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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067565 ID=TCONS_00067565|Name=TCONS_00067565|organism=Clytia hemisphaerica|type=transcript|length=537bp
TCCATCAAGTAAAGCTGCGAAGGACAGCTAGGACAAATTTCATTGATTGA
TTTACAAGTTCCATCGACAACTGCTCCGTTTTCAATCTTGCAGAAAAGGT
TTACTTGTTCTCCACTTGGCATTTCTATATTGTAGAAGTTGGTTTCGCAT
GTTGGGCAATTATTTCTGATATCTTTACAACTTGGTTTTTCAACACCATC
AGCACTGATCTGTGGTAATTGGCATTACATGGCATTGACTTCCAATGGGC
TTGTCTACACTTGGGGATGCAATGATTGCGGACAACTCGGACATTACAAT
AAAATTGATCAGGTGGGTTTTTCTTTAGCCTGTGCCAAGCTCTTCTTTGC
GGAAAAGACGTGGATATGCTCATAAATGGTGAGCAACATGGAGACatctg
aaaaatggaaaaacaaagAAGAGAAAGTGGTGTTACAAAGGTGATTTTGT
AACAAATCAATTTTGAgatctcaaaatttttgaaaaagtgacgttaGAAG
TGGTTTCGGAAGAAAATACGTGTTCAAAGGCCTGCTA Run BLAST on NCBI transcript from alignment at scaffold_471:316860..322979+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067565 ID=TCONS_00067565|Name=TCONS_00067565|organism=Clytia hemisphaerica|type=transcript|length=6120bp|location=Sequence derived from alignment at scaffold_471:316860..322979+ (Clytia hemisphaerica)
TCCATCAAGTAAAGCTGCGAAGGACAGCTAGGACAAATTTCATTGATTGA
TTTACAAGTTCCATCGACAACTGCTCCGTTTTCAATCTTGCAGAAAAGGT
TTACTTGTTCTCCACTTGGCATTTCTATATTGTAGAAGTTGGTTTCGCAT
GTTGGGCAATTATTTCTGATATCTTTACAACTTGGTTTTTCAACACCATC
AGCAGTAAATTcacaaaacacttttttcataATGCAGTCTCTCTCTAGGG
AATAAAAATCGGACGTGCAGGTTGGGCAATTTTCCTTCACTTCTTTACAA
CTCGATAATGGAGTGTCctagaaataaaataaactcATGATTACTTTACT
GGATATATTTTGCAGCGGActatgaaaaacaaaaatagttTTGAGTCTTT
TATAATGCCGTGTTAGGCAGTAACATAGGTGTTGTTTGGTAACCAGATCG
TTACAAGATAAGTGTacaggcttggggacacgagaagtttttttcgagTT
GGTGCagtgcaacatgctccatcccaccaacctgaaacgctttctcgtgc
cTCCACCCCgtcttttaataacatttgtgcttctTTCACTCTTGTCCCAg
agacaaaatcagcgtgtcttttgggtatttccctcactttttgtcccatg
aaacaaaaaaagaaaccacgAGACACGCGTTGGGacggagcatgttgcat
tgcaccaacgcgaaaaaaacttcttgtgtTTTCAATAAGTAATGTTTTTT
Tcaccatacacgttttttttaaaagatcatccaaaatttttgaagcctat
ggatgttcttaactttttgaattttaagccttaaaatgttcttcacttgt
tcttaacattttgaccctCGAAggctcatgttcttatatagtttgttctc
ataaaaaacgtgtaccctatttacacccctgtctcagtgccccggtggcc
tgatttcagtacatgatttttttcagtacatggtttcagtacatgatttt
ttcctacgtcactgcagtaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNattactgcagtgacgtaggaaaaaatc
atgtactgaaaccatgtactgaaaaaaatcatgtactgaaatcaggccac
cggggcactgagacaggggtgtctattTAAACTCAAGTTAACGAGTTTCG
TATTATCGGtgtttttcatttgactttttttttgtgattgtgCATGAATA
CGATTGATTGCATGATATTTCTCAAACTTGACTTGCATCTTAATTCACAC
TTACTAAGATATATTACAGAAAATTGTATGTTAGACATATTAAGTAAGGC
TAACCACGGACTCGTAGAACCGAAGCACGTTGATGAAGAAACAAGATGGC
TGATGAAAAGTACTTCACtatgaatttttgtgaattcAGCTATAATGTTT
CGAAACGTATGGAAATGAATCAGCttgccttttttttttttttttttgtt
gttttttttttttgcaaatttactGTAGTTTCAGGGAATGATATTTCCTT
ACATATGCTTGCGAAAAGGCTGAATTGCTTTTGACCCGTTCTTACATCCC
