TCONS_00067576 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067576
Unique Name	TCONS_00067576
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	5324

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_471:397700..411171+

transcript sequence

>TCONS_00067576 ID=TCONS_00067576|Name=TCONS_00067576|organism=Clytia hemisphaerica|type=transcript|length=5324bp
AGGTgctataaaaataagaaaaagtcaAGGAAAAAAATGATCACTCCATT
GTTCAAGATTCGTCAGGACGATGATAACCTTTTAATTGATATATATGCCA
AATTTGTCAAGGCAAACGATGTTGAAATATACGTGGAAGGGAACATGTTT
AAATTTTACGTGAAGCCATATTTTCTGAGATTGAATCTACCTGGCAAGCT
TTGTGAAGAGTGTGAAGAATCTGGCAAATATGACGTCGGTGAAGGAATCT
TTCAATTTAAATTGAAGAAAGCAACACCAGGAGAATTCTTTCAAGATTTG
GATATGATAACGACGTTAATGGCAACCAGAAAGGAACTTCAAATACCTTT
AATTGAAGAAATTAGTACTGGTATAATAAACAAGCGTGTTTCGATAATTC
ATACTCTCTTCGCTCCCTTATTTCtaagatcttgagaaaaaattgaaagt
aagtGAAGAGGAAGagcatgaagaagaaaaagaagaagaagattggGATT
GGTGTCAACAAACTTCTTCTCAGaatgtcGAGGATTTAACAGGAAAATAC
AAATATGGCTTCGCAAATAGTTTCCAAGATGCCTTGTCCAAATTTCAGGA
GGAGACAGAGGAATTCATCGACATTCCATCACCGGATACTACTTCTCATG
CTGAACGACGGAAACTTCGCATCCATCACGAAAACAACCATTTCAACGTA
GAACACTATATGGCGGACTATGTGGAGTGGGATAATATGAGTTCTTTGGT
CAACTTTGCACCTCCTTGGCTgtcgaaaatgaaaaatagcgAAGAAAAAA
ACGAACATTTCGACATGTTGCATTTCacagatgaagaagaaaaaatgttg
ACTCTTCTACCAAATAAGGATTATCTCCTCTCGTCACTGGACGAACGAAA
ATGTTTACTTTCGCTGGTGGATCTTCTCTTCGCTTATTGTTATGACCACA
GGACCACTGAGGGTGAAAACACGagTGAATCACCTTGGACGATATGCAAG
CTGAGCAGCACTCTCTCATGGTTTGATAGTTTTCAAACAATTGATGAAGT
GGTGGTCAATTGTTGTCGAAGGGCTTTATGTTATCCACTCTATCGAAACT
GGCAACTGATACTCATCATTTGGAATGATGTCAAAGAGATCATGATGGCA
GGGAAAGTTTGCATAATAAAATGTTTGTTAGATATGCGTGGTATTCTAAT
GAGAGACGAATCGCGATACATTCTCAATGAACTTTACGTCAACCATTACA
TTGTTTGGGTACAAAAGGTGAGTCTACAACGTCTCTCATCCATCGCAGAA
GCATTGAAAGAGAAAGACATTCAGAAAGGAGTGGTTGGGTNACAAAAGGT
GAGTCTACAACGTCTCTCATCCATCGCAGAAGCATTGAAAGAGAAAGACA
TTCAGAAAGAAGTGGTTGGGTTCAATTTGGAACAGATCGAATCAGTGTTT
CTCAATAACAACCAAGATGATATTTCATCTTCTTCAACTTCAACCGAGGA
AGATTCATCGAGTGAAGACGAAGAGAGTGACCAAAGCCTCGATTCCGATG
ATGAACCAACTCCTCCACCTCCTTGATTCGTTCCTAATGCATTGTGGGAA
ATCATGGGCAAGGTCTGTCCTTGAATATAACCGTCAAAAGAAGTTTGGCG
AAAGGGATGCCATTCTACTAGTATTACCATTCCATCTCTACAAGTACATT
CTATAGTGTTTTTACACGTACATACTACTTTTACATTAGATTATTTTAGT
ATCATAGCCCATGTATATTTTCATCGCATCATGCGTACTTTGCATATACA
TTTCATGTTTACTTTGGAGTAAATCCATAAGCAAACATCCTTTTCTGAAG
TGTTTTTGTTTCACGATGACGTTTGAGTAGAAGTAGATTGAGAAGATGTC
ACATTGcaaaacctttctttttttactttttttgtcaGCGTAGGATGGGG
TTGTCACTAATTATATTCCTTCTGATTatcatttctttttttgctttctc
TCGTCATCAGGACATAGAAATCAGATGGATGTATTGATTAGTATTGTATT
TCCTTTCCATTCATCATTTCTATCTACTAATTGGCTTTGTATACGATTTT
CCCCATGATATTGTATAAAGGGGGAAGCAAAAAGTGAATATTCATCCTGT
CTTTTTCTCTTGTGTAGCTTATACTCTTTTTGTCTTTATATTATCTTTCT
TTTCAGTCAGTCAGCCAGCCTATGAGTTGTAGTGTCACACGACCCTCTAT
CCATTGATTCTCATTTTTACCCCCCTTACTACACATAATATTTACTTTCT
AAGCATAGTTTCTCTATGcgctctttttataagaagtaTGAAGCTGGTTG
GAAATGAAATAAAACGTACCATATAAGAATGAAACCAGCTCTGAAATTTA
ACTTATAACTCCAATACagcaattaaatttttaaaggaTTTCTAGAAAAG
GTAGTCAGTGAGATCtatcaaatttataaaaagtgaaaaactaaaaggtt
