TCONS_00067519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067519
Unique NameTCONS_00067519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067519 ID=TCONS_00067519|Name=TCONS_00067519|organism=Clytia hemisphaerica|type=transcript|length=410bp
ttttgaggCTGCTGCATAATACTGTTGGTCGGTTTTGCGTTCATTTTTAT
AAGAGATCAACGTCTTGTGTATTaatgaaagaaaattcattttgtCCAAT
GATAACATTATTACCTATCTACCACATCTGATCTCTGCAAACGAACGACC
GCTTTATAATGGCTATAATGCTCTGTTCGGGTTTCGAAAATGACTTTTTG
TTGCATTTTGTGTAAACTGAAGGACGTTACATATCGACATAACATAAGAA
GAGAGTTGGATTTTGTTGTTTTCATCGCTTGTATTTCTTTTGGTGAGAAC
GCGATGTGATGAGTTTAAACAACCCGCCACCTGCTACAGATATCCAAACA
ACCATCCAGGCTAATACAAGTGACACTGCAACATCTAGCCTGCATTCCAC
CACCGAAGTG
Run BLAST on NCBI

transcript from alignment at scaffold_47:83736..84145

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067519 ID=TCONS_00067519|Name=TCONS_00067519|organism=Clytia hemisphaerica|type=transcript|length=410bp|location=Sequence derived from alignment at scaffold_47:83736..84145 (Clytia hemisphaerica)
CACTTCGGTGGTGGAATGCAGGCTAGATGTTGCAGTGTCACTTGTATTAG
CCTGGATGGTTGTTTGGATATCTGTAGCAGGTGGCGGGTTGTTTAAACTC
ATCACATCGCGTTCTCACCAAAAGAAATACAAGCGATGAAAACAACAAAA
TCCAACTCTCTTCTTATGTTATGTCGATATGTAACGTCCTTCAGTTTACA
CAAAATGCAACAAAAAGTCATTTTCGAAACCCGAACAGAGCATTATAGCC
ATTATAAAGCGGTCGTTCGTTTGCAGAGATCAGATGTGGTAGATAGGTAA
TAATGTTATCATTGGacaaaatgaattttctttcattAATACACAAGACG
TTGATCTCTTATAAAAATGAACGCAAAACCGACCAACAGTATTATGCAGC
AGcctcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042161XLOC_042161Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067519-exon-scaffold_47-1491911889:83736..84145TCONS_00067519-exon-scaffold_47-1491911889:83736..84145Clytia hemisphaericaexon
TCONS_00067519-exon-scaffold_47-1510915933:83736..84145TCONS_00067519-exon-scaffold_47-1510915933:83736..84145Clytia hemisphaericaexon
TCONS_00067519-exon-scaffold_47-1575043694:83736..84145TCONS_00067519-exon-scaffold_47-1575043694:83736..84145Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:83736..84145 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.368473	0	0	0	0	0	0	9.80519	9.23514	0	0	8.70347	7.99105	1.01189	3.49584	6.44323	4.73565	0	0	0	0.199599
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top