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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067569 ID=TCONS_00067569|Name=TCONS_00067569|organism=Clytia hemisphaerica|type=transcript|length=2811bpRun BLAST on NCBI transcript from alignment at scaffold_471:360387..368765+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067569 ID=TCONS_00067569|Name=TCONS_00067569|organism=Clytia hemisphaerica|type=transcript|length=8379bp|location=Sequence derived from alignment at scaffold_471:360387..368765+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067569 vs. Swiss-Prot (Human)
Match: TLL2 (Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 1.274e-48 Identity = 137/477 (28.72%), Postives = 211/477 (44.23%), Query Frame = 1
Query: 151 FLQAHFISIVKGFCDHELTADDGTIQSPHYPSQYQPDTSCVWTITVKEGHYVKLSFLDFDVEPYDGCKTDMLEIKDGGSKNSAMIGGQYCNLRRPPKVVTSTGNQLRLWFSSDSTIQYRGFKATYQAIKDE-------GC---------------------------------GKVDEIPGFLSSPRYPFAYPNNIDCQWDIVAPAGRYISLEFTAFQLESSCSSNEGCKCNDYILVKDHVTGETI---EYCMS-SPARMVSKGNKLTIKFHSDSYGRLNGFKV---SISQSSTKQCGG------------------------------------DIYSEDGVIKSPNFNLMTDATYPPFSYCIWTIHTKKNSYLSLKFQYFDVAGNIPGSCDTDYLLIHDGPNQTFPSLGRYCNRFKPNVIVSSAESIFIQFASGGYSLRKGFKIFFQTHTKSCSSSLGMEDGRIHNMDLQTSSNF 1332
L F + + C ++ D G IQSP+YP Y+P CVW ITV EG +V L+F F++E +D C D LE++DG ++ SA+I G +C +P V +S+ N+L + F SD +I GF A + DE GC G + ++ G ++SP +P YP N +C W +VAPA ISL+F F+LE N+ CK D++ V+ ++ + +C S +P + S+ N + ++F SD+ GF+ S K GG I S +G + SPN+ YP C W I + + L F F++ + C D+L ++DGP+ P LGR+C KP+ V+S S+F++F S RKGF+ H+ C L E + +L + + F
Sbjct: 451 ILGKGFFAAYEATCGGDMNKDAGQIQSPNYPDDYRPSKECVWRITVSEGFHVGLTFQAFEIERHDSCAYDYLEVRDGPTEESALI-GHFCGYEKPEDVKSSS-NRLWMKFVSDGSINKAGFAANFFKEVDECSWPDHGGCEHRCVNTLGSYKCACDPGYELAADKKMCEVACGGFITKLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELE----GNDVCK-YDFVEVRSGLSPDAKLHGRFCGSETPEVITSQSNNMRVEFKSDNTVSKRGFRAHFFSDKDECAKDNGGCQHECVNTFGSYLCRCRNGYWLHENGHDCKEAGCAHKISSVEGTLASPNW----PDKYPSRRECTWNISSTAGHRVKLTFNEFEIEQHQ--ECAYDHLEMYDGPDSLAPILGRFCGSKKPDPTVASGSSMFLRFYSDASVQRKGFQA---VHSTECGGRLKAE---VQTKELYSHAQF 908 HSP 2 Score: 154.451 bits (389), Expect = 3.316e-38 Identity = 107/391 (27.37%), Postives = 181/391 (46.29%), Query Frame = 1
