAACTGACTGAAAAACTCGGACTTCATCAACTACGCGGCCGCAAGA
TTACTTTACCAATACACAAGGCCTAATCTTCGTCGTCGACAGTAACGATA
GAGAGCGTATACAAGAAGCTGCTGCTGAATTAAATAAAATGGTTTTAACG
TTGAGACAGTTGAATACAAAAACATAAGCTTTACCGTATGGGATGTCGGA
GGTCAAGATAAAATCCGTCCATTATGGAGACTGGGATTGGATGCTGCTGG
TAAAACGACAATTTTATATAAATTAAAACTTGGTGAAATTGTCACCACCA
TACCCACTATAGATGCGAATCCTGATGGTGGTACGTCCAAGCGGCGTGCG
CTACACAAGGAAATGGTTTATACGAAGGTCTGGACTGGCTTTCCAATGAA
CTCTCCAAATAAGTCAACGAGGACGAACTGAAAGACTCCTTCATTCTTGT
ATTCGCCAACAAACAAGATTTGCCTAACGCTCTCTCCACCAGTGAACTGA
CTGAAAAACTCGGACTTCATCAACTACGCGGCCGCAAGATTACTTTACCA
ATACACAAGGCCTAATCTTCGTCGTCGACAGTAACGATAGAGAGCGTATA
CAAGAAGCTGCTGCTGAATTAAATAAAATGGTTTTAACGTTGAGACAGTT
GAATACAAAAACATAAGCTTTACCGTATGGGATGTCGGAGGTCAAGATAA
AATCCGTCCATTATGGAGACTGGGATTGGATGCTGCTGGTAAAACGACAA
TTTTATATAAATTAAAACTTGGTGAAATTGTCACCACCATACCCACTATA
GATGCGAATCCTGATGGTGGTACGTCCAAGCGGCGTGCGCTACACAAGGA
AATGGTTTATACGAAGGTCTGGACTGGCTTTCCAATGAACTCTCCAAATA
AGTCAACGAGGACGAACTGAAAGACTCCTTCATTCTTGTATTCGCCAACA
AACAAGATTTGCCTAACGCTCTCTCCACCAGTGAACTGACTGAAAAACTC
GGACTTCATCAACTACGCGGCCGCAAGATTACTTTACCAATACACAAGGC
CTAATCTTCGTCGTCGACAGTAACGATAGAGAGCGTATACAAGAAGCTGC
TGCTGAATTAAATAAAATGGTTTTAACGTTGAGACAGTTGAATACAAAAA
CATAAGCTTTACCGTATGGGATGTCGGAGGTCAAGATAAAATCCGTCCAT
TATGGAGACTGGGATTGGATGCTGCTGGTAAAACGACAATTTTATATAAA
TTAAAACTTGGTGAAATTGTCACCACCATACCCACTATAGATGCGAATCC
TGATGGTGGTACGTCCAAGCGGCGTGCGCTACACAAGGAAATGGTTTATA
CGAAGGTCTGGACTGGCTTTCCAATGAACTCTCCAAATAAGTCAACGAGG
ACGAACTGAAAGACTCCTTCATTCTTGTATTCGCCAACAAACAAGATTTG
CCTAACGCTCTCTCCACCAGTGAACTGACTGAAAAACTCGGACTTCATCA
ACTACGCGGCCGCAAGATTACTTTACCAATACACAAGGCCTAATCTTCGT
CGTCGACAGTAACGATAGAGAGCGTATACAAGAAGCTGCTGCTGAATTAA
ATAAAATGGTTTTAACGTTGAGACAGTTGAATACAAAAACATAAGCTTTA
CCGTATGGGATGTCGGAGGTCAAGATAAAATCCGTCCATTATGGAGACTG
GGATTGGATGCTGCTGGTAAAACGACAATTTTATATAAATTAAAACTTGG
TGAAATTGTCACCACCATACCCACTATAGATGCGAATCCTGATGGTGGTA
CGTCCAAGCGGCGTGCGCTACACAAGGAAATGGTTTATACGAAGGTCTGG
ACTGGCTTTCCAATGAACTCTCCAAATAAGTCAACGAGGACGAACTGAAA
GACTCCTTCATTCTTGTATTCGCCAACAAACAAGATTTGCCTAACGCTCT
CTCCACCAGTGAACTGACTGAAAAACTCGGACTTCATCAACTACGCGGCC
GCAAGATTACTTTACCAATACACAAGGCCTAATCTTCGTCGTCGACAGTA
ACGATAGAGAGCGTATACAAGAAGCTGCTGCTGAATTAAATAAAATGGTT
TTAACGTTGAGACAGTTGAATACAAAAACATAAGCTTTACCGTATGGGAT
GTCGGAGGTCAAGATAAAATCCGTCCATTATGGAGACTGGGATTGGATGC
TGCTGGTAAAACGACAATTTTATATAAATTAAAACTTGGTGAAATTGTCA
CCACCATACCCACTATAGATGCGAATCCTGATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042203XLOC_042203Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067587-proteinTCONS_00067587-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067587-exon-scaffold_471-1575043694:18641..18818TCONS_00067587-exon-scaffold_471-1575043694:18641..18818Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1575043694:8111..8191TCONS_00067587-exon-scaffold_471-1575043694:8111..8191Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1575043694:7191..7280TCONS_00067587-exon-scaffold_471-1575043694:7191..7280Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1575043694:7026..7117TCONS_00067587-exon-scaffold_471-1575043694:7026..7117Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