TCONS_00067518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067518
Unique NameTCONS_00067518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length869

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067518 ID=TCONS_00067518|Name=TCONS_00067518|organism=Clytia hemisphaerica|type=transcript|length=869bp
ACTGATTCTTTTTGTGGCGGGTAAGGGAACTGCCTCATAACACAAAGTTC
GTTTTTTTGGAAGCATGTTGTATTTAACACACAGAAGCAATAACTACAAt
gtcttcttttgttttattagtatattttttttggcttaaaaactCAAAAT
GCTTTTTCCCAAGGATACAGTATATATGTGATGTCCTTGTATAACTTTTA
GCACGCTATATtatatcttttttgaaatattatattataCAGTGTCTTTT
TACGCTTAGCTCTTTAGTTTATTACTACAACATATTATAAATATAGcatc
aaaagttcaaaaactcaGCATCTCAGTATAACTTTAATAACTATAGTAAT
TTCAAACATataaccaaataaaaaaaaacaagttattTTCACATTTAAAA
AGCATATTGTATCATATAGCtcaattttttgtcattttttttctgagcat
attttttttgttttccagttgtttttgtaaaacagtttcaacaatatttt
agcTTCATTTATTATTTGTGTTTTTAGTTTTTGACATTCCGATTATTCGA
AATCTGCAAAactgcaaaatatcagaaaaactTAACAGCCGTAGTAGGCT
TTTATGAGTTGCATAGCCAATCATATTTTTCAACTATTTTACAAGGAAAG
GCCTTAAAATCCTTTCAGCAGcagatttttatcgttttttcgCACATTCG
TTCGTTAAACTTTTCCAGTCACTACCTATTCTTTCATTATATTGTTATTT
AGTATTATATTATCATAGAGCAGTTGTTTTAAAAtgttgtgtgtgtgtgt
gctATACGgctaaactttctcattccTGGTGCATTTCAAGGTTCTTTCCA
CTGCTTCATCGGACATCGG
Run BLAST on NCBI

transcript from alignment at scaffold_47:70355..71223

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067518 ID=TCONS_00067518|Name=TCONS_00067518|organism=Clytia hemisphaerica|type=transcript|length=869bp|location=Sequence derived from alignment at scaffold_47:70355..71223 (Clytia hemisphaerica)
CCGATGTCCGATGAAGCAGTGGAAAGAACCTTGAAATGCACCAggaatga
gaaagtttagcCGTATagcacacacacacacaacaTTTTAAAACAACTGC
TCTATGATAATATAATACTAAATAACAATATAATGAAAGAATAGGTAGTG
ACTGGAAAAGTTTAACGAACGAATGTGcgaaaaaacgataaaaatctgCT
GCTGAAAGGATTTTAAGGCCTTTCCTTGTAAAATAGTTGAAAAATATGAT
TGGCTATGCAACTCATAAAAGCCTACTACGGCTGTTAagtttttctgata
ttttgcagtTTTGCAGATTTCGAATAATCGGAATGTCAAAAACTAAAAAC
ACAAATAATAAATGAAgctaaaatattgttgaaactgttttacaaaaaca
actggaaaacaaaaaaaatatgctcagaaaaaaaatgacaaaaaattgaG
CTATATGATACAATATGCTTTTTAAATGTGAAaataacttgttttttttt
atttggttatATGTTTGAAATTACTATAGTTATTAAAGTTATACTGAGAT
GCtgagtttttgaacttttgatgCTATATTTATAATATGTTGTAGTAATA
AACTAAAGAGCTAAGCGTAAAAAGACACTGtataatataatatttcaaaa
aagatataATATAGCGTGCTAAAAGTTATACAAGGACATCACATATATAC
TGTATCCTTGGGAAAAAGCATTTTGagtttttaagccaaaaaaaatatac
taataaaacaaaagaagacaTTGTAGTTATTGCTTCTGTGTGTTAAATAC
AACATGCTTCCAAAAAAACGAACTTTGTGTTATGAGGCAGTTCCCTTACC
CGCCACAAAAAGAATCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042160XLOC_042160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067518-exon-scaffold_47-1491911889:70355..71223TCONS_00067518-exon-scaffold_47-1491911889:70355..71223Clytia hemisphaericaexon
TCONS_00067518-exon-scaffold_47-1510915933:70355..71223TCONS_00067518-exon-scaffold_47-1510915933:70355..71223Clytia hemisphaericaexon
TCONS_00067518-exon-scaffold_47-1575043694:70355..71223TCONS_00067518-exon-scaffold_47-1575043694:70355..71223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:70355..71223 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07508	1.04838	0.365179	0.476361	1.81226	0.57283	1.10575	1.68219	5.16393	3.92759	5.28264	6.19339	0.321752	0.148508	0.0610468	0.0982688	9.52332	11.3742	0.0571419	0	19.1779	18.8607	6.77968	8.06886	4.90564	7.88071	3.39055	4.40511	2.86382	4.80218
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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