Query: 190 CDHELTADDGTIQSPHYPSQYQPDTSCVWTITVKEGHYVKLSFLDFDVEPYDGCKTDMLEIKDGGSKNSAMIGGQYCNLRRPPKVVTSTGNQLRLWFSSDSTIQYRGFKATYQAIKDE---------------------------------------GCG-KVDEIPGFLSSPRYPFAYPNNIDCQWDIVAPAGRYISLEFTAFQLESSCSSNEGCKCNDYILVK--DHVTGETIEYCMSS-PARMVSKGNKLTIKFHSDSYGRLNGFKVSISQSSTKQCGGDIYSEDGVIKSPNFNLMTDATYPPFSYCIWTIHTKKNSYLSLKFQYFDVAGNIPGSCDTDYLLIHDGPNQTFPSLGRYCNRFKPNVIVSSAESIFIQFASGGYSLRKGF 1233
C +T +GTI SP +P +Y + +CVW + + + L F F++E D CK D +E++ G S + A + G++C P+V+TS N +R+ F SD+T+ RGF+A + + KDE GC K+ + G L+SP +P YP+ +C W+I + AG + L F F++E ++ C + + D + +C S P V+ G+ + ++F+SD+ + GF+ S +CGG + +E + + D YP + C W I + + L F+ F+V C DY+ +DG + + P LGR+C I S+ +S+ I+F + +KGF
Sbjct: 620 CGGFITKLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGNDVCKYDFVEVRSGLSPD-AKLHGRFCG-SETPEVITSQSNNMRVEFKSDNTVSKRGFRAHFFSDKDECAKDNGGCQHECVNTFGSYLCRCRNGYWLHENGHDCKEAGCAHKISSVEGTLASPNWPDKYPSRRECTWNISSTAGHRVKLTFNEFEIEQ----HQECAYDHLEMYDGPDSLAPILGRFCGSKKPDPTVASGSSMFLRFYSDASVQRKGFQAVHS----TECGGRLKAEVQTKELYSHAQFGDNNYPSEARCDWVIVAEDGYGVELTFRTFEVEEE--ADCGYDYMEAYDGYDSSAPRLGRFCGSGPLEEIYSAGDSLMIRFRTDDTINKKGF 998 HSP 3 Score: 133.65 bits (335), Expect = 9.514e-32 Identity = 106/409 (25.92%), Postives = 175/409 (42.79%), Query Frame = 1
Query: 190 CDHELTADDGTIQSPHYPSQYQPDTSCVWTITVKEGHYVKLSFLDFDVEPYDGCKTDMLEIKDGGSKNSAMIGGQYCNLRRPPKVVTSTGNQLRLWFSSDSTIQYRGFKATYQAIKDEGCGKVDEIPGFLSSPRYPFAYPNNIDCQWDIVAPAGRYISLEFTAFQLE--SSCSSNEGCKCNDYILVKDHVTGETI---EYC-MSSPARMVSKGNKLTIKFHSDSYGRLNGFKVSISQSSTK---------------------------------------QCGGDIYSEDGVIKSPNFNLMTDATYPPFSYCIWTIHTKKNSYLSLKFQYFDVAGNIPGSCDTDYLLIHDGPNQTFPSLGRYCNRFKPNVIVSSAESIFIQFASGGYSLRKGFKIFFQTHTKSCSSSLG 1281
C L G +P +P+ Y + CVW I+V G + L+F D+ C D +E++DG + + ++ G++C + P +V ST ++L + F S S I +GF A Y+A G +++ G + SP YP Y + +C W I G ++ L F AF++E SC+ DY+ V+D T E+ +C P + S N+L +KF SD GF + + + CGG I +G I SP + YP C+W + +SL+F+ F++ GN C D++ + G + GR+C P VI S + ++ ++F S ++GF+ F + C+ G
Sbjct: 351 CGETLQDTTGNFSAPGFPNGYPSYSHCVWRISVTPGEKIVLNFTSMDLFKSRLCWYDYVEVRDGYWRKAPLL-GRFCGDKIPEPLV-STDSRLWVEFRSSSNILGKGFFAAYEATCG---GDMNKDAGQIQSPNYPDDYRPSKECVWRITVSEGFHVGLTFQAFEIERHDSCAY-------DYLEVRDGPTEESALIGHFCGYEKPEDVKSSSNRLWMKFVSDGSINKAGFAANFFKEVDECSWPDHGGCEHRCVNTLGSYKCACDPGYELAADKKMCEVACGGFITKLNGTITSPGW----PKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGN--DVCKYDFVEVRSGLSPDAKLHGRFCGSETPEVITSQSNNMRVEFKSDNTVSKRGFRAHFFSDKDECAKDNG 741 The following BLAST results are available for this feature:
BLAST of TCONS_00067569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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