TAAATTGACAAATTGGTACTCAAATTATAAAGAAAAGGGAAAAAAAGGCT
TTGATTCACTTTGTTGAAATGACCTTGGTCAAAGATTATTTAATAAatcc
tttcttttaaaaactaaaaaaacaccccgtggcgtttattcgaagtaaat
cATTACAATATATTCACGAGGGGCGTTTATCTAAAAGACCCTGCATTtat
taaaaatagacaaaaagaacgacaaatttcataaaagacGACAATTTTCG
CCGTCCACGACcctgaccgaaagtgactgtaccacccacgtattcattcc
tctttAATTATCAcaggaattaactacatatggttttaaagaacgacaaa
ttacgcatgcgtgttacaatggaGGATTCTTTAGACGAACAGACTGCTCG
TAACAGCCAATCGTGGAAGCAAAATGTTTGTCTTTCATCCGCCATTAAAC
ACGATGCattaaataattaaattttttgtccaCGTGAATAATTGGGGGAA
AATAATCACACGGCTGTAATTATATTTGTTAGGTGCAATTATGTAAACCA
GCCaattactttaagggcagaaactttcgtgggcagaaactttcgcgttt
ttcgcgattttgatcctttttcgcgaaagtttctgccaggtaaaaaatta
aacctgaaaaacgcaaaggttttttttgcgaaaaataaactttcctcTTC
ACttttgcactgtttgctaaatttttgcgtgttttatgagtttttgttac
caaaaaaggtaaattttatatgaattcgcgaaagttctatctgtgaaatt
tcggctaaaacCATAATTCGTGAAACTTAAATTCGCtgaatttcgcgact
ttttgacttcgcgaaactttctgcccgcgaaactttctgcccttaaagta
agtAGGAGCTGCAAATAGAAtatagaaaaaatataaaaattaattttgga
gagcttcttaaaaaaattaggaaaattttctcttttggtACCTTTTACGC
TTTAAAGTTGCCGCGAGACGGGGTTAAGTGATTTGAAAAGTGATTAAGCT
GACACGAAGTAGGTACACGCTTCAAAGATTTCCGGGGGGGGCGGGTACCT
AGGCGAAATGAGGGTAAGatatgtgccacccttaagggtcTCTTTTTTGG
ATCCTCAaaatcccactaagggtcgtTAAAATCACATAATTCAATTCCAG
TCCccctaagggttgtaaaaacagCTCAAATTCCATATCGTGACCCTCTT
CTATGAaatagtcccaataagggtcacaaaataaggttttttctccattt
tggtCCCTATAAGGGCCCAACCGCCAAAAGttgggcggcacatacccgtc
atcccGCAAACCTAGCAAATCTGGGGGGTGGGGCAAAGattgtggatgtt
cttataaaaaacgtgtttttcGTGACTAATTGTTGATTGCACTTCAAATT
GTAAGATAACTACAttctttaatgggataaattttcgtggATTTCTGTAT
CAAGTCCCAATTATAATATCCGCCAAACACGCGAAGATGTCAGATAACTA
CTTTTAAAATGTTAACTAGCATCTAAGTAGCGCTAATAATGCGTCAACAA
CCAACCAGTACGTATAACTTGGCAGAAAATCAGCTCAAAGCGAAATTTAA
TcgccgcgaaaatttatcctatTAAAGTAGTGCANAATTGTAAGATAACT
ACTTtctttaatgggattaattttcgtggAATTCGGGTCAAGTCCCAATT
ATACAATCCGCCAAACTCGCAAAGATGTCAGATAACTACTTTTAAAATGT
TAACTAGCATCTAAGTAGCGCTAATAATGCGTACTTCAACAACCAACCAG
TACGTGTAACTTGGCAGAAAAAGACGTAAAACTAGAAAATATTGTCTCCC
GATGCCATCCGCGAAATcaagtccccgcgaaatcttaaaattttgcggat
CAGCTCGaagcgaaatttaatccccgcgaaaatttatcctatTAAAGTAT
TACGCACTTGAATTACCTCTATTTGATGATAAAGAAATCCGGTGTTATTT
TCACTtgcatatattttttgttcttcgtttttcaaacaaaaacattgact
tttcttttctacataaaaaccttttttcaattgtcttttacatttcaaaa
tacaCTCGGTAGGTGAGTGCGCGAGAACATGTTTTGAAGCATCCTCTGTA
TCGACACGTTTTGAAGCATCCTCTGCATCTACACGTGCTGTTTTCGGTTG
TTTTGCTTCGCCCAAATACCATTTTGAATAAACCAAACAGAAATTCGACA
AGATTATTAGCAACTTCATATTTGGTAGTTCGGGTAGTTCTTTGTGTAAT
TAATGGCCGAGTTGTCAACGCTTGAAACCAGGGGTTCCAAGTTCGTTCGA
ATTCGAATGTTCTGTTCAAAGTTCAGAGGTAGCCGAGCCGGCTTGCCGTG
GACCACGTGAAGACTATCGAAAGACTATCTAAAAACTCTAGAATACTGGG
CTATCCACAttaaatatcgactctatcccGCCCAAATATTCTTTACATCT
GTTCATCATACACATAACACTGAAAATTAAAGAGATAAAGTATTTATTat
tattctttttctttctttcttcttgAATGCCGAAAACATGTCAACATTTT
