TCONS_00067521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067521
Unique NameTCONS_00067521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067521 ID=TCONS_00067521|Name=TCONS_00067521|organism=Clytia hemisphaerica|type=transcript|length=325bp
AGCACCAGACTCTCTGACATTCTGAGAAATTATTTGCCCGGGAAGAGCAG
CAGATTTCAGCGAAATGGtgctttttgctctaaaagtgtATAGTGGAAAT
GGTGcttgttttcaaacttaaacataaattcatttgaaatattttactta
TCTGGATTATTGAAAGgttaaaggtttgttttatttttattttttgatga
tagCTTCACTCAATCACTTACAACGAGCCttttaaatttgtttattttgg
tatTCTGATTGCTCTCGCATGATGCCGCAATTATGGAGTTTTATTTTTGC
GTTTGCTAAATGCGATTTTGTGAGA
Run BLAST on NCBI

transcript from alignment at scaffold_47:125508..125832

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067521 ID=TCONS_00067521|Name=TCONS_00067521|organism=Clytia hemisphaerica|type=transcript|length=325bp|location=Sequence derived from alignment at scaffold_47:125508..125832 (Clytia hemisphaerica)
TCTCACAAAATCGCATTTAGCAAACGCAAAAATAAAACTCCATAATTGCG
GCATCATGCGAGAGCAATCAGAataccaaaataaacaaatttaaaaGGCT
CGTTGTAAGTGATTGAGTGAAGctatcatcaaaaaataaaaataaaacaa
acctttaacCTTTCAATAATCCAGAtaagtaaaatatttcaaatgaattt
atgtttaagtttgaaaacaagCACCATTTCCACTATacacttttagagca
aaaagcaCCATTTCGCTGAAATCTGCTGCTCTTCCCGGGCAAATAATTTC
TCAGAATGTCAGAGAGTCTGGTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042163XLOC_042163Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067521-exon-scaffold_47-1491911889:125508..125832TCONS_00067521-exon-scaffold_47-1491911889:125508..125832Clytia hemisphaericaexon
TCONS_00067521-exon-scaffold_47-1510915933:125508..125832TCONS_00067521-exon-scaffold_47-1510915933:125508..125832Clytia hemisphaericaexon
TCONS_00067521-exon-scaffold_47-1575043694:125508..125832TCONS_00067521-exon-scaffold_47-1575043694:125508..125832Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:125508..125832 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.14076	2.38581	2.27873	2.04857	2.0621	0.3259	0.786369	0.736189	1.03085	0.957652	0.30984	1.22206	0.943349	0.422453	0.347313	0.18636	2.98455	0.235313	0	0.680382	1.77413	1.29803	0.350651	0.318793	1.9701	0.879131	0.83869	1.34261	2.27207	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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