tcttataaagaaggaCTGAACCCTGACATATAATCGTCAACAGGATATTA
TATTACCATGGTAACTCtgttttgattggcttaaagaTGTCATGATTATG
ATACATAATTGTctcttttattattttcatttcagtGTGAACAGACAATA
GAGCTGACACAAAAAAAATGgaataatcaaaacaaagaaaaaaatagttg
GCTTTGGACGACGTCAGATTCTCAGCATGACATTTTTTTCTCCCTTGGTT
CGTTGTGTGGTTtcattgaattaaaaaagaagagaaaagaaacgTTAGAA
CGAAAGATTCACATCAAAccttttgagatttttggatGGCTCCATTTTGT
TTTGTGTAGCAGACGTATTCATTGAGTGATTCTCGAAAGTTGTAAATACA
TGGTTTTCTGATTTGACGTTCAATATGAATTCCGAGGATGTGCAATGGTT
ACACACTCAAACATACCAATTCGGTGAAAAGATTTTGATTATAGATTGTC
GCACGTTAAATGAATATTCGAAAGGACACATTGAGGGTGCCATTAATTTG
TTTGTCCCATCTTTAATGTTGAGACGATTAAAGAAAGGCAACGTACCTTT
GAAGAACTTTGTTAATTCTGATATCGCAAAAGAGAAGTTTGAGAATCGAT
CAAGTTGTGATAAGATTGTTTTATATGATGAATCGTCAACTACCGTCACC
GCTGACAGCATTTTGGAAATCTTATCGAAGAAATTATTGGATGCGCCACC
CTTAGTCCATCTGAAAGGTGGTTTTCATCATTTCGAGCAAGCATTCCCTC
ACTTATGTACATGCGGAGAAGGTAATGAACTTAACAATGCAATGTTCAGT
CTTTCCAACCTCTCACTGGATCCAGCATTATCAGCAGATACCATCCCTTC
ACCAATGCTAGACGTTGGTCTGTCTCGCCTCAACAGTGCAAACAATGCTA
AAGACTTGTTATTTCGACCTGATTCTTCTGGACCCATTGAAATCGTCTCC
AACCTTTTCTTGGGCAACAAAGTGGATGCGTCATCGTTGGATTTGTTGAG
GAAAGCACGCATCACTCACATACTGAACGTCACGCCAGACCTTCCCAATG
ATTTCACCGAACAGTACCAGTACCTTCGGTTAGCTGTCAAAGATGATTGG
ACCGGTTATCTTGCTGATCACTTTGCAGAGGCTTACGATTTTATTGATAA
AGCAATCAAGGAGAATGGTCGTGTATTGGTGCACTGTGTGGGAGGTATCT
CGCGATCCAGTACCATCATCATCGCTTACCTCATGTTGAAATACGACTAC
TCACTCAACAAAGCTTTCGATATGgttaaaatcaagaaaacaaacaTTGC
TCCCAACTTTAATTTCATGGGACAGTTACTCGAATTGGAACGCAAGAGAC
AGGACTCAGCCTCCCTCTATCCTCCAGGAAGCATCAGCCCAGGTTCATCA
TCAATTAGTAGTGAGATTTCCACCACTAGCTGCTGACTAAAGATAGGGGA
CCAATGACTCATGATGCTTTGTTGTATAGATTCTAGTTAACTGTGCTCCG
TTTATTGGGCTTGTTTCGTATACATTCGCATCGTTTTGTTTCATGGAGAC
TGAAGCTTCAAAGACATTTGAATCACCTATCATCTAAAATACGACAATGT
CATTATCTCACTTCGTGTCTGTTTTTAAAGTatttaaagtgatttttaac
GAATCGTTCAATAATTGAAACAATGTTCTTTTTTACTGGATGCTAAGTGC
TTTTATGTCAGGACTAGGTCAAGTTTCATTTATACTTTAATAGGATTAAC
TTTtgtgagattaaatttcgcgatttcgcgtatttttgccattttcgcga
aattaagtcttGCTAAAACGCGTCAGATtgctgactcgcgaaattaaatc
caactGAAATCTCTTTTTCGGTGGAGGAACCAGTCAAAACTCTCTATttg
tagcaaaaaaaaatggccattttaagcttttttcagactcattcgtgaaa
ttaaatctacgcgaaatttttcaaaacgctgatttgtgcagttaaatcca
gaaaatttcgcgattttttttcttcgagaAATTAAatctcgcaaaattta
atccgattaaagtattgtCGATTATGTTGACTTAAAATCAGTACAAACTT
TTCGAGTGGAAATGTGATGCCACTTTCGAGTTTGCCAGTAACTCGGTCCA
GGCTACCTTCAATCATGTTGTAGAATTCCTTTTGATTTCTCTTGATGAGG
TCTCGTTTTTGTACCGTTAATTGCATTGATTTCAAAGTCCCGGAGGGGAA
ATGAagtcacttatttcccatctaaaacACGTGACCCGCCGCTTTGTTTG
TCGTTTTCACACAAAGTTTCTAAATACGGACAAATCTTTCTAGCCCCTTC
GgagcttcaaactcaatggctAATTCTTCCCCTCATTTTACTCTATATTA
CTTTATTACACTGTTTCATTTCATCAGTAGAGAACCCTTGGggtattttt
tatcttcttcatATGATGTTCTAAACAATGATTgcttatttaaattttta
taccaatttttatTGAACTGTTCTATTTTTCCCTGCAGTTTTCCGTTAAA
TTATTATTCTTATATTTTCAAGCTTGTCTCTTTTTGATAGTTTAACTTAA
GTATattttttatagttttatataaaaataatggaatttTAACCCTTCTT
ATTGTTGTATATATTCTAGATCATCgatttcattgaaaagtaaACCACTA
TTTCGAGTGCAATAAACTGCGTTTGTATTTTGCAGACCCTTTGGCAATAA
TGCATTTACAACACTCACCATATT

