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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067533 ID=TCONS_00067533|Name=TCONS_00067533|organism=Clytia hemisphaerica|type=transcript|length=2250bp
GCGTCCCTAAGCATCAACCGTTAGGTTTTAAAGACACTTTCAATCCATTG
AAGTTACTTTGAAAAGAAGAGGAAAAGCTCCTGATTACTGTCAATGGTTT
CAAGCGATTTTCGATTGTTCAGTTTATAGATAAAGTTATGaatttttgat
gcatttttttcctcttttatgTTTTCCTATTTCTTCCCTCCCAATTCAGT
CTTTTTCAATAGGAAACTGGGCCTTAAAATAATAGCTGTTAATCGCTTTC
TCAAGGGTGATGAAAATTCATAAACATTTTACAGCTCCTGTTCTTttaaa
tctttagaaaaaaattcaaagaagcAGTTACTCATAGTTAGAGGTTCGAA
CTGGTAGGACCTCACGCGAGAATATTCTGAAAGTCAAAAAGACCAACGTC
ACAGGGATTAATTCTATGGTGTCATTGAAAACAAACAAAGTTGTCTTTGG
ATTTTCGAACATCTTTATCAGTTGTTGCTGGGTCATTCAATTATCTATTG
GAATCAATTAAAGCAAAGAAGTATTAAAGCTAATTAAGACATCATTAAGA
TGAGAGAATGTCATTACGACCACATGCCACCAGTCATTCGATGTAAACAT
GATATATTTTACCAAGATCAAGAAAACGTCGACCAAAACGATGACCCATA
CTCAGGAACATTTCAATTGGAACAGTTATGTCATCATCTCAAAGGCGGTG
CAATGATATATGATGTACTCGACAACGACGCTTTCACATACAAGAGAATG
TTTACCAGAGCCATTATTTTGAAACACCAGACTGGCGTATTGTCATATCA
CAATGTGGTCAAACACCAACAAGGACCTCTGCAAAGCTACTATGATGCAG
ATTCCAATACCATTACATCTAACATCCTCACCTCCGAATCAAGAATCatc
tttttaaaagaacatttcCAAAGTCAAGGAGAAAATGGAGAAGGGGTTtt
gaattttgtgatttttcacatcgACTTAATCACCAAATCATGGATAGAAC
TTACACATAGTGTTGTACTTCAAGAGAGCTTTGGAACACATACTATCACA
ATGAACCAATCACAATTGTTAATTTCTTTAAATCGACCACTCAAAATATT
CGCTTTCGATTTCCACCAAGCCATCACTCCACAAGATGTGATGGTCCACC
AATGGCAAAGTGACATCAACATCACTAGAACTTTATCATGTTTGAATTTC
ATTTTGCTCTTTACCATTCAAGACGAATTTGTATGTTTGACATTGACGAA
ATGTGGTGTCATCGAGTCAATAATCAAAAAGCCTTGCTCCTCGCTGAAAG
ACGAGTATAACGAACTTGTTCAAATTGAGAACATCAACGGTCGAATTGTT
ATGGTCGCACAGAAAGACAATAAAGTGCTTTTTCTACAAATTCAAAATGA
CGCCTTTGTTATCACTAAAACTTTAGACTTGACGGCAATTCATTGTTTCA
AGGCTAGCTATCCACTTATTGTCAAAGGTTTAATGTGTTGGCGAAGGAGA
CGTTTATACATCCCTGTGGCAATAATGAAACGGACTTTTCCAGAAGAGGA
TCATGTTTTATCAGATGCTTTCTCCATATTGGAAATCCATATGGacaatt
ttcatatcaaaagTATTTTGCAGATTGAAAGCAAGGTGGACATCTACCAA
GAGACAGTGCATCTGACGTTAGCGCAACACGGTAGTGTGCTTCTGGTGAG
AAAGGAGAAGAAATCATTGGATGGGAAGAACGCAAATGTTGTATCTTGTC
ACGTGGTTCAGTTGCTTCCACACACATTGAAAGAGGCTTCATTAGCTGTC
ATTGCTAACCAACGCACTGCCAATGTTATTTTGCACTTTAACAACGCCCA
TTTTCAAAGGCAAATTGTAGAAAGTTATGATTTTTAGGGCTAGActttta
tgatatattttatgaaatatttagtTAGAATAGACGAGTTATCTTGATAT
GAAATTTTGNACAACGCCCATTTTCAAAGGCAAATTGTAGAAAGTTATGA
TTTTTAGCGCTAGActtttatgatatattttatgaaatatttagtTAGAA
TAGACGAGTTATCttgatatgaaattttgatatttccttCCCAATGGACT
TGGTAACGAGGAACTGACCTGTGTGCAGTCTTTCTTACCAAACCATTTTT
ATCTACAAGTGCTTCTTTATTGTGCTTATCAAATTTCATCAAGATATAAT
AGATAACCCTATCTTGAACTGCAAATATTTTAATGTGCTGTCAATTGTCA Run BLAST on NCBI protein sequence of TCONS_00067533-protein >TCONS_00067533-protein ID=TCONS_00067533-protein|Name=TCONS_00067533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MRECHYDHMPPVIRCKHDIFYQDQENVDQNDDPYSGTFQLEQLCHHLKGG
