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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067570 ID=TCONS_00067570|Name=TCONS_00067570|organism=Clytia hemisphaerica|type=transcript|length=2849bpRun BLAST on NCBI protein sequence of TCONS_00067570-protein >TCONS_00067570-protein ID=TCONS_00067570-protein|Name=TCONS_00067570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=789bp MYQKQLLILFLQAHFISIVKGFCDHELTADDGTIQSPHYPSQYQPDTSCVRun BLAST on NCBI transcript from alignment at scaffold_471:360388..368765+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067570 ID=TCONS_00067570|Name=TCONS_00067570|organism=Clytia hemisphaerica|type=transcript|length=8378bp|location=Sequence derived from alignment at scaffold_471:360388..368765+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_471:360388..368765+ >TCONS_00067570 ID=TCONS_00067570|Name=TCONS_00067570|organism=Clytia hemisphaerica|type=CDS|length=33180bp|location=Sequence derived from alignment at scaffold_471:360388..368765+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00067570 vs. Swiss-Prot (Human)
Match: TLL2 (Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 5.321e-47 Identity = 137/490 (27.96%), Postives = 211/490 (43.06%), Query Frame = 3
Query: 150 FLQAHFISIVKGFCDHELTADDGTIQSPHYPSQYQPDTSCVWTITVKEGHYVKLSFLDFDVEPYDGCKTDMLEIKDGGSKNSAMIDIFSSKSTIKRDKGGQYCNLRRPPKVVTSTGNQLRLWFSSDSTIQYRGFKATYQAIKDE-------GC---------------------------------GKVDEIPGFLSSPRYPFAYPNNIDCQWDIVAPAGRYISLEFTAFQLESSCSSNEGCKCNDYILVKDHVTGETI---EYCMS-SPARMVSKGNKLTIKFHSDSYGRLNGFKV---SISQSSTKQCGG------------------------------------DIYSEDGVIKSPNFNLMTDATYPPFSYCIWTIHTKKNSYLSLKFQYFDVAGNIPGSCDTDYLLIHDGPNQTFPSLGRYCNRFKPNVIVSSAESIFIQFASGGYSLRKGFKIFFQTHTKSCSSSLGMEDGRIHNMDLQTSSNF 1370
L F + + C ++ D G IQSP+YP Y+P CVW ITV EG +V L+F F++E +D C D LE++DG ++ SA+I G +C +P V +S+ N+L + F SD +I GF A + DE GC G + ++ G ++SP +P YP N +C W +VAPA ISL+F F+LE N+ CK D++ V+ ++ + +C S +P + S+ N + ++F SD+ GF+ S K GG I S +G + SPN+ YP C W I + + L F F++ + C D+L ++DGP+ P LGR+C KP+ V+S S+F++F S RKGF+ H+ C L E + +L + + F
Sbjct: 451 ILGKGFFAAYEATCGGDMNKDAGQIQSPNYPDDYRPSKECVWRITVSEGFHVGLTFQAFEIERHDSCAYDYLEVRDGPTEESALI--------------GHFCGYEKPEDVKSSS-NRLWMKFVSDGSINKAGFAANFFKEVDECSWPDHGGCEHRCVNTLGSYKCACDPGYELAADKKMCEVACGGFITKLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELE----GNDVCK-YDFVEVRSGLSPDAKLHGRFCGSETPEVITSQSNNMRVEFKSDNTVSKRGFRAHFFSDKDECAKDNGGCQHECVNTFGSYLCRCRNGYWLHENGHDCKEAGCAHKISSVEGTLASPNW----PDKYPSRRECTWNISSTAGHRVKLTFNEFEIEQHQ--ECAYDHLEMYDGPDSLAPILGRFCGSKKPDPTVASGSSMFLRFYSDASVQRKGFQA---VHSTECGGRLKAE---VQTKELYSHAQF 908 HSP 2 Score: 148.673 bits (374), Expect = 2.010e-36 Identity = 106/404 (26.24%), Postives = 179/404 (44.31%), Query Frame = 3
