TCONS_00067531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067531
Unique NameTCONS_00067531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067531 ID=TCONS_00067531|Name=TCONS_00067531|organism=Clytia hemisphaerica|type=transcript|length=1548bp
TAGAGTCGAAAGCCTCTAAAGAATCACCTCAAAACACAACATCAAATGTC
TTCATCAAGAAGAACAAGATTGTGTTCGTTCAACTTCCACAGACAGAAGG
AGCGCGTTGTATGGATGGATCCGCACCTGCTTATTACATACGCAATGGAT
ACGGTGATGGTGCACATAACTGGATCATTCACCTCCACGGTGGAGCGTGG
TGTTATGATCTCCACAGTTGCTCCAAAAGAAGGAGCACCATTCTTGGTTC
CACAAAAAGATCATTAGACGAAGATATAGGGGGTTTCTTTCACGGTGTCT
TATCCAACCAACCTGAAGTCAACCCTCATTTTTACAATTGGAACACGGCT
GTTCTCATTTATTGTGATGGAGGACTTTTCTCAGGTAATCGTGAAAAACC
ATTGGTTGGGAAAGGtaaaagatatttctttcaaggacgtaaaattttaa
aatcacagTTAGACAATATACGAGAAACGACTGATATGCCTCNAAATTTT
AAAATCACAGTTAGATAACATACGAGAAACGACTGATATGCCAGAAGGTA
GACAATTTATCTTGAGTGGAACGTCCGCTGGTGGGCTATCACTCATTTTA
CAAGCCAACTATATAAAACGATTCCTCCCCAGTCAAGCTAAAGTACGAGG
TCTTGTAGATGCAGGTTACTTTCTTGATCAAGGCTCCATCTTCAACACAA
GTATCTCAAACGTTCAATTCAAAGCTTTGTACAGTCTTCATAGACCAACA
TTGAGTCGCACCTGCGTTGAGAATCAACCAGCTGGGAAACGCTTCAAATG
TTTATTCCCTCAAGAGACGATGAAATATGTAAAGGTACCTTTATTTTTGG
TCAATTCTTTGTATGACCATTGGCAGCTGTCCTACCTTGAAGGTGTTTCT
TGTGTTTATGACGATACCAAGTGTGGCCAGTCCCAACATGATGTCATCCT
AGGTTTCCGAAATAAGATGTATAGTGCGTTAAACCAAGCATTTGGAGAGA
AAAACGACACTGGTGTATTTGCAAACTCTTGTTTCGGACATGGTCAAGTG
ATTTTAGATTATACTTGGTCGAAAGctcaaatcaataaaaaatcGATTGC
TGAGGCTTTTTATGATTGGTATAAAGATGAccaaatgacgtcatcaagag
aACACGTGCACGCTGATTGCAAATTACCGTGTAATGGAAGTTGTCCGACA
GTGTTGGCAAACCGTTGTGTGAAAAACTTCATCAAGGCCTCCCCTGAGCG
AAGAAAGCGAAATGCTGAACtgtgttgaatttttttcatctttcatatGG
ATAAAAAAGGAACTCTATTCTTATGTACAAATATATACAATCTAGCAAGG
TAGtatttacaaaaacatttttacggAATAAAAAAAGTGAGCctcaaaaa
ataattgagttaATATGAGAAAATAATCTCTCTAGTGTtggaaaacataa
aaaaactgAACTAGGCGTCTATAAATCAATAGGAAAATATTTACTATAAA
AATCTATCAATATCTACATCTTTGTTTCTACATACTAAGGCTCAATTT
Run BLAST on NCBI

protein sequence of TCONS_00067531-protein

>TCONS_00067531-protein ID=TCONS_00067531-protein|Name=TCONS_00067531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MPEGRQFILSGTSAGGLSLILQANYIKRFLPSQAKVRGLVDAGYFLDQGS
IFNTSISNVQFKALYSLHRPTLSRTCVENQPAGKRFKCLFPQETMKYVKV
PLFLVNSLYDHWQLSYLEGVSCVYDDTKCGQSQHDVILGFRNKMYSALNQ
AFGEKNDTGVFANSCFGHGQVILDYTWSKAQINKKSIAEAFYDWYKDDQM
TSSREHVHADCKLPCNGSCPTVLANRCVKNFIKASPERRKRNAELC
Run BLAST on NCBI