Run BLAST on NCBI

transcript from alignment at scaffold_471:397700..411171+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067576 ID=TCONS_00067576|Name=TCONS_00067576|organism=Clytia hemisphaerica|type=transcript|length=13472bp|location=Sequence derived from alignment at scaffold_471:397700..411171+ (Clytia hemisphaerica)
AGGTgctataaaaataagaaaaagtcaAGGAAAAAAATGATCACTCCATT
GTTCAAGATTCGTCAGGACGATGATAACCTTTTAATTGATATATATGCCA
AATTTGTCAAGGTATTATAATTTCCCATAATTCCCTCTGGTCTcgtcatt
aatatttttttttgtctttataagaatatttaagcTGAGGTTCTTTTTAA
CCTTTCTGCGCTTTATTTAGAGTTTATCTTGGTAAAGGTTTTGGGTCTCT
AATGCAGGTAACTCTCTTTGAACAACATTGGCTTTTCTCAATTTTTAGGC
AAACGATGTTGAAATATACGTGGAAGGGAACATGTTTAAATTTTACGTGA
AGCCATATTTTCTGAGGTATTTTTTTATGTTCACTTTACTTTTGTTTGTA
ACGTATAAAGACATGATCTCATTCCCAGATCAGATGCTAGGNGGCACATC
ATCCACCGCAGCTCAATGTTGAAAAATTCTTACTCAGCATAAGAAATGAT
TTGTTTTTTAAGTCTGTTTGCTATACAtttttatttgtcttttttaaata
atttatatatatatttggATTTATAATTATTTGGTGTAAATTTTTGGTAA
TCACATTAAGAATTGTAGTCATCTTACAAAGGGTATTGTATATCCGTAGA
AAATATATCTACTTTGACAACTGAGTATGGGTTACTTAAAGAGATGAACA
AGGAATACTCCTCGccttttgattttgtattttgcCTTTTGGAACTCAAG
TCTTCAATTAGATTAacattttaaaatacttgcaaaGTTGAATATTATCA
ACAGAAAATATACCCATATTTACGAACAGACTTATAGtggtttattatta
ttattctgcAGTATTTTATATGCTTAAACTACAGAGTATGCATTTTTTTC
CAGGTgctataaaaataagaaaaaataaagaaaaaaatgatcaCTCCATT
GTTCAAGATTCGACAGGACGATGATAACCTTTTCATTGATATATATGCCA
AATTTGTCAAGGTATTATAATTTCCCATAATTCATTCTGTCTGGTcattt
atatcttttttttgtttttaagaatttttaagCTGAGGTTCTTTTTAACC
TTCATGGTTCTGCGCTTTAATTTAGAGTTTATCTTAACTCTTTGAACAAC
ATTGGCTTTTCTCAATTTTTAGGCAAACGATGTTGAAATATACGTGGAAG
GGAACATGTTTAAATTTTACGTGAAGCCATATTTTCTGAGGTATTTTTTT
ATGTTCACTTTACTTTTGTTTGTAACGTATAAAGACATGACCTCATTCCC
AGCTCAGATGCTAGCTACAGGCCCCTGGCTTGAGGGCTGAAGTGAGGGGT
TCGAATATTGGAATAAATTGACGTTGTCCACCATGGGTGGGTAACagaga
aagtttttgaattttgaaattgctaTTCTTGTACCCATTTCGAGTCAATT
TGAATGGAAAAATAactgaaagttttcaaaataaccTTTATCGGCAAAAA
ATTGAAGGGGGCTATGAGGTATATTGAAGAgtccttattttcttttttca
tcatcAATTTCAGATTGAATCTACCTGGCAAGCTTTGTGAAGAGTGTGAA
GAATCTGGCAAATATGACGTCGGTGAAGGTATATATACCCTTCTTCATTG
GTGTTTTTACCAGAGGAAAGAGGATGTATTAGGGAGTTAAgatcttaact
tttttaaaccGTTGAGAGATAGAGATTTGTAAGTTCAATTTCACGGTCTT
CACTGAACATATCTCTTAAAAAAGACATCAGCAAAGATTACActgatatt
ttgatatttttaaatgatattttttagctTCCATCAGGTGTTTTGAGGAT
TTTGtgctttgatatttttatgataaACGAATTAGATGGGTCGAATGTGA
TAAGGCTTGGTCAATTGCGAAAACTCAAGCAATAGAAGTTTCAACTCTAG
TTAGAAACTCTGAGTATAACATAACAGGACAATTTATtttgaagagaaaa
aagaataacGAAAAACGTttcgaaaaagaagaagaaacagtttattttct
tcaattttcactTCTCTGTGAtggataaataaaataaaagaaaaaagttg
caCAGTTCAAAAATTCGACTGTTCGaggaatgtttgaaaaatttgatcgg
AATTTGTTTATGGATGAGCTACTGGTCACTCGCTCTTAGGATACACACTG
TTTCGTCACGggtctttaaaaaagaaaatcgatttcgttttttaattttt
aataatCGGCATACGGTGAATAGCTGCATGATCTCCTCCCAGCCAaatac
ttttatttactttttctttccaattttctttgaaaatgttattttttatg
TATACCACATGGAGTTCGAGAAGCGATTCATTTCCTGAACACTAAGAGAG
TTTCATATAAATTTTTAACTCGCTATAGCTCATTTATAATTTCgctcctt
ttttttctttcatttctctTTACTTTCTCTCTCAGGAATCTTTCAATTTA
AATTGAAGAAAGCAACACCAGGAGAATTCTTTCAAGATTTGGATATGATA
