TCONS_00067536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067536
Unique NameTCONS_00067536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067536 ID=TCONS_00067536|Name=TCONS_00067536|organism=Clytia hemisphaerica|type=transcript|length=493bp
aaaaaaatgtaaacaaactatgtAACTGAGCTACCATCTTGCGTGTATTT
ACCTAAGTTTAACCGCCCTCGATACTTAGAGTTTATGGCGGCCATTATTT
GGAACATTTTGATTGCGTGCAGTTCGCGCGGCAATGGAATATTCTTACAG
GTAAgctcaaataaaaaagaataacaaaactcaaaactctctcaacaaaa
atattcttacaaaggAAAAGTGTATTATGTTCCCGAGCATATTACACACT
GGAttctcaaaaaaaggtttttgctCTCTCTCTTCAATGTTTAGTttaaa
catcatgaataatttaGTAGTACCTTCCATTATTctagaaaaagcgcggg
aaattttcattctattttttctGTCTGTTTTTCTCTGTCTTTTATTAAAA
CTTGAGTTATTGATTgagttattctttttttttttactatctcgtatttt
cttataataaaacatTAGTAACTTCAGATGGTTAAAAGCGATG
Run BLAST on NCBI

protein sequence of TCONS_00067536-protein

>TCONS_00067536-protein ID=TCONS_00067536-protein|Name=TCONS_00067536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
IAFNHLKLLMFYYKKIRDSKKKKNNSINNSSFNKRQRKTDRKNRMKISRA
FSRIMEGTTKLFMMFKLNIEEREQKPFFENPVCNMLGNIIHFSFVRIFLL
REF
Run BLAST on NCBI

transcript from alignment at scaffold_47:457752..458244

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067536 ID=TCONS_00067536|Name=TCONS_00067536|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at scaffold_47:457752..458244 (Clytia hemisphaerica)
CATCGCTTTTAACCATCTGAAGTTACTAatgttttattataagaaaatac
gagatagtaaaaaaaaaaagaataactcAATCAATAACTCAAGTTTTAAT
AAAAGACAGAGAAAAACAGACagaaaaaatagaatgaaaatttcccgcgc
tttttctagAATAATGGAAGGTACTACtaaattattcatgatgtttaaAC
TAAACATTGAAGAGAGAGagcaaaaacctttttttgagaaTCCAGTGTGT
AATATGCTCGGGAACATAATACACTTTTcctttgtaagaatatttttgtt
gagagagttttgagttttgttattcttttttatttgagcTTACCTGTAAG
AATATTCCATTGCCGCGCGAACTGCACGCAATCAAAATGTTCCAAATAAT
GGCCGCCATAAACTCTAAGTATCGAGGGCGGTTAAACTTAGGTAAATACA
CGCAAGATGGTAGCTCAGTTacatagtttgtttacattttttt

Coding sequence (CDS) from alignment at scaffold_47:457752..458244

>TCONS_00067536 ID=TCONS_00067536|Name=TCONS_00067536|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_47:457752..458244 (Clytia hemisphaerica)
ATCGCTTTTAACCATCTGAAGTTACTAatgttttattataagaaaatacg
agatagtaaaaaaaaaaagaataactcAATCAATAACTCAAGTTTTAATA
AAAGACAGAGAAAAACAGACagaaaaaatagaatgaaaatttcccgcgct
ttttctagAATAATGGAAGGTACTACtaaattattcatgatgtttaaACT
AAACATTGAAGAGAGAGagcaaaaacctttttttgagaaTCCAGTGTGTA
ATATGCTCGGGAACATAATACACTTTTcctttgtaagaatatttttgttg
agagagttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042178XLOC_042178Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067536-proteinTCONS_00067536-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067536-exon-scaffold_47-1491911889:457752..458244TCONS_00067536-exon-scaffold_47-1491911889:457752..458244Clytia hemisphaericaexon
TCONS_00067536-exon-scaffold_47-1510915933:457752..458244TCONS_00067536-exon-scaffold_47-1510915933:457752..458244Clytia hemisphaericaexon
TCONS_00067536-exon-scaffold_47-1575043694:457752..458244TCONS_00067536-exon-scaffold_47-1575043694:457752..458244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:457752..458244 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124922	0	0.361997	0.56029	0.842319	0.565582	1.00885	1.71838	0.472491	0.726927	4.58291	0.882512	1.91329	2.81735	3.05678	2.15939	3.95967	2.25509	5.45247	6.33184	3.04825	4.87582	2.63024	5.42457	0.159974	0	3.62679	4.7047	1.78022	1.04638
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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