|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067532 ID=TCONS_00067532|Name=TCONS_00067532|organism=Clytia hemisphaerica|type=transcript|length=1520bp
ATTCAGCATTATTTCAACAAACgaaagaaaagattgaaaagtttagattt
atgtttgatttattttggaaacgtcaaaaattttgttcGTTTTGAAGGAC
CTGACACAGATAAAATGACGAGATGGAAAGATGGCTGATGTTGTTTTGGT
TTGGTGTTCTCCTTCTCTTTCCATATATCTCGTCATCGAAGGAGACACAA
CCTTCATCAGAGATCGATGATCTGGTCGGATATTTCCACCAACAAGAAGA
TGACGAAGGAACCGATGAGATAATTGACTTTCCACAGAAACTTCACGCCA
CTTCCACAAAATCTGAACCGTTAAAGAAACTAACCAACATTAGCAGAGCT
AATACTTTGGATACTTTATTCCCATTCTTACAACAAGGGAACAATGGTAC
AAGTTTTGATAGGTTTGCCGATGATGACGATTCCAACATGCAGAATAAGA
ACAGCGAGGATGATGAATACCTCAATGACTTTTCCAATGACGAAACGTTT
CTATCGCCTTTGGAGAAGTTACCAATCATTGGTAACCTTATTACGGGAAA
AAGTTTAACCGATGTATTACCACAAGAATCACACCAGCAAGTCACAAACA
TTATTGATGGATTTGATGTGAAGGTAAGAAATCAATCCTCTGGTGACGTC
AGATCATTACCGAAGGATGCACAACTTGATTTGGAAGATCCTGCTGCTGC
TGGTACTGTCCAACGATCAGAGCTTACTAACCAGGAAGCGGCTAATGGTA
ATAgtataaagtttaaaaatgcaAACAATCATGACCTAAAATATTCGACA
AAGAACAATATTACTGCCAAGCATGAATCGATTATCGACAAATCCACTTC
ACCCCCAACACCGAAGATTCACATTGTGAAGACAGATTCGTTCAAAGATT
CCGTCCATCTGTTACACTATAAACCAACTGTAAGCTATCATGCAGATTCT
ACCAAACATCACGTCGAAATTGTTGCTTCACGGAAGACTAACTTGTCCAA
CGTTTCACAACCTCTAACAAATGTTCATTCCAGTCGACCACATGGAACAC
AACTAAACAACATATCATCAAGAAATAAACAAGTTCAAACAAGTTCAGCT
CAACAACCAAAACCTCAACCAATGACCAACGTACATATGGCAACGGTCAA
AGCTAatcattcaaaaatatcaactGAACAAGAgccaataaaagaaaaac
agaacGAATCAATTTATCTTAGTCACCCAGCTTCTACAAAGTATCAAAAC
CAAAACCTATTAATCCAACCAGCCCAAAAGGTTATCAAATCACACacgag
aaaaacaacaaaagaaacacctggttatcaaaacttCAATAAGTCATTCT
ACCAAACAAATCATacgaaaacaaaagttattCCATCAAAAGCTTACGAG
AAGCCAAATCAAACGAATTCAAAACCTTATCGTCAACAATCATTGGAAAA
TtctacaaacaaaaacaaagcacCAGACATGAAAAACAAAGCCAATCAGA
CACATCCAAATAACCAGAAT Run BLAST on NCBI protein sequence of TCONS_00067532-protein >TCONS_00067532-protein ID=TCONS_00067532-protein|Name=TCONS_00067532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
MERWLMLFWFGVLLLFPYISSSKETQPSSEIDDLVGYFHQQEDDEGTDEI
IDFPQKLHATSTKSEPLKKLTNISRANTLDTLFPFLQQGNNGTSFDRFAD
DDDSNMQNKNSEDDEYLNDFSNDETFLSPLEKLPIIGNLITGKSLTDVLP
QESHQQVTNIIDGFDVKVRNQSSGDVRSLPKDAQLDLEDPAAAGTVQRSE
LTNQEAANGNSIKFKNANNHDLKYSTKNNITAKHESIIDKSTSPPTPKIH
IVKTDSFKDSVHLLHYKPTVSYHADSTKHHVEIVASRKTNLSNVSQPLTN
