TCONS_00067578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067578
Unique NameTCONS_00067578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5184

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067578 ID=TCONS_00067578|Name=TCONS_00067578|organism=Clytia hemisphaerica|type=transcript|length=5184bp
AGGTgctataaaaataagaaaaaataaagaaaaaaatgatcaCTCCATTG
TTCAAGATTCGACAGGACGATGATAACCTTTTCATTGATATATATGCCAA
ATTTGTCAAGGCAAACGATGTTGAAATATACGTGGAAGGGAACATGTTTA
AATTTTACGTGAAGCCATATTTTCTGAGATTGAATCTACCTGGCAAGCTT
TGTGAAGAGTGTGAAGAATCTGGCAAATATGACGTCGGTGAAGGAATCTT
TCAATTTAAATTGAAGAAAGCAACACCAGGAGAATTCTTTCAAGATTTGG
ATATGATAACGACGTTAATGGCAACCAGAAAGGAACTTCAAATACCTTTA
ATTGAAGAAATTAGTACTGatcttgagaaaaaattgaaagtaagtGAAGA
GGAAGagcatgaagaagaaaaagaagaagaagattggGATTGGTGTCAAC
AAACTTCTTCTCAGaatgtcGAGGATTTAACAGGAAAATACAAATATGGC
TTCGCAAATAGTTTCCAAGATGCCTTGTCCAAATTTCAGGAGGAGACAGA
GGAATTCATCGACATTCCATCACCGGATACTACTTCTCATGCTGAACGAC
GGAAACTTCGCATCCATCACGAAAACAACCATTTCAACGTAGAACACTAT
ATGGCGGACTATGTGGAGTGGGATAATATGAGTTCTTTGGTCAACTTTGC
ACCTCCTTGGCTgtcgaaaatgaaaaatagcgAAGAAAAAAACGAACATT
TCGACATGTTGCATTTCacagatgaagaagaaaaaatgttgACTCTTCTA
CCAAATAAGGATTATCTCCTCTCGTCACTGGACGAACGAAAATGTTTACT
TTCGCTGGTGGATCTTCTCTTCGCTTATTGTTATGACCACAGGACCACTG
AGGGTGAAAACACGagTGAATCACCTTGGACGATATGCAAGCTGAGCAGC
ACTCTCTCATGGTTTGATAGTTTTCAAACAATTGATGAAGTGGTGGTCAA
TTGTTGTCGAAGGGCTTTATGTTATCCACTCTATCGAAACTGGCAACTGA
TACTCATCATTTGGAATGATGTCAAAGAGATCATGATGGCAGGGAAAGTT
TGCATAATAAAATGTTTGTTAGATATGCGTGGTATTCTAATGAGAGACGA
ATCGCGATACATTCTCAATGAACTTTACGTCAACCATTACATTGTTTGGG
TACAAAAGGTGAGTCTACAACGTCTCTCATCCATCGCAGAAGCATTGAAA
GAGAAAGACATTCAGAAAGAAGTGGTTGGGTTCAATTTGGAACAGATCGA
ATCAGTGTTTCTCAATAACAACCAAGATGATATTTCATCTTCTTCAACTT
CAACCGAGGAAGATTCATCGAGTGAAGACGAAGAGAGTGACCAAAGCCTC
GATTCCGATGATGAACCAACTCCTCCACCTCCTTGATTCGTTCCTAATGC
ATTGTGGGAAATCATGGGCAAGGTCTGTCCTTGAATATAACCGTCAAAAG
AAGTTTGGCGAAAGGGATGCCATTCTACTAGTATTACCATTCCATCTCTA
CAAGTACATTCTATAGTGTTTTTACACGTACATACTACTTTTACATTAGA
TTATTTTAGTATCATAGCCCATGTATATTTTCATCGCATCATGCGTACTT
TGCATATACATTTCATGTTTACTTTGGAGTAAATCCATAAGCAAACATCC
TTTTCTGAAGTGTTTTTGTTTCACGATGACGTTTGAGTAGAAGTAGATTG
AGAAGATGTCACATTGcaaaacctttctttttttactttttttgtcaGCG
TAGGATGGGGTTGTCACTAATTATATTCCTTCTGATTatcatttcttttt
ttgctttctcTCGTCATCAGGACATAGAAATCAGATGGATGTATTGATTA
GTATTGTATTTCCTTTCCATTCATCATTTCTATCTACTAATTGGCTTTGT
ATACGATTTTCCCCATGATATTGTATAAAGGGGGAAGCAAAAAGTGAATA
TTCATCCTGTCTTTTTCTCTTGTGTAGCTTATACTCTTTTTGTCTTTATA
TTATCTTTCTTTTCAGTCAGTCAGCCAGCCTATGAGTTGTAGTGTCACAC
GACCCTCTATCCATTGATTCTCATTTTTACCCCCCTTACTACACATAATA
TTTACTTTCTAAGCATAGTTTCTCTATGcgctctttttataagaagtaTG
AAGCTGGTTGGAAATGAAATAAAACGTACCATATAAGAATGAAACCAGCT
CTGAAATTTAACTTATAACTCCAATACagcaattaaatttttaaaggaTT
TCTAGAAAAGGTAGTCAGTGAGATCtatcaaatttataaaaagtgaaaaa
ctaaaaggtttcttataaagaaggaCTGAACCCTGACATATAATCGTCAA
CAGGATATTATATTACCATGGTAACTCtgttttgattggcttaaagaTGT
CATGATTATGATACATAATTGTctcttttattattttcatttcagtGTGA
ACAGACAATAGAGCTGACACAAAAAAAATGgaataatcaaaacaaagaaa
aaaatagttgGCTTTGGACGACGTCAGATTCTCAGCATGACATTTTTTTC
TCCCTTGGTTCGTTGTGTGGTTtcattgaattaaaaaagaagagaaaaga
aacgTTAGAACGAAAGATTCACATCAAAccttttgagatttttggatGGC
TCCATTTTGTTTTGTGTAGCAGACGTATTCATTGAGTGATTCTCGAAAGT
TGTAAATACATGGTTTTCTGATTTGACGTTCAATATGAATTCCGAGGATG
TGCAATGGTTACACACTCAAACATACCAATTCGGTGAAAAGATTTTGATT
ATAGATTGTCGCACGTTAAATGAATATTCGAAAGGACACATTGAGGGTGC
CATTAATTTGTTTGTCCCATCTTTAATGTTGAGACGATTAAAGAAAGGCA
ACGTACCTTTGAAGAACTTTGTTAATTCTGATATCGCAAAAGAGAAGTTT