ACGACGTTAATGGCAACCAGAAAGGAACTTCAAATACCTTTAATTGAAGA
AATTAGTACTGGTATAATAAACAAGCGTGTTTCGATAATTCATACTCTCT
TCGCTCCCTTATTTCtaaggtatttttttttaaatgaaagaaGGGGGTTA
TTGTTGTAGAGGGAATGCTTAGTTAATGTGTGTGGGTGGGTAATACCCTA
GTAAGTCTCATTCGGTATTTCACAaattttttgagagggaggacgtgAGT
TAGGACATGAGGAAATTTTATGATAAAGAATGTGATGTAATTGTTAAAAA
CTGTATCCGTTTAAAGTTagaaaaacttagaaaaacGTCCCTACGTCAAT
AAGATACGACGTCAAATCGTAATGGGGATGACAGAGAGCTAGTCTTAAAA
CGCGGCTGTCTCTTTTTGTGTTTAAGTACGAAAGCTGTTGTATTACATTT
CATGCTCTCTCAGATGGTATCAAACCCGTTTATTTTGCCTGCGTTGTCAC
ATTTATTCGTCATAAAATATTCCCTGGTACAATCCGCGTCTTCTCTCTTG
TCATACCTAATTGAATTCAATTTTAGTTCTATAAACGATGTCACGGGACC
CTTTTCTTGTCCCCTACTATAAAAACGAATTTTGCATATAATATTCTGTT
AGGCTTATAAAGGATGATACAACGGTTGTAGTTAGGTATTGTTACCTAAA
AGCTGGAATGATATTCCCGTATGCTATCGTAAATACGTAACTTCCTTTTT
GCGACAATTGTATAAGTCATTTTTCGTACTTGATAGatcttgagaaaaaa
ttgaaagtaagtGAAGAGGAAGagcatgaagaagaaaaagaagaagaaga
ttggGATTGGTGTCAACAAACTTCTTCTCAGGTATTCATTCTTCTCTCTA
ACGTTCCTTACTCTCCTTCCCTACCTAAACAATGGGAGTGTTTATTCCAT
CTTCACCTgagattatttcaaaaattggttttgtttttttggcgGATTTT
TGTGCATCGAACATGATACCACCACGAACAATCTATTTATTTCGTAAAAT
ATCTCAAGACAGTGCTTTCCCGTCAAAAGATTTGCCGGGTggttcaaaaa
aaacttcggaTCTTTGGTGACGTTTTTAGAGCTAACAAAGTGATAAGTAA
GGTCGACCTTGCTCTGTTAAAATTGgggagggtctaaaacttaaaaaatt
ttgatgtatttttactttttacactCGGACAATCGGTTCAAAAGTTACGA
TCACTTTgaatcaaaaatcacttttcaaaaggtgcaaaaaatacgtcaaa
aaaggTGATTGAATTTTGTccggtttgttttttctttcgttCTTTTCTTT
GATTCAACCGAACGTACACGCATTTTTACGTAATGTAATCAACTCTACCA
TTGAGTATTAAAAGATACCAGAAGGTATTTGCATGTAAAATTaacaatta
aaattattttcgggtaaaaatgtattgaaaagaaatgatATTGGTGATGG
TGATGATAGTGTGTAAAACTCCTCGTCTTTTCTTACGAAGGACCAGAGAG
TGTGGGTTTGTCTTGAGTATGCCTGAGTTAATAACGCTTTTCCCCAAAGA
ATCAGTTTTGTATATAGCcttgtgaatatttttttcataaaacattATTA
AGACATTTCTGATTCAATCTCGTGtctctttttcattttcgctCATTTTG
AAAGCTGATTACTCAAAGAACTACTGAACCAATTTTAAAAAGCAATAACT
CAAAACTTAAGTTAGACCTTCCTCTTTCCTATGACGTTAAATTCAAGTTC
ATATCTTGATCCATTCTGCTCAAAAGCGTTGCCAAACATCCGaagttttt
tttggaccacccggtaGGTGTTGTAATCGCTTACAAATACGAAGTGCCCT
GTATATCAGTATATGTATATGTatgtatttctttttgtttgtatttaTTA
TCTGTATATATTTCTTTGCAAGTCAAGTGAAGCTAACATGCACATAATGC
AACATCAATgaaactctttttttttcagaatgtcGAGGATTTAACAGGAA
AATACAAATATGGCTTCGCAAATAGTTTCCAAGATGCCTTGTCCAAATTT
CAGGTATGTTCATATAGGTTTTACTCATATTGTGAGTTCCTCTGTAATAA
CTCAtccatttttagtattttaaaaatataaacttatttttattttgata
aaaattgagaTTTGTTGGTACTTGAATTTTATTCAGTAGGATATCGTTTG
TTCGTAGCACCAGGTTTTTGTCCGAAAAACTAACCATGACTAATATGTAC
AAACGTTTTCATTGAATAGGAGGAGACAGAGGAATTCATCGACATTCCAT
CACCGGATACTACTTCTCATGCTGAACGACGGAAACTTCGCATCCATCAC
GAAAACAACCATTTCAACGTAGAACACTATATGTAAGATTTTTCAATAGT
CAATCCTCTTTTCTTTCGATATGAAATAAGCCGGAATAACGATATTGCAT
TTGTTTTGTGATATCCATTCCAACATCCTGTTTGTATTCCTGCTCGTTAA
CAATCGTTCGATTACCACTCTAAAGGAAATACCTccgccatttttttttt
tttttgaagttttattttttaagtttatttcACCAATACTAAAGTAGAAA
ATATGATAATGGAATTGTGTCTTTTTCCCAAGTTTTTCTCACTTCTTTCC
AATAGAATAATGGTtgctttaaaagttattttagtttTGATCTACGTCAA
ACAATCAGGTCAaatcttgtttttgtttttcgaaaatactTTTATGTTTG
AGTGAGAAATTCTCCAATTGATGTTTTGACTCCGAACCTCGCCCTTGGCG