VHSSRPHGTQLNNISSRNKQVQTSSAQQPKPQPMTNVHMATVKANHSKIS
TEQEPIKEKQNESIYLSHPASTKYQNQNLLIQPAQKVIKSHTRKTTKETP
GYQNFNKSFYQTNHTKTKVIPSKAYEKPNQTNSKPYRQQSLENSTNKNKA
PDMKNKANQTHPNNQN Run BLAST on NCBI transcript from alignment at scaffold_47:349225..350744 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067532 ID=TCONS_00067532|Name=TCONS_00067532|organism=Clytia hemisphaerica|type=transcript|length=1520bp|location=Sequence derived from alignment at scaffold_47:349225..350744 (Clytia hemisphaerica)
ATTCTGGTTATTTGGATGTGTCTGATTGGCTTTGTTTTTCATGTCTGgtg
ctttgtttttgtttgtagaATTTTCCAATGATTGTTGACGATAAGGTTTT
GAATTCGTTTGATTTGGCTTCTCGTAAGCTTTTGATGGaataacttttgt
tttcgtATGATTTGTTTGGTAGAATGACTTATTGaagttttgataaccag
gtgtttcttttgttgtttttctcgtGTGTGATTTGATAACCTTTTGGGCT
GGTTGGATTAATAGGTTTTGGTTTTGATACTTTGTAGAAGCTGGGTGACT
AAGATAAATTGATTCgttctgtttttcttttattggcTCTTGTTCagttg
atatttttgaatgatTAGCTTTGACCGTTGCCATATGTACGTTGGTCATT
GGTTGAGGTTTTGGTTGTTGAGCTGAACTTGTTTGAACTTGTTTATTTCT
TGATGATATGTTGTTTAGTTGTGTTCCATGTGGTCGACTGGAATGAACAT
TTGTTAGAGGTTGTGAAACGTTGGACAAGTTAGTCTTCCGTGAAGCAACA
ATTTCGACGTGATGTTTGGTAGAATCTGCATGATAGCTTACAGTTGGTTT
ATAGTGTAACAGATGGACGGAATCTTTGAACGAATCTGTCTTCACAATGT
GAATCTTCGGTGTTGGGGGTGAAGTGGATTTGTCGATAATCGATTCATGC
TTGGCAGTAATATTGTTCTTTGTCGAATATTTTAGGTCATGATTGTTtgc
atttttaaactttatacTATTACCATTAGCCGCTTCCTGGTTAGTAAGCT
CTGATCGTTGGACAGTACCAGCAGCAGCAGGATCTTCCAAATCAAGTTGT
GCATCCTTCGGTAATGATCTGACGTCACCAGAGGATTGATTTCTTACCTT
CACATCAAATCCATCAATAATGTTTGTGACTTGCTGGTGTGATTCTTGTG
GTAATACATCGGTTAAACTTTTTCCCGTAATAAGGTTACCAATGATTGGT
AACTTCTCCAAAGGCGATAGAAACGTTTCGTCATTGGAAAAGTCATTGAG
GTATTCATCATCCTCGCTGTTCTTATTCTGCATGTTGGAATCGTCATCAT
CGGCAAACCTATCAAAACTTGTACCATTGTTCCCTTGTTGTAAGAATGGG
AATAAAGTATCCAAAGTATTAGCTCTGCTAATGTTGGTTAGTTTCTTTAA
CGGTTCAGATTTTGTGGAAGTGGCGTGAAGTTTCTGTGGAAAGTCAATTA
TCTCATCGGTTCCTTCGTCATCTTCTTGTTGGTGGAAATATCCGACCAGA
TCATCGATCTCTGATGAAGGTTGTGTCTCCTTCGATGACGAGATATATGG
AAAGAGAAGGAGAACACCAAACCAAAACAACATCAGCCATCTTTCCATCT
CGTCATTTTATCTGTGTCAGGTCCTTCAAAACgaacaaaatttttgacgt
ttccaaaataaatcaaacataaatctaaacttttcaatcttttctttcGT
TTGTTGAAATAATGCTGAAT Coding sequence (CDS) from alignment at scaffold_47:349225..350744 >TCONS_00067532 ID=TCONS_00067532|Name=TCONS_00067532|organism=Clytia hemisphaerica|type=CDS|length=1398bp|location=Sequence derived from alignment at scaffold_47:349225..350744 (Clytia hemisphaerica)
