TCONS_00067522 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067522
Unique NameTCONS_00067522
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067522 ID=TCONS_00067522|Name=TCONS_00067522|organism=Clytia hemisphaerica|type=transcript|length=802bp
CAAGAACTGCTTTAACTCTTGTCTTAACCAAGCACTTTTTCCTGAACGCT
TAAAGCGGGCCACAATTTAACCCCAGTCTTCAAAGAAGGCGATCCAACGA
GTGTTAAAAACTACAGACCTATTAGCATACTCCCTACAGTATCCAaagta
tttgaaaaaatcattgccCAACAGTTAAATCCTTTTCTAGAAAACTGCTT
CTCAGAGTTACTGTGTGGCTTCAGAAAAGGGCACAGAACACATCATGCTA
TATTGCGATTATTACATCTCTGGCAAAGGGCACTTGACGCTTCAAATATT
GTGGGTACTGTACTCATGGATTTATCTAAAGCTTATGATTGTCTACCCCC
TGATTTACTTATCGCAAAGCTAGCAGCATATGGTGTAAACCATAATAGTC
tattatttttatatgattATTTGACAAATCGCCAACATAGAGTTAAAATT
GGAAATAGTTTAAGTAGTTTTTTATCCATTATTATGGGTGTTCCTCAGGG
ATCCATTTTAGGCCCAATtctttttaacatatttttaaacgATCCTTTAC
TCTCTACCCGCGAGGTTGAACTTTGTAACTTTGCCGATGACAACACCCTC
TTTGCAATCGCACAAACCCTTGCTGAAGTTATTTTGAAACTTAATATCGA
GATTCAGGATATTTTACACTGGTTTAAGATCAATGGGCTTGTTGGTAACC
TTGGCAAGTTTCAAGTTATGTTTCTCGGTAGATTCGAACCTATACATATT
TTTACTATAGGTAATAtcaaagtcaaagtcaaaaatcAGGTTAAACTATT
AG
Run BLAST on NCBI

protein sequence of TCONS_00067522-protein

>TCONS_00067522-protein ID=TCONS_00067522-protein|Name=TCONS_00067522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MDLSKAYDCLPPDLLIAKLAAYGVNHNSLLFLYDYLTNRQHRVKIGNSLS
SFLSIIMGVPQGSILGPILFNIFLNDPLLSTREVELCNFADDNTLFAIAQ
TLAEVILKLNIEIQDILHWFKINGLVGNLGKFQVMFLGRFEPIHIFTIGN
IKVKVKNQVKLL
Run BLAST on NCBI

transcript from alignment at scaffold_47:150992..151793

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067522 ID=TCONS_00067522|Name=TCONS_00067522|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at scaffold_47:150992..151793 (Clytia hemisphaerica)
CTAATAGTTTAACCTgatttttgactttgactttgaTATTACCTATAGTA
AAAATATGTATAGGTTCGAATCTACCGAGAAACATAACTTGAAACTTGCC
AAGGTTACCAACAAGCCCATTGATCTTAAACCAGTGTAAAATATCCTGAA
TCTCGATATTAAGTTTCAAAATAACTTCAGCAAGGGTTTGTGCGATTGCA
AAGAGGGTGTTGTCATCGGCAAAGTTACAAAGTTCAACCTCGCGGGTAGA
GAGTAAAGGATcgtttaaaaatatgttaaaaagaATTGGGCCTAAAATGG
ATCCCTGAGGAACACCCATAATAATGGATAAAAAACTACTTAAACTATTT
CCAATTTTAACTCTATGTTGGCGATTTGTCAAATaatcatataaaaataa
taGACTATTATGGTTTACACCATATGCTGCTAGCTTTGCGATAAGTAAAT
CAGGGGGTAGACAATCATAAGCTTTAGATAAATCCATGAGTACAGTACCC
ACAATATTTGAAGCGTCAAGTGCCCTTTGCCAGAGATGTAATAATCGCAA
TATAGCATGATGTGTTCTGTGCCCTTTTCTGAAGCCACACAGTAACTCTG
AGAAGCAGTTTTCTAGAAAAGGATTTAACTGTTGggcaatgattttttca
aatacttTGGATACTGTAGGGAGTATGCTAATAGGTCTGTAGTTTTTAAC
ACTCGTTGGATCGCCTTCTTTGAAGACTGGGGTTAAATTGTGGCCCGCTT
TAAGCGTTCAGGAAAAAGTGCTTGGTTAAGACAAGAGTTAAAGCAGTTCT
TG

Coding sequence (CDS) from alignment at scaffold_47:150992..151793

>TCONS_00067522 ID=TCONS_00067522|Name=TCONS_00067522|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_47:150992..151793 (Clytia hemisphaerica)
TAATAGTTTAACCTgatttttgactttgactttgaTATTACCTATAGTAA
AAATATGTATAGGTTCGAATCTACCGAGAAACATAACTTGAAACTTGCCA
AGGTTACCAACAAGCCCATTGATCTTAAACCAGTGTAAAATATCCTGAAT
CTCGATATTAAGTTTCAAAATAACTTCAGCAAGGGTTTGTGCGATTGCAA
AGAGGGTGTTGTCATCGGCAAAGTTACAAAGTTCAACCTCGCGGGTAGAG
AGTAAAGGATcgtttaaaaatatgttaaaaagaATTGGGCCTAAAATGGA
TCCCTGAGGAACACCCATAATAATGGATAAAAAACTACTTAAACTATTTC
CAATTTTAACTCTATGTTGGCGATTTGTCAAATaatcatataaaaataat
aGACTATTATGGTTTACACCATATGCTGCTAGCTTTGCGATAAGTAAATC
AGGGGGTAGACAATCATAAGCTTTAGATAAATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042164XLOC_042164Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067522-proteinTCONS_00067522-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067522-exon-scaffold_47-1491911889:150992..151793TCONS_00067522-exon-scaffold_47-1491911889:150992..151793Clytia hemisphaericaexon
TCONS_00067522-exon-scaffold_47-1510915933:150992..151793TCONS_00067522-exon-scaffold_47-1510915933:150992..151793Clytia hemisphaericaexon
TCONS_00067522-exon-scaffold_47-1575043694:150992..151793TCONS_00067522-exon-scaffold_47-1575043694:150992..151793Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:150992..151793 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.58386 tpm) - - (4.32842 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83281	1.87978	1.44294	1.24956	3.22084	2.5466	2.80663	3.50841	1.17137	2.0934	1.08076	1.55133	0.691436	1.11559	1.15907	0.734615	0.58386	0.782573	1.00162	1.09806	3.62894	2.87608	2.76218	4.32842	2.4415	3.35393	3.20722	3.96594	3.23269	1.96202
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800Sequence
Match NameE-valueIdentityDescription
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