TCONS_00067534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067534
Unique NameTCONS_00067534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2180

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067534 ID=TCONS_00067534|Name=TCONS_00067534|organism=Clytia hemisphaerica|type=transcript|length=2180bp
agagtcacgtgactaaaatatgcaatttcaccggtttgagagatgtgaaa
tagcgtttgccgcctacgttttttgatctcgcgctccgaaaacaattaaa
atgctagatcctatccatcggcacgaaatttaaatagtcaaatttttgct
tcacttttttttgctggagaaagcttaaagttgcctatctagcccttcgg
gcttagatatctgtggttagGAAGAACTCGCAGGATTTCGGGCGCTAGTT
ATTGCGGAAAACCTACAGTATTAgagcaaaaataaaattaccGGACACCA
AAGAATCTTTTGCCTCGATGACCCAACTTTGCGAGATAAAAATGAATGGT
CAAGTTTTTTTCCtcgaaaaattgtgaaattgtcaAGCGCGCTTTCATCA
CCCTCACTTTTGTGAAAGACTCTCTTCTGACAGTCATACAAAACTGGGTG
CAGGTGATGTTCAAGAAAACTTTTCTCTTTGCAACTTAGTAGAAACAGTA
TTGTGTTTCACTCTGAAAAAATGCTGTCATCAACTTCAACGAAGCCTTGT
CCACAGCAAGCTACCAAACAAACCCTGATAACCACCCCACCAGCAGCCAT
CAAGAAACCAAGTAGGAAAAGCTTTCTGGTGAATTTTGTTGCGGGTGGAG
TTGCTGGTACAACTGGAGTTATTGTGACCAGCCCACTCGATGTGGTACAA
ACCAGATTGCAGTCATCGTTTGTCAAACTCACCCCAGCTTCAGCATCTAA
TCTGGCAACAGCAAATGGAGTTGTCACAGCAGCAAACAATTCCAACAGAT
TTGGCTTTCTTGTCTATTCATATATGAAGCACATTGCTAAAACAGAGGGT
TTCTTTGGACTTTATAAAGGACTTGTGCCAAACCTAATGGGAATTGCACC
CAGTAGGGCAATCTATTTTGCtgtttattcaaagtcaaaagcttttttca
ctTCAACACAATTATCAAACAGTTCATGGACTCATATGCTATCAGCACTA
TCTGCAAGCTGGTCTGTATCTACACTTACAAATCCAATATGGTTTGTTAA
AACTAGAATGCAATTAGATTTAAGTGCAACAGGTCAACAAAGAAGGATAA
CTGACGTAGTCAAAGAAGTGTTTAAAAATGAAGGAATCGGTGGATTTTAT
AGAGGACTTTGTGCGTCTTACGTTGGTGCTTCAGAAACAATGATTTATTT
TGTACTTTAcgaaagaatgaaaattttgatgggCTCAACAAGTGAAAATG
AAAAGCTTTCCCCAGTGGGATATATATGttctgcatttctttcaaaatgt
tgtGCTACAGTTGCAGTTTATCCACACGAAGTTGCTCGGACGAGGCTTCG
TCAAGAATCAGTTAGAAGTGCAAAAGACAAACTCTATAAAGGATTTTTGC
AGACACTTCAAAAAGTTTACAGAGACGAAGGATGGACAGGACTTTATGGT
GGTATGGGTGCTCATCTCATGAGACAGGTTCCTAATACTGTTATCATGTT
TTTGACTTATGAAAGTATTGTTAACTTTCTGTCTCATGAATAACAGATTT
GTTGactaattttagaaatatttaaaCAGAGTATTGTATAAGtaattttt
atcaatatttatGCAACTTTAACACTTCAAAAACTTAAAGTCGTTAAAAA
GTATTGCTTATCTTGTaagtttttttgttgtgtttttttatataagcttT
CCTTAATCTTGTCTTAATTTGTTTCTCTATTACGTACTGCCTGGGGGGTA
CTAgagttgcgagctgacgggggtgTCGCCTGACTTTCTTCCCTTAAAAC
CCTTAccggactaaaaaggagaaaacaaaggaaagttttgtgaattttac
taCCCTTAtagggacaaatttgaccaattttgaccaaatttcggtCTCCC
CGGgataaaaagtagaaattttccCTTAGAgggactgaaattccatttgc
tgatttttctgacccttagcaGGACCTTGGagatccaaaaaaggtaccct
taagtgcggcacataccgtaccctccatttgcttAAGTACCCCCCCTCCC
GGGTACTGTCCTATATTTTGTATGAGATTTTTTGGACTTAAATGGTTTTA
TGATGGATGTCTCTAAACCACCTTTTTGGccttaataattttttttgaat
tacacgtttgttttttttaagaaacacgag
Run BLAST on NCBI