Query: 189 CDHELTADDGTIQSPHYPSQYQPDTSCVWTITVKEGHYVKLSFLDFDVEPYDGCKTDMLEIKDGGSKNSAMIDIFSSKSTIKRDKGGQYCNLRRPPKVVTSTGNQLRLWFSSDSTIQYRGFKATYQAIKDE---------------------------------------GCG-KVDEIPGFLSSPRYPFAYPNNIDCQWDIVAPAGRYISLEFTAFQLESSCSSNEGCKCNDYILVK--DHVTGETIEYCMSS-PARMVSKGNKLTIKFHSDSYGRLNGFKVSISQSSTKQCGGDIYSEDGVIKSPNFNLMTDATYPPFSYCIWTIHTKKNSYLSLKFQYFDVAGNIPGSCDTDYLLIHDGPNQTFPSLGRYCNRFKPNVIVSSAESIFIQFASGGYSLRKGF 1271
C +T +GTI SP +P +Y + +CVW + + + L F F++E D CK D +E++ G S ++ + F T P+V+TS N +R+ F SD+T+ RGF+A + + KDE GC K+ + G L+SP +P YP+ +C W+I + AG + L F F++E ++ C + + D + +C S P V+ G+ + ++F+SD+ + GF+ S +CGG + +E + + D YP + C W I + + L F+ F+V C DY+ +DG + + P LGR+C I S+ +S+ I+F + +KGF
Sbjct: 620 CGGFITKLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGNDVCKYDFVEVRSGLSPDAKLHGRFCGSET---------------PEVITSQSNNMRVEFKSDNTVSKRGFRAHFFSDKDECAKDNGGCQHECVNTFGSYLCRCRNGYWLHENGHDCKEAGCAHKISSVEGTLASPNWPDKYPSRRECTWNISSTAGHRVKLTFNEFEIEQ----HQECAYDHLEMYDGPDSLAPILGRFCGSKKPDPTVASGSSMFLRFYSDASVQRKGFQAVHS----TECGGRLKAEVQTKELYSHAQFGDNNYPSEARCDWVIVAEDGYGVELTFRTFEVEEE--ADCGYDYMEAYDGYDSSAPRLGRFCGSGPLEEIYSAGDSLMIRFRTDDTINKKGF 998 HSP 3 Score: 129.028 bits (323), Expect = 3.423e-30 Identity = 106/422 (25.12%), Postives = 175/422 (41.47%), Query Frame = 3
Query: 189 CDHELTADDGTIQSPHYPSQYQPDTSCVWTITVKEGHYVKLSFLDFDVEPYDGCKTDMLEIKDGGSKNSAMIDIFSSKSTIKRDKGGQYCNLRRPPKVVTSTGNQLRLWFSSDSTIQYRGFKATYQAIKDEGCGKVDEIPGFLSSPRYPFAYPNNIDCQWDIVAPAGRYISLEFTAFQLE--SSCSSNEGCKCNDYILVKDHVTGETI---EYC-MSSPARMVSKGNKLTIKFHSDSYGRLNGFKVSISQSSTK---------------------------------------QCGGDIYSEDGVIKSPNFNLMTDATYPPFSYCIWTIHTKKNSYLSLKFQYFDVAGNIPGSCDTDYLLIHDGPNQTFPSLGRYCNRFKPNVIVSSAESIFIQFASGGYSLRKGFKIFFQTHTKSCSSSLG 1319
C L G +P +P+ Y + CVW I+V G + L+F D+ C D +E++DG + + ++ G++C + P +V ST ++L + F S S I +GF A Y+A G +++ G + SP YP Y + +C W I G ++ L F AF++E SC+ DY+ V+D T E+ +C P + S N+L +KF SD GF + + + CGG I +G I SP + YP C+W + +SL+F+ F++ GN C D++ + G + GR+C P VI S + ++ ++F S ++GF+ F + C+ G
Sbjct: 351 CGETLQDTTGNFSAPGFPNGYPSYSHCVWRISVTPGEKIVLNFTSMDLFKSRLCWYDYVEVRDGYWRKAPLL--------------GRFCGDKIPEPLV-STDSRLWVEFRSSSNILGKGFFAAYEATCG---GDMNKDAGQIQSPNYPDDYRPSKECVWRITVSEGFHVGLTFQAFEIERHDSCAY-------DYLEVRDGPTEESALIGHFCGYEKPEDVKSSSNRLWMKFVSDGSINKAGFAANFFKEVDECSWPDHGGCEHRCVNTLGSYKCACDPGYELAADKKMCEVACGGFITKLNGTITSPGW----PKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGN--DVCKYDFVEVRSGLSPDAKLHGRFCGSETPEVITSQSNNMRVEFKSDNTVSKRGFRAHFFSDKDECAKDNG 741 The following BLAST results are available for this feature:
BLAST of TCONS_00067570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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