transcript from alignment at scaffold_47:347520..349067

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067531 ID=TCONS_00067531|Name=TCONS_00067531|organism=Clytia hemisphaerica|type=transcript|length=1548bp|location=Sequence derived from alignment at scaffold_47:347520..349067 (Clytia hemisphaerica)
AAATTGAGCCTTAGTATGTAGAAACAAAGATGTAGATATTGATAGATTTT
TATAGTAAATATTTTCCTATTGATTTATAGACGCCTAGTTcagttttttt
atgttttccaACACTAGAGAGATTATTTTCTCATATtaactcaattattt
tttgagGCTCACTTTTTTTATTccgtaaaaatgtttttgtaaataCTACC
TTGCTAGATTGTATATATTTGTACATAAGAATAGAGTTCCTTTTTTATCC
atatgaaagatgaaaaaaattcaacacaGTTCAGCATTTCGCTTTCTTCG
CTCAGGGGAGGCCTTGATGAAGTTTTTCACACAACGGTTTGCCAACACTG
TCGGACAACTTCCATTACACGGTAATTTGCAATCAGCGTGCACGTGTtct
cttgatgacgtcatttggTCATCTTTATACCAATCATAAAAAGCCTCAGC
AATCgattttttattgatttgagCTTTCGACCAAGTATAATCTAAAATCA
CTTGACCATGTCCGAAACAAGAGTTTGCAAATACACCAGTGTCGTTTTTC
TCTCCAAATGCTTGGTTTAACGCACTATACATCTTATTTCGGAAACCTAG
GATGACATCATGTTGGGACTGGCCACACTTGGTATCGTCATAAACACAAG
AAACACCTTCAAGGTAGGACAGCTGCCAATGGTCATACAAAGAATTGACC
AAAAATAAAGGTACCTTTACATATTTCATCGTCTCTTGAGGGAATAAACA
TTTGAAGCGTTTCCCAGCTGGTTGATTCTCAACGCAGGTGCGACTCAATG
TTGGTCTATGAAGACTGTACAAAGCTTTGAATTGAACGTTTGAGATACTT
GTGTTGAAGATGGAGCCTTGATCAAGAAAGTAACCTGCATCTACAAGACC
TCGTACTTTAGCTTGACTGGGGAGGAATCGTTTTATATAGTTGGCTTGTA
AAATGAGTGATAGCCCACCAGCGGACGTTCCACTCAAGATAAATTGTCTA
CCTTCTGGCATATCAGTCGTTTCTCGTATGTTATCTAACTGTGATTTTAA
AATTTNGAGGCATATCAGTCGTTTCTCGTATATTGTCTAActgtgatttt
aaaattttacgtccttgaaagaaatatcttttaCCTTTCCCAACCAATGG
TTTTTCACGATTACCTGAGAAAAGTCCTCCATCACAATAAATGAGAACAG
CCGTGTTCCAATTGTAAAAATGAGGGTTGACTTCAGGTTGGTTGGATAAG
ACACCGTGAAAGAAACCCCCTATATCTTCGTCTAATGATCTTTTTGTGGA
ACCAAGAATGGTGCTCCTTCTTTTGGAGCAACTGTGGAGATCATAACACC
ACGCTCCACCGTGGAGGTGAATGATCCAGTTATGTGCACCATCACCGTAT
CCATTGCGTATGTAATAAGCAGGTGCGGATCCATCCATACAACGCGCTCC
TTCTGTCTGTGGAAGTTGAACGAACACAATCTTGTTCTTCTTGATGAAGA
CATTTGATGTTGTGTTTTGAGGTGATTCTTTAGAGGCTTTCGACTCTA