protein sequence of Solute mitochondrial carrier

>TCONS_00067534-protein ID=TCONS_00067534-protein|Name=Solute mitochondrial carrier|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MLSSTSTKPCPQQATKQTLITTPPAAIKKPSRKSFLVNFVAGGVAGTTGV
IVTSPLDVVQTRLQSSFVKLTPASASNLATANGVVTAANNSNRFGFLVYS
YMKHIAKTEGFFGLYKGLVPNLMGIAPSRAIYFAVYSKSKAFFTSTQLSN
SSWTHMLSALSASWSVSTLTNPIWFVKTRMQLDLSATGQQRRITDVVKEV
FKNEGIGGFYRGLCASYVGASETMIYFVLYERMKILMGSTSENEKLSPVG
YICSAFLSKCCATVAVYPHEVARTRLRQESVRSAKDKLYKGFLQTLQKVY
RDEGWTGLYGGMGAHLMRQVPNTVIMFLTYESIVNFLSHE
Run BLAST on NCBI

transcript from alignment at scaffold_47:399237..401416

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067534 ID=TCONS_00067534|Name=TCONS_00067534|organism=Clytia hemisphaerica|type=transcript|length=2180bp|location=Sequence derived from alignment at scaffold_47:399237..401416 (Clytia hemisphaerica)
ctcgtgtttcttaaaaaaaacaaacgtgtaattcaaaaaaaattattaag
gCCAAAAAGGTGGTTTAGAGACATCCATCATAAAACCATTTAAGTCCAAA
AAATCTCATACAAAATATAGGACAGTACCCGGGAGGGGGGGTACTTaagc
aaatggagggtacggtatgtgccgcacttaagggtaccttttttggatct
CCAAGGTCCtgctaagggtcagaaaaatcagcaaatggaatttcagtccc
TCTAAGggaaaatttctactttttatcCCGGGGAGaccgaaatttggtca
aaattggtcaaatttgtccctaTAAGGGtagtaaaattcacaaaactttc
ctttgttttctcctttttagtccggTAAGGGTTTTAAGGGAAGAAAGTCA
GGCGAcacccccgtcagctcgcaactcTAGTACCCCCCAGGCAGTACGTA
ATAGAGAAACAAATTAAGACAAGATTAAGGAaagcttatataaaaaaaca
caacaaaaaaacttACAAGATAAGCAATACTTTTTAACGACTTTAAGTTT
TTGAAGTGTTAAAGTTGCataaatattgataaaaattaCTTATACAATAC
TCTGtttaaatatttctaaaattagtCAACAAATCTGTTATTCATGAGAC
AGAAAGTTAACAATACTTTCATAAGTCAAAAACATGATAACAGTATTAGG
AACCTGTCTCATGAGATGAGCACCCATACCACCATAAAGTCCTGTCCATC
CTTCGTCTCTGTAAACTTTTTGAAGTGTCTGCAAAAATCCTTTATAGAGT
TTGTCTTTTGCACTTCTAACTGATTCTTGACGAAGCCTCGTCCGAGCAAC
TTCGTGTGGATAAACTGCAACTGTAGCacaacattttgaaagaaatgcag
aaCATATATATCCCACTGGGGAAAGCTTTTCATTTTCACTTGTTGAGccc
atcaaaattttcattctttcgTAAAGTACAAAATAAATCATTGTTTCTGA
AGCACCAACGTAAGACGCACAAAGTCCTCTATAAAATCCACCGATTCCTT
CATTTTTAAACACTTCTTTGACTACGTCAGTTATCCTTCTTTGTTGACCT
GTTGCACTTAAATCTAATTGCATTCTAGTTTTAACAAACCATATTGGATT
TGTAAGTGTAGATACAGACCAGCTTGCAGATAGTGCTGATAGCATATGAG
TCCATGAACTGTTTGATAATTGTGTTGAagtgaaaaaagcttttgacttt
gaataaacaGCAAAATAGATTGCCCTACTGGGTGCAATTCCCATTAGGTT
TGGCACAAGTCCTTTATAAAGTCCAAAGAAACCCTCTGTTTTAGCAATGT
GCTTCATATATGAATAGACAAGAAAGCCAAATCTGTTGGAATTGTTTGCT
GCTGTGACAACTCCATTTGCTGTTGCCAGATTAGATGCTGAAGCTGGGGT
GAGTTTGACAAACGATGACTGCAATCTGGTTTGTACCACATCGAGTGGGC
TGGTCACAATAACTCCAGTTGTACCAGCAACTCCACCCGCAACAAAATTC
ACCAGAAAGCTTTTCCTACTTGGTTTCTTGATGGCTGCTGGTGGGGTGGT
TATCAGGGTTTGTTTGGTAGCTTGCTGTGGACAAGGCTTCGTTGAAGTTG
ATGACAGCATTTTTTCAGAGTGAAACACAATACTGTTTCTACTAAGTTGC
AAAGAGAAAAGTTTTCTTGAACATCACCTGCACCCAGTTTTGTATGACTG
TCAGAAGAGAGTCTTTCACAAAAGTGAGGGTGATGAAAGCGCGCTtgaca
atttcacaatttttcgaGGAAAAAAACTTGACCATTCATTTTTATCTCGC
AAAGTTGGGTCATCGAGGCAAAAGATTCTTTGGTGTCCggtaattttatt
tttgctcTAATACTGTAGGTTTTCCGCAATAACTAGCGCCCGAAATCCTG
CGAGTTCTTCctaaccacagatatctaagcccgaagggctagataggcaa
ctttaagctttctccagcaaaaaaaagtgaagcaaaaatttgactattta
aatttcgtgccgatggataggatctagcattttaattgttttcggagcgc
gagatcaaaaaacgtaggcggcaaacgctatttcacatctctcaaaccgg
tgaaattgcatattttagtcacgtgactct