GAGAATCGATCAAGTTGTGATAAGATTGTTTTATATGATGAATCGTCAAC
TACCGTCACCGCTGACAGCATTTTGGAAATCTTATCGAAGAAATTATTGG
ATGCGCCACCCTTAGTCCATCTGAAAGGTGGTTTTCATCATTTCGAGCAA
GCATTCCCTCACTTATGTACATGCGGAGAAGGTAATGAACTTAACAATGC
AATGTTCAGTCTTTCCAACCTCTCACTGGATCCAGCATTATCAGCAGATA
CCATCCCTTCACCAATGCTAGACGTTGGTCTGTCTCGCCTCAACAGTGCA
AACAATGCTAAAGACTTGTTATTTCGACCTGATTCTTCTGGACCCATTGA
AATCGTCTCCAACCTTTTCTTGGGCAACAAAGTGGATGCGTCATCGTTGG
ATTTGTTGAGGAAAGCACGCATCACTCACATACTGAACGTCACGCCAGAC
CTTCCCAATGATTTCACCGAACAGTACCAGTACCTTCGGTTAGCTGTCAA
AGATGATTGGACCGGTTATCTTGCTGATCACTTTGCAGAGGCTTACGATT
TTATTGATAAAGCAATCAAGGAGAATGGTCGTGTATTGGTGCACTGTGTG
GGAGGTATCTCGCGATCCAGTACCATCATCATCGCTTACCTCATGTTGAA
ATACGACTACTCACTCAACAAAGCTTTCGATATGgttaaaatcaagaaaa
caaacaTTGCTCCCAACTTTAATTTCATGGGACAGTTACTCGAATTGGAA
CGCAAGAGACAGGACTCAGCCTCCCTCTATCCTCCAGGAAGCATCAGCCC
AGGTTCATCATCAATTAGTAGTGAGATTTCCACCACTAGCTGCTGACTAA
AGATAGGGGACCAATGACTCATGATGCTTTGTTGTATAGATTCTAGTTAA
CTGTGCTCCGTTTATTGGGCTTGTTTCGTATACATTCGCATCGTTTTGTT
TCATGGAGACTGAAGCTTCAAAGACATTTGAATCACCTATCATCTAAAAT
ACGACAATGTCATTATCTCACTTCGTGTCTGTTTTTAAAGTatttaaagt
gatttttaacGAATCGTTCAATAATTGAAACAATGTTCTTTTTTACTGGA
TGCTAAGTGCTTTTATGTCAGGACTAGGTCAAGTTTCATTTATACTTTAA
TAGGATTAACTTTtgtgagattaaatttcgcgatttcgcgtatttttgcc
attttcgcgaaattaagtcttGCTAAAACGCGTCAGATtgctgactcgcg
aaattaaatccaactGAAATCTCTTTTTCGGTGGAGGAACCAGTCAAAAC
TCTCTATttgtagcaaaaaaaaatggccattttaagcttttttcagactc
attcgtgaaattaaatctacgcgaaatttttcaaaacgctgatttgtgca
gttaaatccagaaaatttcgcgattttttttcttcgagaAATTAAatctc
gcaaaatttaatccgattaaagtattgtCGATTATGTTGACTTAAAATCA
GTACAAACTTTTCGAGTGGAAATGTGATGCCACTTTCGAGTTTGCCAGTA
ACTCGGTCCAGGCTACCTTCAATCATGTTGTAGAATTCCTTTTGATTTCT
CTTGATGAGGTCTCGTTTTTGTACCGTTAATTGCATTGATTTCAAAGTCC
CGGAGGGGAAATGAagtcacttatttcccatctaaaacACGTGACCCGCC
GCTTTGTTTGTCGTTTTCACACAAAGTTTCTAAATACGGACAAATCTTTC
TAGCCCCTTCGgagcttcaaactcaatggctAATTCTTCCCCTCATTTTA
CTCTATATTACTTTATTACACTGTTTCATTTCATCAGTAGAGAACCCTTG
GggtattttttatcttcttcatATGATGTTCTAAACAATGATTgcttatt
taaatttttataccaatttttatTGAACTGTTCTATTTTTCCCTGCAGTT
TTCCGTTAAATTATTATTCTTATATTTTCAAGCTTGTCTCTTTTTGATAG
TTTAACTTAAGTATattttttatagttttatataaaaataatggaatttT
AACCCTTCTTATTGTTGTATATATTCTAGATCATCgatttcattgaaaag
taaACCACTATTTCGAGTGCAATAAACTGCGTTTGTATTTTGCAGACCCT
TTGGCAATAATGCATTTACAACACTCACCATATT
Run BLAST on NCBI

transcript from alignment at scaffold_471:398601..411171+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067578 ID=TCONS_00067578|Name=TCONS_00067578|organism=Clytia hemisphaerica|type=transcript|length=12571bp|location=Sequence derived from alignment at scaffold_471:398601..411171+ (Clytia hemisphaerica)
AGGTgctataaaaataagaaaaaataaagaaaaaaatgatcaCTCCATTG TTCAAGATTCGACAGGACGATGATAACCTTTTCATTGATATATATGCCAA ATTTGTCAAGGTATTATAATTTCCCATAATTCATTCTGTCTGGTcattta tatcttttttttgtttttaagaatttttaagCTGAGGTTCTTTTTAACCT TCATGGTTCTGCGCTTTAATTTAGAGTTTATCTTAACTCTTTGAACAACA TTGGCTTTTCTCAATTTTTAGGCAAACGATGTTGAAATATACGTGGAAGG GAACATGTTTAAATTTTACGTGAAGCCATATTTTCTGAGGTATTTTTTTA TGTTCACTTTACTTTTGTTTGTAACGTATAAAGACATGACCTCATTCCCA GCTCAGATGCTAGCTACAGGCCCCTGGCTTGAGGGCTGAAGTGAGGGGTT CGAATATTGGAATAAATTGACGTTGTCCACCATGGGTGGGTAACagagaa agtttttgaattttgaaattgctaTTCTTGTACCCATTTCGAGTCAATTT GAATGGAAAAATAactgaaagttttcaaaataaccTTTATCGGCAAAAAA TTGAAGGGGGCTATGAGGTATATTGAAGAgtccttattttcttttttcat catcAATTTCAGATTGAATCTACCTGGCAAGCTTTGTGAAGAGTGTGAAG AATCTGGCAAATATGACGTCGGTGAAGGTATATATACCCTTCTTCATTGG TGTTTTTACCAGAGGAAAGAGGATGTATTAGGGAGTTAAgatcttaactt ttttaaaccGTTGAGAGATAGAGATTTGTAAGTTCAATTTCACGGTCTTC