Coding sequence (CDS) from alignment at scaffold_47:347520..349067

>TCONS_00067531 ID=TCONS_00067531|Name=TCONS_00067531|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_47:347520..349067 (Clytia hemisphaerica)
tcaacacaGTTCAGCATTTCGCTTTCTTCGCTCAGGGGAGGCCTTGATGA
AGTTTTTCACACAACGGTTTGCCAACACTGTCGGACAACTTCCATTACAC
GGTAATTTGCAATCAGCGTGCACGTGTtctcttgatgacgtcatttggTC
ATCTTTATACCAATCATAAAAAGCCTCAGCAATCgattttttattgattt
gagCTTTCGACCAAGTATAATCTAAAATCACTTGACCATGTCCGAAACAA
GAGTTTGCAAATACACCAGTGTCGTTTTTCTCTCCAAATGCTTGGTTTAA
CGCACTATACATCTTATTTCGGAAACCTAGGATGACATCATGTTGGGACT
GGCCACACTTGGTATCGTCATAAACACAAGAAACACCTTCAAGGTAGGAC
AGCTGCCAATGGTCATACAAAGAATTGACCAAAAATAAAGGTACCTTTAC
ATATTTCATCGTCTCTTGAGGGAATAAACATTTGAAGCGTTTCCCAGCTG
GTTGATTCTCAACGCAGGTGCGACTCAATGTTGGTCTATGAAGACTGTAC
AAAGCTTTGAATTGAACGTTTGAGATACTTGTGTTGAAGATGGAGCCTTG
ATCAAGAAAGTAACCTGCATCTACAAGACCTCGTACTTTAGCTTGACTGG
GGAGGAATCGTTTTATATAGTTGGCTTGTAAAATGAGTGATAGCCCACCA
GCGGACGTTCCACTCAAGATAAATTGTCTACCTTCTGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042173XLOC_042173Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067531-proteinTCONS_00067531-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067531-exon-scaffold_47-1491911889:347520..349067TCONS_00067531-exon-scaffold_47-1491911889:347520..349067Clytia hemisphaericaexon
TCONS_00067531-exon-scaffold_47-1510915933:347520..349067TCONS_00067531-exon-scaffold_47-1510915933:347520..349067Clytia hemisphaericaexon
TCONS_00067531-exon-scaffold_47-1575043694:347520..349067TCONS_00067531-exon-scaffold_47-1575043694:347520..349067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:347520..349067 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.238461	0.10335	0.0599996	0	0.214386	0.254116	10.9347	12.2141	3.0142	3.06983	5.66402	2.47044	5.35692	3.53191	4.51354	11.6088	7.39916	7.38003	0.168993	0.265259	3.43275	3.2238	2.76453	2.34764	3.29988	4.21449	0.908272	0.155093	0.0588163	0.119849
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004963PAE/NOTUM
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
Blast
[Close]
BLAST of TCONS_00067531 vs. Swiss-Prot (Human)
Match: NOTUM (Palmitoleoyl-protein carboxylesterase NOTUM OS=Homo sapiens GN=NOTUM PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.509e-24
Identity = 57/237 (24.05%), Postives = 100/237 (42.19%), Query Frame = 1 
Query:  556 FILSGTSAGGLSLILQANYIKRFLPSQA----KVRGLVDAGYFLDQGSIFNTS-ISNVQFKALYSLHRP------TLSRTCVENQPAGKRFKCLFPQETMKYVKVPLFLVNSLYDHWQLSYLEGVSCVYDDTKCGQSQHDVILGFRNKMYSALNQAFGEKNDTGVFANSCFGHGQVILDYTWSKAQINKKSIAEAFYDWYKD--DQMTSSRE-------HVHADCKLP-CNGSCPTV 1203
             +L+G+SAGG  ++L  + +   L        +VRGL D+G+FLD     +T  +  +      ++ R        +   C      G+ + C F  +    ++ P+F+V  L+D  QL+       V +    GQ   + +  +   +   L      K+    FA +C  H ++I+   W+  Q+   S+  A + W +   D   +S+        H+   C  P CN SCPTV
Sbjct:  226 LLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNKQYRHTDCVDTITCAPTEAIRRGIRYWNGVVPERCRRQFQEGEEWNCFFGYKVYPTLRCPVFVVQWLFDEAQLT-------VDNVHLTGQPVQEGLRLYIQNLGRELRHTL--KDVPASFAPACLSH-EIIIRSHWTDVQVKGTSLPRALHCWDRSLHDSHKASKTPLKGCPVHLVDSCPWPHCNPSCPTV 452

HSP 2 Score: 63.1586 bits (152), Expect = 1.509e-24
Identity = 39/138 (28.26%), Postives = 67/138 (48.55%), Query Frame = 3 
Query:   63 NKIVFVQLPQTEGARCMDGSAPAYYIRNGYGDGAHNWIIHLHGGAWCYDLHSCSKRRSTI--LGSTKRSLDEDIGGFFHGVLSNQPEVNPHFYNWNTAVLIYCDGGLFSGNREKPLVGKGKRYFFQGRKILKSQLDNI 470
            N+ + + L       C DGS   YY++   G  +  W++ L GG +C++  +C  R  T+  L S++       G    G+LS+QPE NP+++N N   + YC   ++SG   K    +   Y F G  I++  +  +
Sbjct:   86 NEDLRLHLLLNTSVTCNDGSPAGYYLKESRG--SRRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGT---GILSSQPEENPYWWNANMVFIPYCSSDVWSGASSK---SEKNEYAFMGALIIQEVVREL 215
The following BLAST results are available for this feature:
BLAST of TCONS_00067531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOTUM1.509e-2424.05Palmitoleoyl-protein carboxylesterase NOTUM OS=Hom... [more]
back to top