Coding sequence (CDS) from alignment at scaffold_47:399237..401416

>TCONS_00067534 ID=TCONS_00067534|Name=TCONS_00067534|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at scaffold_47:399237..401416 (Clytia hemisphaerica)
TTATTCATGAGACAGAAAGTTAACAATACTTTCATAAGTCAAAAACATGA
TAACAGTATTAGGAACCTGTCTCATGAGATGAGCACCCATACCACCATAA
AGTCCTGTCCATCCTTCGTCTCTGTAAACTTTTTGAAGTGTCTGCAAAAA
TCCTTTATAGAGTTTGTCTTTTGCACTTCTAACTGATTCTTGACGAAGCC
TCGTCCGAGCAACTTCGTGTGGATAAACTGCAACTGTAGCacaacatttt
gaaagaaatgcagaaCATATATATCCCACTGGGGAAAGCTTTTCATTTTC
ACTTGTTGAGcccatcaaaattttcattctttcgTAAAGTACAAAATAAA
TCATTGTTTCTGAAGCACCAACGTAAGACGCACAAAGTCCTCTATAAAAT
CCACCGATTCCTTCATTTTTAAACACTTCTTTGACTACGTCAGTTATCCT
TCTTTGTTGACCTGTTGCACTTAAATCTAATTGCATTCTAGTTTTAACAA
ACCATATTGGATTTGTAAGTGTAGATACAGACCAGCTTGCAGATAGTGCT
GATAGCATATGAGTCCATGAACTGTTTGATAATTGTGTTGAagtgaaaaa
agcttttgactttgaataaacaGCAAAATAGATTGCCCTACTGGGTGCAA
TTCCCATTAGGTTTGGCACAAGTCCTTTATAAAGTCCAAAGAAACCCTCT
GTTTTAGCAATGTGCTTCATATATGAATAGACAAGAAAGCCAAATCTGTT
GGAATTGTTTGCTGCTGTGACAACTCCATTTGCTGTTGCCAGATTAGATG
CTGAAGCTGGGGTGAGTTTGACAAACGATGACTGCAATCTGGTTTGTACC
ACATCGAGTGGGCTGGTCACAATAACTCCAGTTGTACCAGCAACTCCACC
CGCAACAAAATTCACCAGAAAGCTTTTCCTACTTGGTTTCTTGATGGCTG
CTGGTGGGGTGGTTATCAGGGTTTGTTTGGTAGCTTGCTGTGGACAAGGC
TTCGTTGAAGTTGATGACAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042176XLOC_042176Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Solute mitochondrial carrierTCONS_00067534-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067534-exon-scaffold_47-1491911889:399237..401416TCONS_00067534-exon-scaffold_47-1491911889:399237..401416Clytia hemisphaericaexon
TCONS_00067534-exon-scaffold_47-1510915933:399237..401416TCONS_00067534-exon-scaffold_47-1510915933:399237..401416Clytia hemisphaericaexon
TCONS_00067534-exon-scaffold_47-1575043694:399237..401416TCONS_00067534-exon-scaffold_47-1575043694:399237..401416Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:399237..401416 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