ACTGAACATATCTCTTAAAAAAGACATCAGCAAAGATTACActgatattt tgatatttttaaatgatattttttagctTCCATCAGGTGTTTTGAGGATT TTGtgctttgatatttttatgataaACGAATTAGATGGGTCGAATGTGAT AAGGCTTGGTCAATTGCGAAAACTCAAGCAATAGAAGTTTCAACTCTAGT TAGAAACTCTGAGTATAACATAACAGGACAATTTATtttgaagagaaaaa agaataacGAAAAACGTttcgaaaaagaagaagaaacagtttattttctt caattttcactTCTCTGTGAtggataaataaaataaaagaaaaaagttgc aCAGTTCAAAAATTCGACTGTTCGaggaatgtttgaaaaatttgatcggA ATTTGTTTATGGATGAGCTACTGGTCACTCGCTCTTAGGATACACACTGT TTCGTCACGggtctttaaaaaagaaaatcgatttcgttttttaattttta ataatCGGCATACGGTGAATAGCTGCATGATCTCCTCCCAGCCAaatact tttatttactttttctttccaattttctttgaaaatgttattttttatgT ATACCACATGGAGTTCGAGAAGCGATTCATTTCCTGAACACTAAGAGAGT TTCATATAAATTTTTAACTCGCTATAGCTCATTTATAATTTCgctccttt tttttctttcatttctctTTACTTTCTCTCTCAGGAATCTTTCAATTTAA ATTGAAGAAAGCAACACCAGGAGAATTCTTTCAAGATTTGGATATGATAA CGACGTTAATGGCAACCAGAAAGGAACTTCAAATACCTTTAATTGAAGAA ATTAGTACTGGTATAATAAACAAGCGTGTTTCGATAATTCATACTCTCTT CGCTCCCTTATTTCtaaggtatttttttttaaatgaaagaaGGGGGTTAT TGTTGTAGAGGGAATGCTTAGTTAATGTGTGTGGGTGGGTAATACCCTAG TAAGTCTCATTCGGTATTTCACAaattttttgagagggaggacgtgAGTT AGGACATGAGGAAATTTTATGATAAAGAATGTGATGTAATTGTTAAAAAC TGTATCCGTTTAAAGTTagaaaaacttagaaaaacGTCCCTACGTCAATA AGATACGACGTCAAATCGTAATGGGGATGACAGAGAGCTAGTCTTAAAAC GCGGCTGTCTCTTTTTGTGTTTAAGTACGAAAGCTGTTGTATTACATTTC ATGCTCTCTCAGATGGTATCAAACCCGTTTATTTTGCCTGCGTTGTCACA TTTATTCGTCATAAAATATTCCCTGGTACAATCCGCGTCTTCTCTCTTGT CATACCTAATTGAATTCAATTTTAGTTCTATAAACGATGTCACGGGACCC TTTTCTTGTCCCCTACTATAAAAACGAATTTTGCATATAATATTCTGTTA GGCTTATAAAGGATGATACAACGGTTGTAGTTAGGTATTGTTACCTAAAA GCTGGAATGATATTCCCGTATGCTATCGTAAATACGTAACTTCCTTTTTG CGACAATTGTATAAGTCATTTTTCGTACTTGATAGatcttgagaaaaaat tgaaagtaagtGAAGAGGAAGagcatgaagaagaaaaagaagaagaagat tggGATTGGTGTCAACAAACTTCTTCTCAGGTATTCATTCTTCTCTCTAA CGTTCCTTACTCTCCTTCCCTACCTAAACAATGGGAGTGTTTATTCCATC TTCACCTgagattatttcaaaaattggttttgtttttttggcgGATTTTT GTGCATCGAACATGATACCACCACGAACAATCTATTTATTTCGTAAAATA TCTCAAGACAGTGCTTTCCCGTCAAAAGATTTGCCGGGTggttcaaaaaa aacttcggaTCTTTGGTGACGTTTTTAGAGCTAACAAAGTGATAAGTAAG GTCGACCTTGCTCTGTTAAAATTGgggagggtctaaaacttaaaaaattt tgatgtatttttactttttacactCGGACAATCGGTTCAAAAGTTACGAT CACTTTgaatcaaaaatcacttttcaaaaggtgcaaaaaatacgtcaaaa aaggTGATTGAATTTTGTccggtttgttttttctttcgttCTTTTCTTTG ATTCAACCGAACGTACACGCATTTTTACGTAATGTAATCAACTCTACCAT TGAGTATTAAAAGATACCAGAAGGTATTTGCATGTAAAATTaacaattaa aattattttcgggtaaaaatgtattgaaaagaaatgatATTGGTGATGGT GATGATAGTGTGTAAAACTCCTCGTCTTTTCTTACGAAGGACCAGAGAGT GTGGGTTTGTCTTGAGTATGCCTGAGTTAATAACGCTTTTCCCCAAAGAA TCAGTTTTGTATATAGCcttgtgaatatttttttcataaaacattATTAA GACATTTCTGATTCAATCTCGTGtctctttttcattttcgctCATTTTGA AAGCTGATTACTCAAAGAACTACTGAACCAATTTTAAAAAGCAATAACTC AAAACTTAAGTTAGACCTTCCTCTTTCCTATGACGTTAAATTCAAGTTCA TATCTTGATCCATTCTGCTCAAAAGCGTTGCCAAACATCCGaagtttttt ttggaccacccggtaGGTGTTGTAATCGCTTACAAATACGAAGTGCCCTG TATATCAGTATATGTATATGTatgtatttctttttgtttgtatttaTTAT CTGTATATATTTCTTTGCAAGTCAAGTGAAGCTAACATGCACATAATGCA ACATCAATgaaactctttttttttcagaatgtcGAGGATTTAACAGGAAA ATACAAATATGGCTTCGCAAATAGTTTCCAAGATGCCTTGTCCAAATTTC AGGTATGTTCATATAGGTTTTACTCATATTGTGAGTTCCTCTGTAATAAC TCAtccatttttagtattttaaaaatataaacttatttttattttgataa aaattgagaTTTGTTGGTACTTGAATTTTATTCAGTAGGATATCGTTTGT TCGTAGCACCAGGTTTTTGTCCGAAAAACTAACCATGACTAATATGTACA AACGTTTTCATTGAATAGGAGGAGACAGAGGAATTCATCGACATTCCATC ACCGGATACTACTTCTCATGCTGAACGACGGAAACTTCGCATCCATCACG AAAACAACCATTTCAACGTAGAACACTATATGTAAGATTTTTCAATAGTC AATCCTCTTTTCTTTCGATATGAAATAAGCCGGAATAACGATATTGCATT TGTTTTGTGATATCCATTCCAACATCCTGTTTGTATTCCTGCTCGTTAAC