1575043694:6550..6675TCONS_00067587-exon-scaffold_471-1575043694:6550..6675Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1575043694:3581..4804TCONS_00067587-exon-scaffold_471-1575043694:3581..4804Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1510915933:18641..18818TCONS_00067587-exon-scaffold_471-1510915933:18641..18818Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1510915933:8111..8191TCONS_00067587-exon-scaffold_471-1510915933:8111..8191Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1510915933:7191..7280TCONS_00067587-exon-scaffold_471-1510915933:7191..7280Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1510915933:7026..7117TCONS_00067587-exon-scaffold_471-1510915933:7026..7117Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1510915933:6550..6675TCONS_00067587-exon-scaffold_471-1510915933:6550..6675Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1510915933:3581..4804TCONS_00067587-exon-scaffold_471-1510915933:3581..4804Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1491911889:18641..18818TCONS_00067587-exon-scaffold_471-1491911889:18641..18818Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1491911889:8111..8191TCONS_00067587-exon-scaffold_471-1491911889:8111..8191Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1491911889:7191..7280TCONS_00067587-exon-scaffold_471-1491911889:7191..7280Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1491911889:7026..7117TCONS_00067587-exon-scaffold_471-1491911889:7026..7117Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1491911889:6550..6675TCONS_00067587-exon-scaffold_471-1491911889:6550..6675Clytia hemisphaericaexon
TCONS_00067587-exon-scaffold_471-1491911889:3581..4804TCONS_00067587-exon-scaffold_471-1491911889:3581..4804Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_471supercontigscaffold_471:3581..18818 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
119.849	121.368	129.562	129.882	98.6776	78.156	165.926	176.87	244.044	187.393	220.802	300.813	237.921	243.259	200.142	181.304	150.438	176.095	158.304	181.877	145.067	141.093	110.546	122.943	142.518	150.008	106.836	113.394	90.2142	86.9585
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00067587 vs. Swiss-Prot (Human)
Match: ARF5 (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 6.898e-105
Identity = 148/179 (82.68%), Postives = 163/179 (91.06%), Query Frame = 1 
Query:  112 FGLTVSSLFNRLFGKQNMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFTNTQGLIFVVDSNDRERIQEAAAELNKMVNEDELKDSFILVFANKQDLPNALSTSELTEKLGLHQLRGRKWYVQAACATQGNGLYEGLDWLSNELSK 648
             GLTVS+LF+R+FGK+ MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYF NTQGLIFVVDSNDRER+QE+A EL KM+ EDEL+D+ +LVFANKQD+PNA+  SELT+KLGL  LR R WYVQA CATQG GLY+GLDWLS+ELSK
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 179
The following BLAST results are available for this feature:
BLAST of TCONS_00067587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARF56.898e-10582.68ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
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