ATTCTGGTTATTTGGATGTGTCTGATTGGCTTTGTTTTTCATGTCTGgtg
ctttgtttttgtttgtagaATTTTCCAATGATTGTTGACGATAAGGTTTT
GAATTCGTTTGATTTGGCTTCTCGTAAGCTTTTGATGGaataacttttgt
tttcgtATGATTTGTTTGGTAGAATGACTTATTGaagttttgataaccag
gtgtttcttttgttgtttttctcgtGTGTGATTTGATAACCTTTTGGGCT
GGTTGGATTAATAGGTTTTGGTTTTGATACTTTGTAGAAGCTGGGTGACT
AAGATAAATTGATTCgttctgtttttcttttattggcTCTTGTTCagttg
atatttttgaatgatTAGCTTTGACCGTTGCCATATGTACGTTGGTCATT
GGTTGAGGTTTTGGTTGTTGAGCTGAACTTGTTTGAACTTGTTTATTTCT
TGATGATATGTTGTTTAGTTGTGTTCCATGTGGTCGACTGGAATGAACAT
TTGTTAGAGGTTGTGAAACGTTGGACAAGTTAGTCTTCCGTGAAGCAACA
ATTTCGACGTGATGTTTGGTAGAATCTGCATGATAGCTTACAGTTGGTTT
ATAGTGTAACAGATGGACGGAATCTTTGAACGAATCTGTCTTCACAATGT
GAATCTTCGGTGTTGGGGGTGAAGTGGATTTGTCGATAATCGATTCATGC
TTGGCAGTAATATTGTTCTTTGTCGAATATTTTAGGTCATGATTGTTtgc
atttttaaactttatacTATTACCATTAGCCGCTTCCTGGTTAGTAAGCT
CTGATCGTTGGACAGTACCAGCAGCAGCAGGATCTTCCAAATCAAGTTGT
GCATCCTTCGGTAATGATCTGACGTCACCAGAGGATTGATTTCTTACCTT
CACATCAAATCCATCAATAATGTTTGTGACTTGCTGGTGTGATTCTTGTG
GTAATACATCGGTTAAACTTTTTCCCGTAATAAGGTTACCAATGATTGGT
AACTTCTCCAAAGGCGATAGAAACGTTTCGTCATTGGAAAAGTCATTGAG
GTATTCATCATCCTCGCTGTTCTTATTCTGCATGTTGGAATCGTCATCAT
CGGCAAACCTATCAAAACTTGTACCATTGTTCCCTTGTTGTAAGAATGGG
AATAAAGTATCCAAAGTATTAGCTCTGCTAATGTTGGTTAGTTTCTTTAA
CGGTTCAGATTTTGTGGAAGTGGCGTGAAGTTTCTGTGGAAAGTCAATTA
TCTCATCGGTTCCTTCGTCATCTTCTTGTTGGTGGAAATATCCGACCAGA
TCATCGATCTCTGATGAAGGTTGTGTCTCCTTCGATGACGAGATATATGG
AAAGAGAAGGAGAACACCAAACCAAAACAACATCAGCCATCTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067532-exon-scaffold_47-1491911889:349225..350744 | TCONS_00067532-exon-scaffold_47-1491911889:349225..350744 | Clytia hemisphaerica | exon |
| TCONS_00067532-exon-scaffold_47-1510915933:349225..350744 | TCONS_00067532-exon-scaffold_47-1510915933:349225..350744 | Clytia hemisphaerica | exon |
| TCONS_00067532-exon-scaffold_47-1575043694:349225..350744 | TCONS_00067532-exon-scaffold_47-1575043694:349225..350744 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_47 | supercontig | scaffold_47:349225..350744 . |
Blast
The following BLAST results are available for this feature:
|