AATCGTTCGATTACCACTCTAAAGGAAATACCTccgccattttttttttt ttttgaagttttattttttaagtttatttcACCAATACTAAAGTAGAAAA TATGATAATGGAATTGTGTCTTTTTCCCAAGTTTTTCTCACTTCTTTCCA ATAGAATAATGGTtgctttaaaagttattttagtttTGATCTACGTCAAA CAATCAGGTCAaatcttgtttttgtttttcgaaaatactTTTATGTTTGA GTGAGAAATTCTCCAATTGATGTTTTGACTCCGAACCTCGCCCTTGGCGT TGAAACTCTTTCTACTGTAGTctttcaaactaattttattgTATGAGAAA TAATGCTATTAGAGACAAAACTTTAAAAgctgtttcaaaattttccggAC CTTTTAATACTTATTTTAGGGCGGACTATGTGGAGTGGGATAATATGAGT TCTTTGGTCAACTTTGCACCTCCTTGGCTgtcgaaaatgaaaaatagcgA AGAAAAAAACGAACATTTCGACATGTTGCATTTCacagatgaagaagaaa aaatgttgACTCTTCTACCAAATAAGGATTATATCTTTTTCACCTTTTCA TCGTTAATTGGaaattcttctttcttctctCCTTTCCCTCATCATTTGGT ATTGTTCTTTTTGGTATCTTTCTTTTTGTCTGATGGTACAGTTAAAGGAG TGGGTTACTAACTCGAATTTTATTAACCATCAGGACAGTAGTAGGTTGAA TTGGGTTACTGAAAGAGATTTAGATCACGAGCCTGGGCTTGCTTGAACTT TTTGAAGTTCTTATTTTGTTTCTTACTCACTGAGGTGGTAGCATGAAGAT TTACTGAAAAGGGTATATACCCTTTGTATCTAGATTGTGTTTGAAGTGAC GAAATGTTAATATTTGAAGAGATAAAAAGTCCTTAACAGATTTGATCACA TCTCCTCTCGTCACTGGACGAACGAAAATGTTTACTTTCGCTGGTGGATC TTCTCTTCGCTTATTGTTATGACCACAGGACCACTGAGGGTGAAAACACG GTATGTCGAAATTTCTCCAGCATGCTAGATAATTTAAAAAAGAGTAAGGT TATTGTAGGGAAAAGAGCATTATTGGgctgtaaccccctggaattccccc tggaattctgaattttagtaggatttaaaaagctacccccatggaattcc agttatttttgacagatttttatatctccctatggaattccaccATATAT CAAACATTACGGAAATGGAAATAGACCTCCTCAACAGAGGGTATacgttt ttttctggaaaagcccattgtagtttatacaaacttCATTCTCCAGTGAC agttatcgtattatcatataacacctataTTACCGTATAACACGGttaac gttataaacgactcgTAATGATCAAAACTGACATCAAACTGTGGCtagaa aatgttttgaaaacggCATcgcctttcttttttatagagTGAATCACCTT GGACGATATGCAAGCTGAGCAGCACTCTCTCATGGTTTGATGTAATACTA GAAATTATATGAGTTTGAATTAATACAATTTTTAAGTTGAAAGTAATACT TCATTCCATCATAGTACCGGGTTTACtacatttttttgcataaaagtttt atctttaaaatattCATATGAGAATTCAAACTTAAACATTATTAAGACCG TTCTTTTAGAGTTTTCAAACAATTGATGAAGTGGTGGTCAATTGTTGTCG AAGGGCTTTATGTTATCCACTCTATCGAAACTGGCAACTGATACTCATCA TTTGGAATGATGTCAAAGAGATCATGATGGCAGGTAAAGTATTATTCACT CCATCAAAGGATTAgaacaatcttcaaaaaaatcgaGAGAGGGCTTGACT CATTCTTGAGGACTTTTTCTTAATCAAGGGTTGAGATGATCATTTGAGAG CTTCTAAGGGTTTTGAAGCGTTGGCTAGGTTTTGTTGTCGTGAGGTTTAA ACATCAATTGGGGGTATGTGATTTCCATATATCTTAAAATNTTTTGTTGT CGTGAGGTTTAAACATCAATGGGAATATGTGATTTCCATATACATATCTT AAATTCTTCCTTCGTAGGGAAAGTTTGCATAATAAAATGTTTGTTAGATA TGCGTGGTATTCTAATGAGAGACGAATCGCGATACATTCTCAATGAACTT TACGTCAACCATTACATTGTTTGGGTACAAAAGGTGAGTCTACAACGTCT CTCATCCATCGCAGAAGCATTGAAAGAGAAAGACATTCAGAAAGGAGTGG TTGGGTNACAAAAGGTGAGTCTACAACGTCTCTCATCCATCGCAGAAGCA TTGAAAGAGAAAGACATTCAGAAAGAAGTGGTTGGGTTCAATTTGGAACA GATCGAATCAGTGTTTCTCAATAACAACCAAGATGATATTTCATCTTCTT CAACTTCAACCGAGGAAGATTCATCGAGTGAAGACGAAGAGAGTGACCAA AGCCTCGATTCCGATGATGAACCAACTCCTCCACCTCCTTGATTCGTTCC TAATGCATTGTGGGAAATCATGGGCAAGGTCTGTCCTTGAATATAACCGT CAAAAGAAGTTTGGCGAAAGGGATGCCATTCTACTAGTATTACCATTCCA TCTCTACAAGTACATTCTATAGTGTTTTTACACGTACATACTACTTTTAC ATTAGATTATTTTAGTATCATAGCCCATGTATATTTTCATCGCATCATGC GTACTTTGCATATACATTTCATGTTTACTTTGGAGTAAATCCATAAGCAA ACATCCTTTTCTGAAGTGTTTTTGTTTCACGATGACGTTTGAGTAGAAGT AGATTGAGAAGATGTCACATTGcaaaacctttctttttttactttttttg tcaGCGTAGGATGGGGTTGTCACTAATTATATTCCTTCTGATTatcattt ctttttttgctttctcTCGTCATCAGGACATAGAAATCAGATGGATGTAT TGATTAGTATTGTATTTCCTTTCCATTCATCATTTCTATCTACTAATTGG CTTTGTATACGATTTTCCCCATGATATTGTATAAAGGGGGAAGCAAAAAG TGAATATTCATCCTGTCTTTTTCTCTTGTGTAGCTTATACTCTTTTTGTC TTTATATTATCTTTCTTTTCAGTCAGTCAGCCAGCCTATGAGTTGTAGTG TCACACGACCCTCTATCCATTGATTCTCATTTTTACCCCCCTTACTACAC ATAATATTTACTTTCTAAGCATAGTTTCTCTATGcgctctttttataaga