TTGAAACTCTTTCTACTGTAGTctttcaaactaattttattgTATGAGAA
ATAATGCTATTAGAGACAAAACTTTAAAAgctgtttcaaaattttccggA
CCTTTTAATACTTATTTTAGGGCGGACTATGTGGAGTGGGATAATATGAG
TTCTTTGGTCAACTTTGCACCTCCTTGGCTgtcgaaaatgaaaaatagcg
AAGAAAAAAACGAACATTTCGACATGTTGCATTTCacagatgaagaagaa
aaaatgttgACTCTTCTACCAAATAAGGATTATATCTTTTTCACCTTTTC
ATCGTTAATTGGaaattcttctttcttctctCCTTTCCCTCATCATTTGG
TATTGTTCTTTTTGGTATCTTTCTTTTTGTCTGATGGTACAGTTAAAGGA
GTGGGTTACTAACTCGAATTTTATTAACCATCAGGACAGTAGTAGGTTGA
ATTGGGTTACTGAAAGAGATTTAGATCACGAGCCTGGGCTTGCTTGAACT
TTTTGAAGTTCTTATTTTGTTTCTTACTCACTGAGGTGGTAGCATGAAGA
TTTACTGAAAAGGGTATATACCCTTTGTATCTAGATTGTGTTTGAAGTGA
CGAAATGTTAATATTTGAAGAGATAAAAAGTCCTTAACAGATTTGATCAC
ATCTCCTCTCGTCACTGGACGAACGAAAATGTTTACTTTCGCTGGTGGAT
CTTCTCTTCGCTTATTGTTATGACCACAGGACCACTGAGGGTGAAAACAC
GGTATGTCGAAATTTCTCCAGCATGCTAGATAATTTAAAAAAGAGTAAGG
TTATTGTAGGGAAAAGAGCATTATTGGgctgtaaccccctggaattcccc
ctggaattctgaattttagtaggatttaaaaagctacccccatggaattc
cagttatttttgacagatttttatatctccctatggaattccaccATATA
TCAAACATTACGGAAATGGAAATAGACCTCCTCAACAGAGGGTATacgtt
tttttctggaaaagcccattgtagtttatacaaacttCATTCTCCAGTGA
CagttatcgtattatcatataacacctataTTACCGTATAACACGGttaa
cgttataaacgactcgTAATGATCAAAACTGACATCAAACTGTGGCtaga
aaatgttttgaaaacggCATcgcctttcttttttatagagTGAATCACCT
TGGACGATATGCAAGCTGAGCAGCACTCTCTCATGGTTTGATGTAATACT
AGAAATTATATGAGTTTGAATTAATACAATTTTTAAGTTGAAAGTAATAC
TTCATTCCATCATAGTACCGGGTTTACtacatttttttgcataaaagttt
tatctttaaaatattCATATGAGAATTCAAACTTAAACATTATTAAGACC
GTTCTTTTAGAGTTTTCAAACAATTGATGAAGTGGTGGTCAATTGTTGTC
GAAGGGCTTTATGTTATCCACTCTATCGAAACTGGCAACTGATACTCATC
ATTTGGAATGATGTCAAAGAGATCATGATGGCAGGTAAAGTATTATTCAC
TCCATCAAAGGATTAgaacaatcttcaaaaaaatcgaGAGAGGGCTTGAC
TCATTCTTGAGGACTTTTTCTTAATCAAGGGTTGAGATGATCATTTGAGA
GCTTCTAAGGGTTTTGAAGCGTTGGCTAGGTTTTGTTGTCGTGAGGTTTA
AACATCAATTGGGGGTATGTGATTTCCATATATCTTAAAATNTTTTGTTG
TCGTGAGGTTTAAACATCAATGGGAATATGTGATTTCCATATACATATCT
TAAATTCTTCCTTCGTAGGGAAAGTTTGCATAATAAAATGTTTGTTAGAT
ATGCGTGGTATTCTAATGAGAGACGAATCGCGATACATTCTCAATGAACT
TTACGTCAACCATTACATTGTTTGGGTACAAAAGGTGAGTCTACAACGTC
TCTCATCCATCGCAGAAGCATTGAAAGAGAAAGACATTCAGAAAGGAGTG
GTTGGGTNACAAAAGGTGAGTCTACAACGTCTCTCATCCATCGCAGAAGC
ATTGAAAGAGAAAGACATTCAGAAAGAAGTGGTTGGGTTCAATTTGGAAC
AGATCGAATCAGTGTTTCTCAATAACAACCAAGATGATATTTCATCTTCT
TCAACTTCAACCGAGGAAGATTCATCGAGTGAAGACGAAGAGAGTGACCA
AAGCCTCGATTCCGATGATGAACCAACTCCTCCACCTCCTTGATTCGTTC
CTAATGCATTGTGGGAAATCATGGGCAAGGTCTGTCCTTGAATATAACCG
TCAAAAGAAGTTTGGCGAAAGGGATGCCATTCTACTAGTATTACCATTCC
ATCTCTACAAGTACATTCTATAGTGTTTTTACACGTACATACTACTTTTA
CATTAGATTATTTTAGTATCATAGCCCATGTATATTTTCATCGCATCATG
CGTACTTTGCATATACATTTCATGTTTACTTTGGAGTAAATCCATAAGCA
AACATCCTTTTCTGAAGTGTTTTTGTTTCACGATGACGTTTGAGTAGAAG
TAGATTGAGAAGATGTCACATTGcaaaacctttctttttttacttttttt
gtcaGCGTAGGATGGGGTTGTCACTAATTATATTCCTTCTGATTatcatt
tctttttttgctttctcTCGTCATCAGGACATAGAAATCAGATGGATGTA
TTGATTAGTATTGTATTTCCTTTCCATTCATCATTTCTATCTACTAATTG
GCTTTGTATACGATTTTCCCCATGATATTGTATAAAGGGGGAAGCAAAAA
GTGAATATTCATCCTGTCTTTTTCTCTTGTGTAGCTTATACTCTTTTTGT