43.711	47.6401	17.5543	14.5696	17.4293	12.9503	13.4506	14.2049	14.919	21.1221	15.012	18.4586	16.2997	22.9279	16.6879	14.6968	23.9513	21.5893	19.7847	17.2489	33.757	30.7622	105.688	82.4204	18.2809	23.4467	26.2315	28.1505	52.0599	64.59
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002067Mit_carrier
IPR018108Mitochondrial_sb/sol_carrier
IPR023395Mt_carrier_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
Blast
[Close]
BLAST of TCONS_00067534 vs. Swiss-Prot (Human)
Match: S2536 (Solute carrier family 25 member 36 OS=Homo sapiens GN=SLC25A36 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.410e-64
Identity = 127/296 (42.91%), Postives = 174/296 (58.78%), Query Frame = 2 
Query:  683 PLDVVQTRLQSSFVKLTPASASXXXXXXXXXXXXXXSNRFGFLVYSYMKHIAKTEGFFGLYKGLVPNLMGIAPSRAIYFAVYSKSKAFFTSTQLSNSSWTHMLSALSASWSVSTLTNPIWFVKTRMQLDLSATGQQRRIT-DVVKEVFKNEGIGGFYRGLCASYVGASETMIYFVLYERMKILM-----GSTSENEKLSP------VGYICSAFLSKCCATVAVYPHEVARTRLRQESVRSAKDKLYKGFLQTLQKVYRDEGWTGLYGGMGAHLMRQVPNTVIMFLTYESIVNFLS 1534
            PL+VV+TRLQSS V L  +       A   V    +      L     K I + EG   L++GL PNL+G+APSRAIYFA YS  K         +S+  HM+SA  A ++  T TNPIW +KTR+QLD    G++R    + V++V++ +G+ GFYRG+ ASY G SET+I+FV+YE +K  +      ST EN++ S       VG + +A  SK CAT   YPHEV RTRLR+E  +      Y+ F QTL  + ++EG+  LY G+  HL+RQ+PNT IM  TYE +V  L+
Sbjct:   26 PLEVVKTRLQSSSVTLYISEVQLNTMAGASVNRVVSPGPLHCL-----KVILEKEGPRSLFRGLGPNLVGVAPSRAIYFAAYSNCKEKLNDVFDPDSTQVHMISAAMAGFTAITATNPIWLIKTRLQLDARNRGERRMGAFECVRKVYQTDGLKGFYRGMSASYAGISETVIHFVIYESIKQKLLEYKTASTMENDEESVKEASDFVGMMLAAATSKTCATTIAYPHEVVRTRLREEGTK------YRSFFQTLSLLVQEEGYGSLYRGLTTHLVRQIPNTAIMMATYELVVYLLN 310
The following BLAST results are available for this feature:
BLAST of TCONS_00067534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S25362.410e-6442.91Solute carrier family 25 member 36 OS=Homo sapiens... [more]
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