agtaTGAAGCTGGTTGGAAATGAAATAAAACGTACCATATAAGAATGAAA CCAGCTCTGAAATTTAACTTATAACTCCAATACagcaattaaatttttaa aggaTTTCTAGAAAAGGTAGTCAGTGAGATCtatcaaatttataaaaagt gaaaaactaaaaggtttcttataaagaaggaCTGAACCCTGACATATAAT CGTCAACAGGATATTATATTACCATGGTAACTCtgttttgattggcttaa agaTGTCATGATTATGATACATAATTGTctcttttattattttcatttca gtGTGAACAGACAATAGAGCTGACACAAAAAAAATGgaataatcaaaaca aagaaaaaaatagttgGCTTTGGACGACGTCAGATTCTCAGCATGACATT TTTTTCTCCCTTGGTTCGTTGTGTGGTTtcattgaattaaaaaagaagag aaaagaaacgTTAGAACGAAAGATTCACATCAAAccttttgagatttttg gatGGCTCCATTTTGTTTTGTGTAGCAGACGTATTCATTGAGTGATTCTC GAAAGTTGTAAATACATGGTTTTCTGATTTGACGTTCAATATGAATTCCG AGGATGTGCAATGGTTACACACTCAAACATACCAATTCGGTGAAAAGATT TTGATTATAGATTGTCGCACGTTAAATGAATATTCGAAAGGACACATTGA GGGTGCCATTAATTTGTTTGTCCCATCTTTAATGTTGAGACGATTAAAGA AAGGCAACGTACCTTTGAAGAACTTTGTTAATTCTGATATCGCAAAAGAG AAGTTTGAGAATCGATCAAGTTGTGATAAGATTGTTTTATATGATGAATC GTCAACTACCGTCACCGCTGACAGCATTTTGGAAATCTTATCGAAGAAAT TATTGGATGCGCCACCCTTAGTCCATCTGAAAGGTTTGTAGtcttaaaga attttttcataCTGCTCTGATTTTGAAACTGAAATTGATTTATTATTTAC GGAAAGTTATTCTCTTGACTCGATATCCTTTACACCGTGACGTAAACTCT AGATTTCAGATAAACTTCAAAATGGCATTGTATATTACATTCCATTGATC ATACAgtataaattttgataatatttttttctaccgATTTCAGGTGGTTT TCATCATTTCGAGCAAGCATTCCCTCACTTATGTACATGCGGAGAAGGTA ATGAACTTAACAATGCAATGTTCAGTCTTTCCAACCTCTCACTGGATCCA GCATTATCAGCAGATACCATCCCTTCACCAATGCTAGACGTTGGTCTGTC TCGCCTCAACAGTGCAAACAATGCTAAAGACTTGTTATTTCGACCTGATT CTTCTGGACCCATTGAAATCGTCTCCAACCTTTTCTTGGGCAACAAAGTG GATGCGTCATCGTTGGATTTGTTGAGGAAAGCACGCATCACTCACATACT GAACGTCACGCCAGACCTTCCCAATGATTTCACCGAACAGTACCAGTACC TTCGGTTAGCTGTCAAAGATGATTGGACCGGTTATCTTGCTGATCACTTT GCAGAGGCTTACGATTTTATTGGTAAGTGAAAAATCATATTTGAGGCTTa cctttttttaagaacaaactatataagaacataaggcttcggtggccaaa atcttaagaacaagttaagaacattttaagaaaagggTACcacaaatact cacaaaatggtgaaaatgagaacaGGCTTAGAACACATTTTAGGCTTGAT AGCCGAAAAGCTAAGAACGTGTAGTTTAGGTTTCACCAACAAAATTCAAG TGTTTATACCCAAACTACCTTAGTAGGTCAATGGAATGGTAAGGAGATTG TTAAGGAAAGATAAAAGTGATAGAAacgatcaattttttgaatttctcct ATTACGGCAAGGTAATATTGTAGGAATATCATGTTATTGTCAAATGTTGA TGCATATATATATTCTTTAATCAGATAGACACAAACTTAATTGTTTTCAC ACAAAAGTACGAAAtgtataaaaatcaaattagcTCCTTATTATTTAAGT ACTCttcttatcttgacatcaacatggtgatttttttttcttgctaTAAG AGGATTATTTGATAAAACGCGCAGTGCAATTTGATAAATGAATGTTCAAg tgttgtttgtttcttattttgtacaatgtcaaatttcctcgaacaaaaat aaaaagcgaaatgaagaaaaatatttcttttctcaaTGGAGTTTGTCAAA TTGCCTTTATAATTCTTGAAATCATATTTGATGTCAATTATTGAATGATT AATCACCTAGGCAACGGAACAAAAGAACCGGAAATAAAAGGACCTAGCAT TTTCCGCCAAGTCATTAGTTCACTAATTACCCCTCATTTTATTCCATCCT CTCTCATTAGAGGAGATAATCAAATGCCAAAAAAAGTCTTTCTTCCTTCA GATATTGTTTGAAGAAGAATTTTGAAAGCCTTCTTGACCTTTTAAGTTTT AAAtctgaatatgtttttaaaatgttattaatttcaccattttgcgagta tttttgtgcaatgtCCTAAGGAATTTGTTTTTCAGTGGTCataaatatct tataaatatcttttagccatcgaagcattatcatgttcttttatagtttg ttcttatgaaaacaAAACGCATATTAAAAATGCGTATGGTGTAAAATATT ATAATGGCTGActctaaaggcttggggacacgagaagtttttttttgtgt tggtgcaatgcaacatgctctatccgaccaacacaataaaaaaagtgcat gtcccatggtttctttttttgtttcatgggacaaaaagtgagggaaatac ccaaaagacactcTGATTTTGTCTTTGGGACaatgattcgaatcaatttt gctccattgttccagggacaaaagtgagatttcacttttattggtagaaa gaaaaatggagtCGAGCCACGAGAAAGTGCCTCAGGTTGGTGGAATGGAG CATGCTTCATTGCACCAACACGAAACTTCTCGTGTCCACAAGCCTTACAT GTCCATATTAAGTAATAATAAGTCCTCGTGCTCTCTCTTTTTTACGTGAG ACAGGATTGTTGAATCATAAGCGTTTATTCCCACTATGATGGGTGTGTTT TATTGCAAAGAGACTGAGCCAGAATGTCGACTGCGATCGAGAAATGATGA TGTTGATGATGAAGCGTTTTCAATAAAGTATCGTTAGAGGACCTTACACG AGTTTCTAGTCTACCTTCGTCTTAGTATGTAGTGAATATTTTCTTCGTTG AGGCCTTGAAATGTCTACAGTGTGTAGACTAGTGGATTTGTTGTTCAGGT