CTTTATATTATCTTTCTTTTCAGTCAGTCAGCCAGCCTATGAGTTGTAGT
GTCACACGACCCTCTATCCATTGATTCTCATTTTTACCCCCCTTACTACA
CATAATATTTACTTTCTAAGCATAGTTTCTCTATGcgctctttttataag
aagtaTGAAGCTGGTTGGAAATGAAATAAAACGTACCATATAAGAATGAA
ACCAGCTCTGAAATTTAACTTATAACTCCAATACagcaattaaattttta
aaggaTTTCTAGAAAAGGTAGTCAGTGAGATCtatcaaatttataaaaag
tgaaaaactaaaaggtttcttataaagaaggaCTGAACCCTGACATATAA
TCGTCAACAGGATATTATATTACCATGGTAACTCtgttttgattggctta
aagaTGTCATGATTATGATACATAATTGTctcttttattattttcatttc
agtGTGAACAGACAATAGAGCTGACACAAAAAAAATGgaataatcaaaac
aaagaaaaaaatagttgGCTTTGGACGACGTCAGATTCTCAGCATGACAT
TTTTTTCTCCCTTGGTTCGTTGTGTGGTTtcattgaattaaaaaagaaga
gaaaagaaacgTTAGAACGAAAGATTCACATCAAAccttttgagattttt
ggatGGCTCCATTTTGTTTTGTGTAGCAGACGTATTCATTGAGTGATTCT
CGAAAGTTGTAAATACATGGTTTTCTGATTTGACGTTCAATATGAATTCC
GAGGATGTGCAATGGTTACACACTCAAACATACCAATTCGGTGAAAAGAT
TTTGATTATAGATTGTCGCACGTTAAATGAATATTCGAAAGGACACATTG
AGGGTGCCATTAATTTGTTTGTCCCATCTTTAATGTTGAGACGATTAAAG
AAAGGCAACGTACCTTTGAAGAACTTTGTTAATTCTGATATCGCAAAAGA
GAAGTTTGAGAATCGATCAAGTTGTGATAAGATTGTTTTATATGATGAAT
CGTCAACTACCGTCACCGCTGACAGCATTTTGGAAATCTTATCGAAGAAA
TTATTGGATGCGCCACCCTTAGTCCATCTGAAAGGTTTGTAGtcttaaag
aattttttcataCTGCTCTGATTTTGAAACTGAAATTGATTTATTATTTA
CGGAAAGTTATTCTCTTGACTCGATATCCTTTACACCGTGACGTAAACTC
TAGATTTCAGATAAACTTCAAAATGGCATTGTATATTACATTCCATTGAT
CATACAgtataaattttgataatatttttttctaccgATTTCAGGTGGTT
TTCATCATTTCGAGCAAGCATTCCCTCACTTATGTACATGCGGAGAAGGT
AATGAACTTAACAATGCAATGTTCAGTCTTTCCAACCTCTCACTGGATCC
AGCATTATCAGCAGATACCATCCCTTCACCAATGCTAGACGTTGGTCTGT
CTCGCCTCAACAGTGCAAACAATGCTAAAGACTTGTTATTTCGACCTGAT
TCTTCTGGACCCATTGAAATCGTCTCCAACCTTTTCTTGGGCAACAAAGT
GGATGCGTCATCGTTGGATTTGTTGAGGAAAGCACGCATCACTCACATAC
TGAACGTCACGCCAGACCTTCCCAATGATTTCACCGAACAGTACCAGTAC
CTTCGGTTAGCTGTCAAAGATGATTGGACCGGTTATCTTGCTGATCACTT
TGCAGAGGCTTACGATTTTATTGGTAAGTGAAAAATCATATTTGAGGCTT
acctttttttaagaacaaactatataagaacataaggcttcggtggccaa
aatcttaagaacaagttaagaacattttaagaaaagggTACcacaaatac
tcacaaaatggtgaaaatgagaacaGGCTTAGAACACATTTTAGGCTTGA
TAGCCGAAAAGCTAAGAACGTGTAGTTTAGGTTTCACCAACAAAATTCAA
GTGTTTATACCCAAACTACCTTAGTAGGTCAATGGAATGGTAAGGAGATT
GTTAAGGAAAGATAAAAGTGATAGAAacgatcaattttttgaatttctcc
tATTACGGCAAGGTAATATTGTAGGAATATCATGTTATTGTCAAATGTTG
ATGCATATATATATTCTTTAATCAGATAGACACAAACTTAATTGTTTTCA
CACAAAAGTACGAAAtgtataaaaatcaaattagcTCCTTATTATTTAAG
TACTCttcttatcttgacatcaacatggtgatttttttttcttgctaTAA
GAGGATTATTTGATAAAACGCGCAGTGCAATTTGATAAATGAATGTTCAA
gtgttgtttgtttcttattttgtacaatgtcaaatttcctcgaacaaaaa
taaaaagcgaaatgaagaaaaatatttcttttctcaaTGGAGTTTGTCAA
ATTGCCTTTATAATTCTTGAAATCATATTTGATGTCAATTATTGAATGAT
TAATCACCTAGGCAACGGAACAAAAGAACCGGAAATAAAAGGACCTAGCA
TTTTCCGCCAAGTCATTAGTTCACTAATTACCCCTCATTTTATTCCATCC
TCTCTCATTAGAGGAGATAATCAAATGCCAAAAAAAGTCTTTCTTCCTTC
AGATATTGTTTGAAGAAGAATTTTGAAAGCCTTCTTGACCTTTTAAGTTT
TAAAtctgaatatgtttttaaaatgttattaatttcaccattttgcgagt
atttttgtgcaatgtCCTAAGGAATTTGTTTTTCAGTGGTCataaatatc
ttataaatatcttttagccatcgaagcattatcatgttcttttatagttt
gttcttatgaaaacaAAACGCATATTAAAAATGCGTATGGTGTAAAATAT