AMIYDVLDNDAFTYKRMFTRAIILKHQTGVLSYHNVVKHQQGPLQSYYDA
DSNTITSNILTSESRIIFLKEHFQSQGENGEGVLNFVIFHIDLITKSWIE
LTHSVVLQESFGTHTITMNQSQLLISLNRPLKIFAFDFHQAITPQDVMVH
QWQSDINITRTLSCLNFILLFTIQDEFVCLTLTKCGVIESIIKKPCSSLK
DEYNELVQIENINGRIVMVAQKDNKVLFLQIQNDAFVITKTLDLTAIHCF
KASYPLIVKGLMCWRRRRLYIPVAIMKRTFPEEDHVLSDAFSILEIHMDN
FHIKSILQIESKVDIYQETVHLTLAQHGSVLLVRKEKKSLDGKNANVVSC
HVVQLLPHTLKEASLAVIANQRTANVILHFNNAHFQRQIVESYDF Run BLAST on NCBI transcript from alignment at scaffold_47:365424..367673 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067533 ID=TCONS_00067533|Name=TCONS_00067533|organism=Clytia hemisphaerica|type=transcript|length=2250bp|location=Sequence derived from alignment at scaffold_47:365424..367673 (Clytia hemisphaerica)
TGACAATTGACAGCACATTAAAATATTTGCAGTTCAAGATAGGGTTATCT
ATTATATCTTGATGAAATTTGATAAGCACAATAAAGAAGCACTTGTAGAT
AAAAATGGTTTGGTAAGAAAGACTGCACACAGGTCAGTTCCTCGTTACCA
AGTCCATTGGGaaggaaatatcaaaatttcatatcaaGATAACTCGTCTA
TTCTAactaaatatttcataaaatatatcataaaagTCTAGCGCTAAAAA
TCATAACTTTCTACAATTTGCCTTTGAAAATGGGCGTTGTNCAAAATTTC
ATATCAAGATAACTCGTCTATTCTAactaaatatttcataaaatatatca
taaaagTCTAGCCCTAAAAATCATAACTTTCTACAATTTGCCTTTGAAAA
TGGGCGTTGTTAAAGTGCAAAATAACATTGGCAGTGCGTTGGTTAGCAAT
GACAGCTAATGAAGCCTCTTTCAATGTGTGTGGAAGCAACTGAACCACGT
GACAAGATACAACATTTGCGTTCTTCCCATCCAATGATTTCTTCTCCTTT
CTCACCAGAAGCACACTACCGTGTTGCGCTAACGTCAGATGCACTGTCTC
TTGGTAGATGTCCACCTTGCTTTCAATCTGCAAAATActtttgatatgaa
aattgtCCATATGGATTTCCAATATGGAGAAAGCATCTGATAAAACATGA
TCCTCTTCTGGAAAAGTCCGTTTCATTATTGCCACAGGGATGTATAAACG
TCTCCTTCGCCAACACATTAAACCTTTGACAATAAGTGGATAGCTAGCCT
TGAAACAATGAATTGCCGTCAAGTCTAAAGTTTTAGTGATAACAAAGGCG
TCATTTTGAATTTGTAGAAAAAGCACTTTATTGTCTTTCTGTGCGACCAT
AACAATTCGACCGTTGATGTTCTCAATTTGAACAAGTTCGTTATACTCGT
CTTTCAGCGAGGAGCAAGGCTTTTTGATTATTGACTCGATGACACCACAT
TTCGTCAATGTCAAACATACAAATTCGTCTTGAATGGTAAAGAGCAAAAT
GAAATTCAAACATGATAAAGTTCTAGTGATGTTGATGTCACTTTGCCATT
GGTGGACCATCACATCTTGTGGAGTGATGGCTTGGTGGAAATCGAAAGCG
AATATTTTGAGTGGTCGATTTAAAGAAATTAACAATTGTGATTGGTTCAT
TGTGATAGTATGTGTTCCAAAGCTCTCTTGAAGTACAACACTATGTGTAA
GTTCTATCCATGATTTGGTGATTAAGTcgatgtgaaaaatcacaaaattc
aaAACCCCTTCTCCATTTTCTCCTTGACTTTGgaaatgttcttttaaaaa
gatGATTCTTGATTCGGAGGTGAGGATGTTAGATGTAATGGTATTGGAAT
CTGCATCATAGTAGCTTTGCAGAGGTCCTTGTTGGTGTTTGACCACATTG
TGATATGACAATACGCCAGTCTGGTGTTTCAAAATAATGGCTCTGGTAAA
CATTCTCTTGTATGTGAAAGCGTCGTTGTCGAGTACATCATATATCATTG
CACCGCCTTTGAGATGATGACATAACTGTTCCAATTGAAATGTTCCTGAG
TATGGGTCATCGTTTTGGTCGACGTTTTCTTGATCTTGGTAAAATATATC
ATGTTTACATCGAATGACTGGTGGCATGTGGTCGTAATGACATTCTCTCA
TCTTAATGATGTCTTAATTAGCTTTAATACTTCTTTGCTTTAATTGATTC
CAATAGATAATTGAATGACCCAGCAACAACTGATAAAGATGTTCGAAAAT
CCAAAGACAACTTTGTTTGTTTTCAATGACACCATAGAATTAATCCCTGT
GACGTTGGTCTTTTTGACTTTCAGAATATTCTCGCGTGAGGTCCTACCAG
