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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067571 ID=TCONS_00067571|Name=TCONS_00067571|organism=Clytia hemisphaerica|type=transcript|length=1940bpRun BLAST on NCBI protein sequence of TCONS_00067571-protein >TCONS_00067571-protein ID=TCONS_00067571-protein|Name=TCONS_00067571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp RFGNIFPRTELPVRIFFSEQKHKNGDEGQILLFSSSFCKLCLIVNFTVSVRun BLAST on NCBI transcript from alignment at scaffold_471:373249..383521+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067571 ID=TCONS_00067571|Name=TCONS_00067571|organism=Clytia hemisphaerica|type=transcript|length=10273bp|location=Sequence derived from alignment at scaffold_471:373249..383521+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_471:373249..383521+ >TCONS_00067571 ID=TCONS_00067571|Name=TCONS_00067571|organism=Clytia hemisphaerica|type=CDS|length=16980bp|location=Sequence derived from alignment at scaffold_471:373249..383521+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00067571 vs. Swiss-Prot (Human)
Match: OTUD5 (OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1) HSP 1 Score: 303.908 bits (777), Expect = 1.146e-93 Identity = 148/257 (57.59%), Postives = 186/257 (72.37%), Query Frame = 3
Query: 585 EEKTDGYNSSDEYGEPPPPCATGCGQKDSSSFDIVEMEKNFEHDLREEKGFNIKEMATDGACLFRAVADQIYGDQEMHGVVRRHCMDYMVKNRDFFSQYVTEDFNSYIGRKRNEHSHGNHIEMQALSEMYNRPIEVYQYST-----QPINTFHSRTLYSSNDDTPPIRLSYHGNVHYNSIIDPYNPTVGVGLGLAGYKPGTEEEELINNCVKESETSQLEQAMLEDKLKATDWETADEDIAEMVARESYLQWLKDNQ 1340
EE GYNS DEY A D ++ + + E FE LR++KGF IK+M DGACLFRAVADQ+YGDQ+MH VVR+HCMDY++KN D+FS YVTEDF +YI RKR + HGNHIEMQA++EMYNRP+EVYQYST +PINTFH ++ + D+ PIR+SYH N+HYNS+++P T+GVGLGL +KPG E+ L+ N +K SE S +EQ MLEDK +ATDWE +E I E VARESYLQWL+D +
Sbjct: 169 EEVGAGYNSEDEYEA----AAARIEAMDPATVE--QQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHG--IHQNEDE--PIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWLRDQE 415 The following BLAST results are available for this feature:
BLAST of TCONS_00067571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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