TATAATGGCTGActctaaaggcttggggacacgagaagtttttttttgtg
ttggtgcaatgcaacatgctctatccgaccaacacaataaaaaaagtgca
tgtcccatggtttctttttttgtttcatgggacaaaaagtgagggaaata
cccaaaagacactcTGATTTTGTCTTTGGGACaatgattcgaatcaattt
tgctccattgttccagggacaaaagtgagatttcacttttattggtagaa
agaaaaatggagtCGAGCCACGAGAAAGTGCCTCAGGTTGGTGGAATGGA
GCATGCTTCATTGCACCAACACGAAACTTCTCGTGTCCACAAGCCTTACA
TGTCCATATTAAGTAATAATAAGTCCTCGTGCTCTCTCTTTTTTACGTGA
GACAGGATTGTTGAATCATAAGCGTTTATTCCCACTATGATGGGTGTGTT
TTATTGCAAAGAGACTGAGCCAGAATGTCGACTGCGATCGAGAAATGATG
ATGTTGATGATGAAGCGTTTTCAATAAAGTATCGTTAGAGGACCTTACAC
GAGTTTCTAGTCTACCTTCGTCTTAGTATGTAGTGAATATTTTCTTCGTT
GAGGCCTTGAAATGTCTACAGTGTGTAGACTAGTGGATTTGTTGTTCAGG
TTCTAATACTGTTTTGCTTGTCTCTATTCACCAGATAAAGCAATCAAGGA
GAATGGTCGTGTATTGGTGCACTGTGTGGGAGGTATCTCACGATCCAGCN
CAATCAAAGAGAATGGTCGTGTATTGGTGCACTGTGTGGGAGGTATCTCG
CGATCCAGTACCATCATCATCGCTTACCTCATGTTGAAATACGACTACTC
ACTCAACAAAGCTTTCGATATGgttaaaatcaagaaaacaaacaTTGCTC
CCAACTTTAATTTCATGGGACAGTTACTCGAATTGGAACGCAAGAGACAG
GACTCAGCCTCCCTCTATCCTCCAGGAAGCATCAGCCCAGGTTCATCATC
AATTAGTAGTGAGATTTCCACCACTAGCTGCTGACTAAAGATAGGGGACC
AATGACTCATGATGCTTTGTTGTATAGATTCTAGTTAACTGTGCTCCGTT
TATTGGGCTTGTTTCGTATACATTCGCATCGTTTTGTTTCATGGAGACTG
AAGCTTCAAAGACATTTGAATCACCTATCATCTAAAATACGACAATGTCA
TTATCTCACTTCGTGTCTGTTTTTAAAGTatttaaagtgatttttaacGA
ATCGTTCAATAATTGAAACAATGTTCTTTTTTACTGGATGCTAAGTGCTT
TTATGTCAGGACTAGGTCAAGTTTCATTTATACTTTAATAGGATTAACTT
Ttgtgagattaaatttcgcgatttcgcgtatttttgccattttcgcgaaa
ttaagtcttGCTAAAACGCGTCAGATtgctgactcgcgaaattaaatcca
actGAAATCTCTTTTTCGGTGGAGGAACCAGTCAAAACTCTCTATttgta
gcaaaaaaaaatggccattttaagcttttttcagactcattcgtgaaatt
aaatctacgcgaaatttttcaaaacgctgatttgtgcagttaaatccaga
aaatttcgcgattttttttcttcgagaAATTAAatctcgcaaaatttaat
ccgattaaagtattgtCGATTATGTTGACTTAAAATCAGTACAAACTTTT
CGAGTGGAAATGTGATGCCACTTTCGAGTTTGCCAGTAACTCGGTCCAGG
CTACCTTCAATCATGTTGTAGAATTCCTTTTGATTTCTCTTGATGAGGTC
TCGTTTTTGTACCGTTAATTGCATTGATTTCAAAGTCCCGGAGGGGAAAT
GAagtcacttatttcccatctaaaacACGTGACCCGCCGCTTTGTTTGTC
GTTTTCACACAAAGTTTCTAAATACGGACAAATCTTTCTAGCCCCTTCGg
agcttcaaactcaatggctAATTCTTCCCCTCATTTTACTCTATATTACT
TTATTACACTGTTTCATTTCATCAGTAGAGAACCCTTGGggtatttttta
tcttcttcatATGATGTTCTAAACAATGATTgcttatttaaatttttata
ccaatttttatTGAACTGTTCTATTTTTCCCTGCAGTTTTCCGTTAAATT
ATTATTCTTATATTTTCAAGCTTGTCTCTTTTTGATAGTTTAACTTAAGT
ATattttttatagttttatataaaaataatggaatttTAACCCTTCTTAT
TGTTGTATATATTCTAGATCATCgatttcattgaaaagtaaACCACTATT
TCGAGTGCAATAAACTGCGTTTGTATTTTGCAGACCCTTTGGCAATAATG
CATTTACAACACTCACCATATT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042200	XLOC_042200	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_471	supercontig	scaffold_471:397700..411171 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.456614	0.518476	0	1.0726	2.3508	0	0.0407979	0.204267	0.054967	0.00657631	0.0492105	0.0269188	0.124169	0.602422	0.0108798	0.00051116	0.0052679	0.155311	0.0264056	0.071182	0.199567	2.05766	1.61522	0.460307	0.195231	2.65207	2.29497e-07	1.941e-05	0.00763398	0.0455609