TGACGtgaaaaaaaacgtaaaaatttacaaatcaaTGTTTTGTCAcgaaa
tgggccattccattttatatccctACAGGGGGGTGGACAAACATTTCCAA
AGGGTAATCCGATAACAATTTCCAGgaggtgttttttcatttttccaagg
gggtaaaaagttattctaaaatatcCATGGGATAAagaactgattttagt
tcgtccaccctcactttaaggtatgaagactattattcctctctgatggG
AAATtagcccgctcctttagagttttagcgtgggcggccgctaATTCGTC
ATCGAAATATCAGATTACTTCATTTCCCTTTTTAATACATTAGCAGTCTC
ATTAGCAAAATGAGAAATGAATCTCTTAAGATTTTCTTCGTGTTGGCTCT
TAGTCTGCACGAAATGGTATAACAACCTCCAGCAAACGTCTCTaaaacgt
tcaaataacgttagatgaacgttataaCAACGTTGTGTTATAGCGCCCAA
ACGTTGCTGGAAAAAATACCTCGTAGGGGTTAACAATAAATATACTCGTT
TTGCGTTGTTTACTCTCCTCTTCTCCCTTTCCCCTCCAAAATGTACCTTT
TTCTCTGAGAGATGCATTATTTTTGTCAAAGTAAAATTTGTCTGTCATGC
ATGTAAGTTAACCACTGATTCTAGACCTTTTAataatttcagttttttga
agCTAAAAGAATCATTTCAGCAAGCGTATAGGTTAGGTTATAGGATgaag
aaagttgaaaaatgatttATTACAAACTGTTactaaattttaataaaaaa
aaactcaaaaaataggCAAAAAGGTACAGGATGTGCAGCTGGCCAGGGTA
CCTTTTTGCACTTTCACCAGTCTAACGTAGGGtcgaaaaaacacaaaaac
agaaaaatctgTACCtctcagggtaccttttttgaaattttgggaaaaca
gcagaaaatttatagaaaatttagaaagtttAGTCCCATACAGGGTggct
tttttcgcaaattttggcaaaagttttcaaaacatgAGTTCTAcgtagaa
tttatttttcagcgGAACTTCCCCGTCGGTTGGAAAGGGTAATACCTCAC
CCACCCCCCGTACCccttttggtaaaaaaatctctataaaatttcaattg
aatttttgatatttattttGCTCTTTTTATTTTCCAGCTGATCTGTGGTA
ATTGGCATTACATGGCATTGACTTCCAATGGGCTTGTCTACACTTGGGGA
TGCAATGATTGCGGACAACTCGGACATTACAATAAAATTGATCAGGTGGG
TTTTTCTTTAGCCTGTGCCAAGCTCTTCTTTGCGGAAAAGACGTGGATAT
GCTCATAAATGGTGAGCAACATGGAGACatctgaaaaatggaaaaacaaa
gAAGAGAAAGTGGTGTTACAAAGGTGATTTTGTAACAAATCAATTTTGAg
atctcaaaatttttgaaaaagtgacgttaGAAGTGGTTTCGGAAGAAAAT
ACGTGTTCAAAGGCCTGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067565-exon-scaffold_471-1491911889:316860..317063 | TCONS_00067565-exon-scaffold_471-1491911889:316860..317063 | Clytia hemisphaerica | exon |
| TCONS_00067565-exon-scaffold_471-1510915933:316860..317063 | TCONS_00067565-exon-scaffold_471-1510915933:316860..317063 | Clytia hemisphaerica | exon |
| TCONS_00067565-exon-scaffold_471-1575043694:316860..317063 | TCONS_00067565-exon-scaffold_471-1575043694:316860..317063 | Clytia hemisphaerica | exon |
| TCONS_00067565-exon-scaffold_471-1491911889:322647..322979 | TCONS_00067565-exon-scaffold_471-1491911889:322647..322979 | Clytia hemisphaerica | exon |
| TCONS_00067565-exon-scaffold_471-1510915933:322647..322979 | TCONS_00067565-exon-scaffold_471-1510915933:322647..322979 | Clytia hemisphaerica | exon |
| TCONS_00067565-exon-scaffold_471-1575043694:322647..322979 | TCONS_00067565-exon-scaffold_471-1575043694:322647..322979 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_471 | supercontig | scaffold_471:316860..322979 + |
Blast
The following BLAST results are available for this feature:
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