TCTAATACTGTTTTGCTTGTCTCTATTCACCAGATAAAGCAATCAAGGAG AATGGTCGTGTATTGGTGCACTGTGTGGGAGGTATCTCACGATCCAGCNC AATCAAAGAGAATGGTCGTGTATTGGTGCACTGTGTGGGAGGTATCTCGC GATCCAGTACCATCATCATCGCTTACCTCATGTTGAAATACGACTACTCA CTCAACAAAGCTTTCGATATGgttaaaatcaagaaaacaaacaTTGCTCC CAACTTTAATTTCATGGGACAGTTACTCGAATTGGAACGCAAGAGACAGG ACTCAGCCTCCCTCTATCCTCCAGGAAGCATCAGCCCAGGTTCATCATCA ATTAGTAGTGAGATTTCCACCACTAGCTGCTGACTAAAGATAGGGGACCA ATGACTCATGATGCTTTGTTGTATAGATTCTAGTTAACTGTGCTCCGTTT ATTGGGCTTGTTTCGTATACATTCGCATCGTTTTGTTTCATGGAGACTGA AGCTTCAAAGACATTTGAATCACCTATCATCTAAAATACGACAATGTCAT TATCTCACTTCGTGTCTGTTTTTAAAGTatttaaagtgatttttaacGAA TCGTTCAATAATTGAAACAATGTTCTTTTTTACTGGATGCTAAGTGCTTT TATGTCAGGACTAGGTCAAGTTTCATTTATACTTTAATAGGATTAACTTT tgtgagattaaatttcgcgatttcgcgtatttttgccattttcgcgaaat taagtcttGCTAAAACGCGTCAGATtgctgactcgcgaaattaaatccaa ctGAAATCTCTTTTTCGGTGGAGGAACCAGTCAAAACTCTCTATttgtag caaaaaaaaatggccattttaagcttttttcagactcattcgtgaaatta aatctacgcgaaatttttcaaaacgctgatttgtgcagttaaatccagaa aatttcgcgattttttttcttcgagaAATTAAatctcgcaaaatttaatc cgattaaagtattgtCGATTATGTTGACTTAAAATCAGTACAAACTTTTC GAGTGGAAATGTGATGCCACTTTCGAGTTTGCCAGTAACTCGGTCCAGGC TACCTTCAATCATGTTGTAGAATTCCTTTTGATTTCTCTTGATGAGGTCT CGTTTTTGTACCGTTAATTGCATTGATTTCAAAGTCCCGGAGGGGAAATG AagtcacttatttcccatctaaaacACGTGACCCGCCGCTTTGTTTGTCG TTTTCACACAAAGTTTCTAAATACGGACAAATCTTTCTAGCCCCTTCGga gcttcaaactcaatggctAATTCTTCCCCTCATTTTACTCTATATTACTT TATTACACTGTTTCATTTCATCAGTAGAGAACCCTTGGggtattttttat cttcttcatATGATGTTCTAAACAATGATTgcttatttaaatttttatac caatttttatTGAACTGTTCTATTTTTCCCTGCAGTTTTCCGTTAAATTA TTATTCTTATATTTTCAAGCTTGTCTCTTTTTGATAGTTTAACTTAAGTA TattttttatagttttatataaaaataatggaatttTAACCCTTCTTATT GTTGTATATATTCTAGATCATCgatttcattgaaaagtaaACCACTATTT CGAGTGCAATAAACTGCGTTTGTATTTTGCAGACCCTTTGGCAATAATGC ATTTACAACACTCACCATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042200XLOC_042200Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067578-exon-scaffold_471-1491911889:398601..398710TCONS_00067578-exon-scaffold_471-1491911889:398601..398710Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:398601..398710TCONS_00067578-exon-scaffold_471-1510915933:398601..398710Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:398601..398710TCONS_00067578-exon-scaffold_471-1575043694:398601..398710Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:398872..398939TCONS_00067578-exon-scaffold_471-1491911889:398872..398939Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:398872..398939TCONS_00067578-exon-scaffold_471-1510915933:398872..398939Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:398872..398939TCONS_00067578-exon-scaffold_471-1575043694:398872..398939Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:399263..399327TCONS_00067578-exon-scaffold_471-1491911889:399263..399327Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:399263..399327TCONS_00067578-exon-scaffold_471-1510915933:399263..399327Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:399263..399327TCONS_00067578-exon-scaffold_471-1575043694:399263..399327Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:400185..400310TCONS_00067578-exon-scaffold_471-1491911889:400185..400310Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:400185..400310TCONS_00067578-exon-scaffold_471-1510915933:400185..400310Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:400185..400310TCONS_00067578-exon-scaffold_471-1575043694:400185..400310Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:401036..401130TCONS_00067578-exon-scaffold_471-1491911889:401036..401130Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:401036..401130TCONS_00067578-exon-scaffold_471-1510915933:401036..401130Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:401036..401130TCONS_00067578-exon-scaffold_471-1575043694:401036..401130Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:402278..402352TCONS_00067578-exon-scaffold_471-1491911889:402278..402352Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:402278..402352TCONS_00067578-exon-scaffold_471-1510915933:402278..402352Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:402278..402352TCONS_00067578-exon-scaffold_471-1575043694:402278..402352Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:402569..402681TCONS_00067578-exon-scaffold_471-1491911889:402569..402681Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:402569..402681TCONS_00067578-exon-scaffold_471-1510915933:402569..402681Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:402569..402681TCONS_00067578-exon-scaffold_471-1575043694:402569..402681Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:403220..403380TCONS_00067578-exon-scaffold_471-1491911889:403220..403380Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:403220..403380TCONS_00067578-exon-scaffold_471-1510915933:403220..403380Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:403220..403380TCONS_00067578-exon-scaffold_471-1575043694:403220..403380Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:403750..403850TCONS_00067578-exon-scaffold_471-1491911889:403750..403850Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:403750..403850TCONS_00067578-exon-scaffold_471-1510915933:403750..403850Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:403750..403850TCONS_00067578-exon-scaffold_471-1575043694:403750..403850Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:404288..404341TCONS_00067578-exon-scaffold_471-1491911889:404288..404341Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:404288..404341TCONS_00067578-exon-scaffold_471-1510915933:404288..404341Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:404288..404341TCONS_00067578-exon-scaffold_471-1575043694:404288..404341Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:404510..404633TCONS_00067578-exon-scaffold_471-1491911889:404510..404633Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:404510..404633TCONS_00067578-exon-scaffold_471-1510915933:404510..404633Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:404510..404633TCONS_00067578-exon-scaffold_471-1575043694:404510..404633Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:404918..405033TCONS_00067578-exon-scaffold_471-1491911889:404918..405033Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:404918..405033TCONS_00067578-exon-scaffold_471-1510915933:404918..405033Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:404918..405033TCONS_00067578-exon-scaffold_471-1575043694:404918..405033Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:405115..407033TCONS_00067578-exon-scaffold_471-1491911889:405115..407033Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:405115..407033TCONS_00067578-exon-scaffold_471-1510915933:405115..407033Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:405115..407033TCONS_00067578-exon-scaffold_471-1575043694:405115..407033Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:407244..407672TCONS_00067578-exon-scaffold_471-1491911889:407244..407672Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:407244..407672TCONS_00067578-exon-scaffold_471-1510915933:407244..407672Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:407244..407672TCONS_00067578-exon-scaffold_471-1575043694:407244..407672Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:409484..409531TCONS_00067578-exon-scaffold_471-1491911889:409484..409531Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:409484..409531TCONS_00067578-exon-scaffold_471-1510915933:409484..409531Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:409484..409531TCONS_00067578-exon-scaffold_471-1575043694:409484..409531Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1491911889:409592..411171TCONS_00067578-exon-scaffold_471-1491911889:409592..411171Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1510915933:409592..411171TCONS_00067578-exon-scaffold_471-1510915933:409592..411171Clytia hemisphaericaexon
TCONS_00067578-exon-scaffold_471-1575043694:409592..411171TCONS_00067578-exon-scaffold_471-1575043694:409592..411171Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_471supercontigscaffold_471:398601..411171 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97281 0.333373 3.01578 2.04854 15.019 3.02662 15.2964 24.3157 8.95003 12.305 4.27824 13.4417 13.1388 9.56828 2.77477 4.32009 4.65765 2.71951 2.85421 5.38622 0.869581 0.0853605 2.71137 0.675745 0.684643 0.58551 12.5355 12.8572 6.26315 7.2921
Blast
BLAST of TCONS_00067578 vs. Swiss-Prot (Human)
Match: SHQ1 (Protein SHQ1 homolog OS=Homo sapiens GN=SHQ1 PE=1 SV=2)

HSP 1 Score: 319.701 bits (818), Expect = 3.995e-94
Identity = 169/422 (40.05%), Postives = 254/422 (60.19%), Query Frame = 3
Query:   36 MITPLFKIRQDDDNLFIDIYAKFVKANDVEIYVEGNMFKFYVKPYFLRLNLPGKLCEECEESGKYDVGEGIFQFKLKKATPGEFFQDLDMITTLMATRKELQI-PLIEEISTDLXXXXXXXXXXXXXXXXXXXDWDW-CQQTSSQNVED--LTGKYKYGFANSFQDALSKFQEETEEFIDIPSPDTTSHAERRKLRIHHENNHFNVEHYMADYVEWDNMSSLVNFAPPWLSK-------MKNSEEKNEHFDMLHFTDEEEKMLTLLPNKDYLLSSLDERKCLLSLVDLLFAYCYDHRTTEGENTSESPWTICKLSSTLSWFDSFQTIDEVVVNCCRRALCYPLYRNWQLILIIWNDVKEIMMAGKVCIIKCLLDMRGILMRDESRYILNELYVNHYIVWVQKVSLQRLSSIAEALKEKDIQK 1268
            M+TP F + QD D L I I   + + ++ ++Y EG+ FKFY KPYFLRL LPG++ E   E G YD  +GIF  +L K TPG+ F+ L+M+T L+A RK     PL+EEI             E  EE  ++E++DW  +QT  + V +  L  +  YGF N     L + Q+E  + IDI  PD T  AERR+ R+  E   F+ +HY+AD+ E + +  ++ + P W  K       ++ S+E+  H  ++ F++EE+  L    NK YLL     R+   SL+D+L AYCY+ R TEGE   ES W I KLS TL WF+++  + +++V+  RR LCYPLYR+++L++  + D  +I+  GK  ++KCLLD+  I   ++  YILN+LY++ Y VW+QKV  ++L+++AEALKE  + K
Sbjct:    1 MLTPAFDLSQDPDFLTIAIRVPYARVSEFDVYFEGSDFKFYAKPYFLRLTLPGRIVENGSEQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPRKSRTAKPLVEEIGAS----------EIPEEVVDDEEFDWEIEQTPCEEVSESALNPQCHYGFGNLRSGVLQRLQDELSDVIDIKDPDFTPAAERRQKRLAAELAKFDPDHYLADFFEDEAIEQILKYNPWWTDKYSKMMAFLEKSQEQENHATLVSFSEEEKYQLRKFVNKSYLLDKRACRQVCYSLIDILLAYCYETRVTEGEKNVESAWNIRKLSPTLCWFETWTNVHDIMVSFGRRVLCYPLYRHFKLVMKAYRDTIKILQLGKSAVLKCLLDIHKIFQENDPAYILNDLYISDYCVWIQKVKSKKLAALAEALKEVSLTK 412          
The following BLAST results are available for this feature:
BLAST of TCONS_00067578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SHQ13.995e-9440.05Protein SHQ1 homolog OS=Homo sapiens GN=SHQ1 PE=1 ... [more]
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