Blast

[Close]

BLAST of TCONS_00067576 vs. Swiss-Prot (Human)
Match: SHQ1 (Protein SHQ1 homolog OS=Homo sapiens GN=SHQ1 PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 7.052e-85
Identity = 112/289 (38.75%), Postives = 176/289 (60.90%), Query Frame = 2

Query:  491 DWDW-CQQTSSQNVED--LTGKYKYGFANSFQDALSKFQEETEEFIDIPSPDTTSHAERRKLRIHHENNHFNVEHYMADYVEWDNMSSLVNFAPPWLSK-------MKNSEEKNEHFDMLHFTDEEEKMLTLLPNKDYLLSSLDERKCLLSLVDLLFAYCYDHRTTEGENTSESPWTICKLSSTLSWFDSFQTIDEVVVNCCRRALCYPLYRNWQLILIIWNDVKEIMMAGKVCIIKCLLDMRGILMRDESRYILNELYVNHYIVWVQKVSLQRLSSIAEALKEKDIQK 1327
            ++DW  +QT  + V +  L  +  YGF N     L + Q+E  + IDI  PD T  AERR+ R+  E   F+ +HY+AD+ E + +  ++ + P W  K       ++ S+E+  H  ++ F++EE+  L    NK YLL     R+   SL+D+L AYCY+ R TEGE   ES W I KLS TL WF+++  + +++V+  RR LCYPLYR+++L++  + D  +I+  GK  ++KCLLD+  I   ++  YILN+LY++ Y VW+QKV  ++L+++AEALKE  + K
Sbjct:  124 EFDWEIEQTPCEEVSESALNPQCHYGFGNLRSGVLQRLQDELSDVIDIKDPDFTPAAERRQKRLAAELAKFDPDHYLADFFEDEAIEQILKYNPWWTDKYSKMMAFLEKSQEQENHATLVSFSEEEKYQLRKFVNKSYLLDKRACRQVCYSLIDILLAYCYETRVTEGEKNVESAWNIRKLSPTLCWFETWTNVHDIMVSFGRRVLCYPLYRHFKLVMKAYRDTIKILQLGKSAVLKCLLDIHKIFQENDPAYILNDLYISDYCVWIQKVKSKKLAALAEALKEVSLTK 412

HSP 2 Score: 114.39 bits (285), Expect = 7.052e-85
Identity = 55/119 (46.22%), Postives = 75/119 (63.03%), Query Frame = 1

Query:   37 MITPLFKIRQDDDNLLIDIYAKFVKANDVEIYVEGNMFKFYVKPYFLRLNLPGKLCEECEESGKYDVGEGIFQFKLKKATPGEFFQDLDMITTLMATRKELQI-PLIEEISTGIINKRV 390
            M+TP F + QD D L I I   + + ++ ++Y EG+ FKFY KPYFLRL LPG++ E   E G YD  +GIF  +L K TPG+ F+ L+M+T L+A RK     PL+EEI    I + V
Sbjct:    1 MLTPAFDLSQDPDFLTIAIRVPYARVSEFDVYFEGSDFKFYAKPYFLRLTLPGRIVENGSEQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPRKSRTAKPLVEEIGASEIPEEV 119

The following BLAST results are available for this feature:

BLAST of TCONS_00067576 vs. Swiss-Prot (Human)

BLAST of TCONS_00067576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1

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POSITION

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Match Name	E-value	Identity	Description
SHQ1	7.052e-85	38.75	Protein SHQ1 homolog OS=Homo sapiens GN=SHQ1 PE=1 ...	[more]

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TCONS_00067576 (transcript) - C. hemisphaerica

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