TCONS_00067517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067517
Unique NameTCONS_00067517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length855

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067517 ID=TCONS_00067517|Name=TCONS_00067517|organism=Clytia hemisphaerica|type=transcript|length=855bp
TACATTTTTCACCTACTCGGTGTATTGGTCGTTTCATCTGTTTTAAAAAG
TAGCGCTAGTAAAGTTTTGTCGGGAATGAGAGAGTTTCACCGCTGTATGG
TATTTGGTGTGCAAGGTGTCCGGCAAAGAAATACTTTCTTGTGGACTAAC
GTTCTTTTATAGCTTGAAACAATGACAAAGGGTATATTTCTCCCTCGGCC
ACCTTGCACAGCAATCATTtcaagttttagtttttttctcaatcttTAGA
ACCGTTTTTTACAGTTGAAGAACtactttactttttctttttatatactt
tAGCTTGAGGGAATCTGTCGTCGCACAAATTTGTTATAATATCTTCAGAG
AAGCCTCTGCCCATTTGCTAACTGTGTAAATTTTCAGTAGAAATTTGTTA
AAATCACAAGTGCATTTTTGTTCGTCAGTCCCATCGCAAAGGGTTTTTTT
CACCGAGACATTCAACATTAGCGTTTATGTTCTTTCTGATGTGGCTTAGA
CTGTGAGATGACAGCAACCCTGGAcatcccagccggcacacaacgtcaaa
acaacgtccatgtgacattcataacggacgttaaaacaacgttgtgtgcc
ggctgggaaaATATTCTATATTTTCCGTTTTTTGAAAACGTCTAcatttt
tcaccaccatttgTTAGCTATAAGACGCACAATACACGCGAAGTTTTTCG
AAGCTTCTTTTTTGCGTGGTTTTGTTTTAGTGCGTCCTTAGCTAGATTCA
TTTTTCATAATATTCAATAACACTTTCAATTTTATTATTCAGTGGTCAAA
CCaccccaaataaatttttgtgcATATTTAAATACTTTGATTCTTTATTT
TGGAC
Run BLAST on NCBI

transcript from alignment at scaffold_47:69430..70284

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067517 ID=TCONS_00067517|Name=TCONS_00067517|organism=Clytia hemisphaerica|type=transcript|length=855bp|location=Sequence derived from alignment at scaffold_47:69430..70284 (Clytia hemisphaerica)
GTCCAAAATAAAGAATCAAAGTATTTAAATATgcacaaaaatttatttgg
ggtGGTTTGACCACTGAATAATAAAATTGAAAGTGTTATTGAATATTATG
AAAAATGAATCTAGCTAAGGACGCACTAAAACAAAACCACGCAAAAAAGA
AGCTTCGAAAAACTTCGCGTGTATTGTGCGTCTTATAGCTAAcaaatggt
ggtgaaaaatgTAGACGTTTTCAAAAAACGGAAAATATAGAATATtttcc
cagccggcacacaacgttgttttaacgtccgttatgaatgtcacatggac
gttgttttgacgttgtgtgccggctgggatgTCCAGGGTTGCTGTCATCT
CACAGTCTAAGCCACATCAGAAAGAACATAAACGCTAATGTTGAATGTCT
CGGTGAAAAAAACCCTTTGCGATGGGACTGACGAACAAAAATGCACTTGT
GATTTTAACAAATTTCTACTGAAAATTTACACAGTTAGCAAATGGGCAGA
GGCTTCTCTGAAGATATTATAACAAATTTGTGCGACGACAGATTCCCTCA
AGCTaaagtatataaaaagaaaaagtaaagtaGTTCTTCAACTGTAAAAA
ACGGTTCTAaagattgagaaaaaaactaaaacttgaAATGATTGCTGTGC
AAGGTGGCCGAGGGAGAAATATACCCTTTGTCATTGTTTCAAGCTATAAA
AGAACGTTAGTCCACAAGAAAGTATTTCTTTGCCGGACACCTTGCACACC
AAATACCATACAGCGGTGAAACTCTCTCATTCCCGACAAAACTTTACTAG
CGCTACTTTTTAAAACAGATGAAACGACCAATACACCGAGTAGGTGAAAA
ATGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042159XLOC_042159Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067517-exon-scaffold_47-1491911889:69430..70284TCONS_00067517-exon-scaffold_47-1491911889:69430..70284Clytia hemisphaericaexon
TCONS_00067517-exon-scaffold_47-1510915933:69430..70284TCONS_00067517-exon-scaffold_47-1510915933:69430..70284Clytia hemisphaericaexon
TCONS_00067517-exon-scaffold_47-1575043694:69430..70284TCONS_00067517-exon-scaffold_47-1575043694:69430..70284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:69430..70284 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (17.8113 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.67856	1.81992	0.559108	1.31622	3.29106	1.35636	1.30763	2.70395	6.72889	5.91943	6.92378	5.05301	0.0795265	0	0.0340538	0.0671047	10.9052	9.27951	0	0.0612911	17.3166	17.8113	8.62351	10.6607	7.55042	14.3269	3.75004	4.94696	3.93816	4.36135
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800Sequence
Match NameE-valueIdentityDescription
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