TTCGAACCTCTAACTATGAGTAACTgcttctttgaatttttttctaaaga
tttaaAAGAACAGGAGCTGTAAAATGTTTATGAATTTTCATCACCCTTGA
GAAAGCGATTAACAGCTATTATTTTAAGGCCCAGTTTCCTATTGAAAAAG
ACTGAATTGGGAGGGAAGAAATAGGAAAAcataaaagaggaaaaaaatgc
atcaaaaattCATAACTTTATCTATAAACTGAACAATCGAAAATCGCTTG
AAACCATTGACAGTAATCAGGAGCTTTTCCTCTTCTTTTCAAAGTAACTT
CAATGGATTGAAAGTGTCTTTAAAACCTAACGGTTGATGCTTAGGGACGC
Coding sequence (CDS) from alignment at scaffold_47:365424..367673 >TCONS_00067533 ID=TCONS_00067533|Name=TCONS_00067533|organism=Clytia hemisphaerica|type=CDS|length=1338bp|location=Sequence derived from alignment at scaffold_47:365424..367673 (Clytia hemisphaerica)
CTAAAAATCATAACTTTCTACAATTTGCCTTTGAAAATGGGCGTTGTTAA
AGTGCAAAATAACATTGGCAGTGCGTTGGTTAGCAATGACAGCTAATGAA
GCCTCTTTCAATGTGTGTGGAAGCAACTGAACCACGTGACAAGATACAAC
ATTTGCGTTCTTCCCATCCAATGATTTCTTCTCCTTTCTCACCAGAAGCA
CACTACCGTGTTGCGCTAACGTCAGATGCACTGTCTCTTGGTAGATGTCC
ACCTTGCTTTCAATCTGCAAAATActtttgatatgaaaattgtCCATATG
GATTTCCAATATGGAGAAAGCATCTGATAAAACATGATCCTCTTCTGGAA
AAGTCCGTTTCATTATTGCCACAGGGATGTATAAACGTCTCCTTCGCCAA
CACATTAAACCTTTGACAATAAGTGGATAGCTAGCCTTGAAACAATGAAT
TGCCGTCAAGTCTAAAGTTTTAGTGATAACAAAGGCGTCATTTTGAATTT
GTAGAAAAAGCACTTTATTGTCTTTCTGTGCGACCATAACAATTCGACCG
TTGATGTTCTCAATTTGAACAAGTTCGTTATACTCGTCTTTCAGCGAGGA
GCAAGGCTTTTTGATTATTGACTCGATGACACCACATTTCGTCAATGTCA
AACATACAAATTCGTCTTGAATGGTAAAGAGCAAAATGAAATTCAAACAT
GATAAAGTTCTAGTGATGTTGATGTCACTTTGCCATTGGTGGACCATCAC
ATCTTGTGGAGTGATGGCTTGGTGGAAATCGAAAGCGAATATTTTGAGTG
GTCGATTTAAAGAAATTAACAATTGTGATTGGTTCATTGTGATAGTATGT
GTTCCAAAGCTCTCTTGAAGTACAACACTATGTGTAAGTTCTATCCATGA
TTTGGTGATTAAGTcgatgtgaaaaatcacaaaattcaaAACCCCTTCTC
CATTTTCTCCTTGACTTTGgaaatgttcttttaaaaagatGATTCTTGAT
TCGGAGGTGAGGATGTTAGATGTAATGGTATTGGAATCTGCATCATAGTA
GCTTTGCAGAGGTCCTTGTTGGTGTTTGACCACATTGTGATATGACAATA
CGCCAGTCTGGTGTTTCAAAATAATGGCTCTGGTAAACATTCTCTTGTAT
GTGAAAGCGTCGTTGTCGAGTACATCATATATCATTGCACCGCCTTTGAG
ATGATGACATAACTGTTCCAATTGAAATGTTCCTGAGTATGGGTCATCGT
TTTGGTCGACGTTTTCTTGATCTTGGTAAAATATATCATGTTTACATCGA
ATGACTGGTGGCATGTGGTCGTAATGACATTCTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067533-exon-scaffold_47-1491911889:365424..367673 | TCONS_00067533-exon-scaffold_47-1491911889:365424..367673 | Clytia hemisphaerica | exon |
| TCONS_00067533-exon-scaffold_47-1510915933:365424..367673 | TCONS_00067533-exon-scaffold_47-1510915933:365424..367673 | Clytia hemisphaerica | exon |
| TCONS_00067533-exon-scaffold_47-1575043694:365424..367673 | TCONS_00067533-exon-scaffold_47-1575043694:365424..367673 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_47 | supercontig | scaffold_47:365424..367673 . |
Blast
The following BLAST results are available for this feature:
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